Cp4.1LG14g09890 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG14g09890
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein LOW PSII ACCUMULATION 3, chloroplastic
Location	Cp4.1LG14: 8406792 .. 8412855 (+)
RNA-Seq Expression	Cp4.1LG14g09890
Synteny	Cp4.1LG14g09890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGCTGCATTTCTCCTGGAGCGCAATCGAAGCCCATAACGCTCTTAAACCATCCCTGCGGCGGCTCCGTCGCAGCCCCACTAATCTGGCTGATAATCAACGGAAACACAACCGGAATCAACACCGTCAACACAGACAACGAGCACAGTTCATAGAAACACCATCCCGCCATCTCCATAATCGACGGCTTTTCCCCATGCCCTTCGTACGCCCTATACACCTCCTTCGCCCTCTCCAGCTTCGCCGCCATGCTGTGAAAATCCGGCGTATCCTTCCGGCTTCCGCCGCTGGCCGACCTCGTCGTCGACGTGATCCGGCCGCTGCCAGACCTCGGCGGCGGTGCGTTCTGGATCTCCGATGACTTCGGTCGTGGACTCTGCTCGGCCATAGCGATGTGCGCACAAGGTGTTCGATGAAATGCCGAAGTGAAAAATTAGGGCAAATTGTAGCGTAGAGAGGGGTAGAGTATTAAAATGGGGGATTGGGATGGAGGTTGACGAGGCTACAGCTGGTGGAGCGAGAGAATCAATGAAGATTGAAAGAGGAGTTTCGATACGTTCAGTGACAATGGCGGCCCGTAGGTATGGATCTTAGCATCTTTCTATGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTAAAAAAAAAAAAAAATATATATATATATATATATATATAAATAAGTGAAATGGAAGATTTGTATGATTCCATTCGGGCCTCTCGTTTGGAGGAAAGAACATCAATCATCAATATTCTCTCTCTCTTGTTTTTCTTTTTCACTTCGAAGTGTGCTTCATTCCTCAGGCAAGGCTTCCGATCGAGGAGAAATGTATTTCTCCAACGCGAATTTTGTCTCTAGCTCTACCATTCCGGCTGCGGTTCTTCCACTTCCTTCTCGAAATGTAATTTCTCGTGAAGTTTCTTTCTCGTTTTCTTTGGCGTTCTGCTCTATTTTACTTCGAAATTCTTTTTCCTCAAGTATTTTTTCTCTGTTTCTATCGGTAGTTTGCGTGTTTCAGGATGTCTCACCGGAAAATTCATCGGAGTTTACTTTCTAGTTCAGTGTTGGAGTTTATGGCGGGAAGAAATCTCAGAGTTCTGTCGAATTCGAGTAATCGCGAGAGTAGCGATACTTCGACTGATTTTGACGTTCCGTTTCCACGAGATTATTTTGATCTTCTTGATCAGGTTTGGTTTCAATCACTTTAGAAATCTCGTTTGTTTTTTTGTTTTTACTTCTTGGAGCCATTTTTTCTACGATCACTTCAATGCTGTGTGCGTTTTCTTGTGGTAGTTAGCTACTTCAATTAACTTCCACTTAGCTTTTCATTTCATGTTTTTTTCAAATTACGTTAAACTTTGAGATGTAACTGTCATTTTCGGATCTCGTCTATAAAAAACTGCAGGCGAAAAAAGCAACTGAAGCGGCTTTAAGAGACAACAAACAGTTGATGGTTAGTTTTGAGCACATTTTGATTTCTGTGGAATGGAGAGAAGCATTTATAATAGATTCATAAAATAGTCTTGAGTTTTCTGATCAAATCTATTCTACTTCAGGAGATTGAATTTCCAACTGCTGGACTCGAATCAGTTCCAGGTTCTTCCTGTTCTCGATTTATTGCATTTTAATTGTGTTACCATCTCAAGTCTTTCCCAGGCCTCTCTAGTAACTTCCTTTGCCTGTTACAGACCATATAACCTTATGTATCAGGTGATGGCGAAGGAGGAATCGAAATGACTGGGAGTATGCAATTGATTCGCCAATTTTGTGACTGCTTCATAGAGCCACTGAAAGCCACCAGGACCAGAGTGGTAATGTCCTACTCCATTATCCTTCTATTGTCTTATAAAATAAAATGTTTGCGTTCACATATATATGCTATAGAATTTATCACTGGAAGGAACTAAGAAGCAATCGATCTTTTATGCGTCTCTCTGAAATTTCATCTGCATACAGATCAAAACTATGAAGATTTTTCCCTTTTTCTCGAGAAACTACTCAGTGAGGTCGACACAATGTGGCTAACACATTTTCATCATCAGATGTATGATGGAGAAGTTTTCAAATTCATATCTAGTGGTTATTAAGAGGCCTGCAGATTTTTAATCCAAATCTAATAGCTATTACAAGGCAGCCATATGATAGTGGCCTCATTCAATAATTTATCAATCTTTTCCTTCTGATATCAGTACTAAAAACTTCTCTGGTGCTATGGACTATAGTTTAGAAAAATCTTCTTGTTTTCTTCACAATTAATCAACTTTTTCCCTTTTATCTTTACGATTTATCAACTTTTGTCCTCCGAAATACATTCATATTTTGACATTTGAACGAGGAAATGTAATGCAGCTAGCATCCTTTCTTTGTTAACAATCATTGTTTTGTTTGTAATATGCATGCTGTCTGATGTTCTCTCTCTTTCCTGACCATGAAAAAGCTCTTTCACATTCTAGACTGTTGGTTATAGTAAAGAGAAACATTTGTAGTTCTTTCCAGAGGCCAACGAAGTAAAATTTGCAAGAAATACAGCATTTGAGGGAGCTTCGTTCAAGTTGGACTACCTCACGAAACCATCATTCTTTGAGGATTTTGGTTTTGTTGAGAAAGTGAAAATGGCAGATCGTGTGAAACCAGAAGATGAACTTTTTCTGGTTGCATATCCATATTTCAATGTCAATGGTTAGTGCAGCCTTCCTTTGTTTCTTTTCCCTCTTATTTTAAACCACTTTGCTCTTTGTCGGTTAAATTACATCGTCTTATTCCCCATTGCAGAAATGCTTGTGGTTGAAGAGCTTTACAAGGAAGCTGTCGCAAACACAACACGAAAGCTCATCATATTTAATGGAGAGCTCGACCGCATTAGATCCGGCTGTATCCTTTTATCATCTTTTCTATTATCCAACGAAGAGTGGGCTTGGGATCAACTTTTAAAACGGTAAAAATGACATTAAGTGGTTTCTGAATTTCAAGAAAAATGTCAAAATCTTAATTTTTTTTCATTTAATTGGTTCATGAACTTAAAAAAATGTCCTCTAGTGCATATTTTTTTAAATTTATGAGACTTAGATTAATAGTTTATTAGTCTAGTGAATTTAGCTGGTAATGATTTAGTCTCATAACTCAATTTTGGTACTTTTAAATTTGTAACAATATAACTCAATATGCAACAATTTATTACTGTGTATTTTATAATTTGTAACGATTTAGTTCTTAGTCTAAACAAATAGTAATTAAATCGTTACAAATTGAAATGGTAGAAACTAAATTGTTAATTGTTCATGTTACCGAGCAAAGTTGAAAGACTTGTAAGTCCTTTTTAATCCTCTTTTACTTCATAAAATGAGATGAATTTTCCCATGACAGGTTGTTGGGTTGTAATTCCACAGTTCTCTTTTATTATTATTATTATTATTTTGTGTTTGTTATGTGACTCGACCTTAATAGAGTAAAGATTATCCGCCATTTTTCTACCCAAAGCTGGCGGCACTTACGAAGACCCTCTTCCCCAAGATGGAGACTGTATATTACATCCACAACTTCAAGGGACAGAAAGGAGGAGTTCTTTTCAGGTTGAACACGACACTTTTAAATCTTTTCCCGTTGATTATTCCTGTTGAGGATTATTGAGAGTGAGTCTCACATTGGTTAATTTAGTGGAAGATCATGAGTTTATAAGTGAAGAATACTATCTCCATTTGGTATAAAGCCTTTTGGGGAAGCTCAAAGGAAAGCAATGAGAGCTTATGCTCAAAGTGGACAATATCATACTATTGTCGAAATCCATGATTCTTAACATGGTATCAGAGCCATGCTTTGAACTTAGCCATGTCAATAGAATCCTCAAATATCGAACAAAGAATTATAAGACTTGAAAGTGTTGTCAAAAGTGACTAAAGTGTCGAACAAAGGGGGTGTACTTTGTTCGAGGGCTCCAGAGAAAGGAGTCGAGCCTCGATTAAAGGGAGGCTATTCGAGAGCTCCATAAATCTCAGGAGAGTCTTATAGTATTGTGTTTCCCGTTAGAGTGGAAAATATTTAGATTATTTTTTTTCATAATAATAGAATTAAAACCTTCAATTATTGTGTTTCCCGTTATTTATGGTAATGTAGGTGCTACCCAGGTCCTTGGAAAGTCCTTAGAAAAGTGAGGAATAAATTCGTCTGTGTGCATCAGCAGCAGGACATGCCTTCTCTCAAGGAAGTCGCTTTAAACATTCTTCCATCATCTTGAGGTTACGTAACTTCTCCACTAATGAACTCCTACTTCACAATCATCTCACACACATTCCATAAACTTTTTTTTTTTTTTGTTCTATAGTTTTAGAAATCAAGCTTATAAAAGTTACTGATGTATATTTGGTTTATTTATTACTATAATAATTTCAAGATGGTTGGGAATGCTCGACTTATCAATTTATCCAGTAAACTACTGGGGGCTCATGTAGCCCGTTAAGATAAATTGCAAAAACAAAAATAATCTTTTCTATATTGAATGAGGATTATTTGGTTTAACTGCATATGTATTGAGCGAACTACATTTTTTTTTTGGCAGGTCTTATTAGACGATATTACCCTTCATTTTCATGCAAAGAGGATCATTTGTTTGCTAGCATCGAAGTCTTTTCTGGTAAATGCTACATCATCATAATCTGTATATTCCTATTCAATATTTGACGTCCATGAAATTTACGGAATGCCCAATAATACACATAATTAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTCTAAAATTTAGTTTTATGTTTAATACATTCCTAACCTATTCCAATAATAATAATAACAGATTTATTAGTCTTTAAATCCACAAACTATAAATTTTGTATATAAAATTAGAATATACATAAAAAGTATGATTAAAAGTTTAGACATTTATACACTTTAAGGCCGTATTACAAACTTTTTAAAATTAAAGAAGACTTATTTTTGGAGTTAAAGACCCATCTGTAACTGTAATTTAACCTCAAGAAGGATTACTTTACGGTTAAATCTTAAAGTTCACTAAAATTCATTCAAAATGTAAGCATTAGAAAGAAAATAAAATTGAACTCTATGAACTATAAAACATAATTACAAATCCACGAACTGTTCAAGATTATTTGTTGCATATTGCTAAATCCAATTTCCCTCCAAGAAATACAGTGCAAAAAAAAGAAAAATGTACACAAGGAGAAAGTTCTTCGAGGGTATTATTGAGAAAACAACCATTTCCATTTCCATTTCCATTTCCATTTCCATTTCCATTTCCATTTCCATTTCCATTTCCATTCAGCTCAAACTATCAATAGTTATAAAACTCTTCCTTCCTCCTTCACCCTAAGAGATCACTAAAGTATCCCTTTTTGGGGGCCACAGAGAATCAAACAAAGGCACAAATATGAGGCATCTTTCAATATTAGGAGCTTGAAAAAGAGAAATGGTATTAACTCACTCGCTGGTATATAGTGATGCGGACGCATATGGTTCTATCTCATCCTTTTTCTTTCTAGCTTCTGTTTCGTGTAACAACAACCCCCCCGAATGACTCCAGTTCCTAAAAGCCCCACCCCCTTAATGAAGAAAGGTATAAGAAGATAGAGAAGGAAGTAGGTATTCTTCTATTTTCCACTTTTCTTTTTCTTTTTTTTATGTATAAAAAAAATAATATGGATATAAGTGGAGCTTCTGGGGAAAAGACAAGAATGCAATGGTATTGAGAAGGAAGTGAAAGTTAAGAGAGGGGGTGGAGAAATGAGTGTTTAGATGAAGAAGGAAGGACGAAGGACGAAGGAAGAAGGAAGAAGGGATAATTTGATGTATAAATTCAATCAGATGATGAGTCCAAGTTAGAGGGTATGGCTGAGGAGAGCTGAATATGAGACATTCGCACTGCTCCAAGTAATCTCTCTGGTAATTCTTCTGTTGTATTTGCCTACATTTTTTCACACACCGCCAAAACAAATTATATAACTGCTTTTAACACTTTTATAATAATACCATT

mRNA sequence

ACAGCTGCATTTCTCCTGGAGCGCAATCGAAGCCCATAACGCTCTTAAACCATCCCTGCGGCGGCTCCGTCGCAGCCCCACTAATCTGGCTGATAATCAACGGAAACACAACCGGAATCAACACCGTCAACACAGACAACGAGCACAGTTCATAGAAACACCATCCCGCCATCTCCATAATCGACGGCTTTTCCCCATGCCCTTCGTACGCCCTATACACCTCCTTCGCCCTCTCCAGCTTCGCCGCCATGCTGTGAAAATCCGGCGTATCCTTCCGGCTTCCGCCGCTGGCCGACCTCGTCGTCGACGTGATCCGGCCGCTGCCAGACCTCGGCGGCGGTGCGTTCTGGATCTCCGATGACTTCGGTCGTGGACTCTGCTCGGCCATAGCGATGTGCGCACAAGGTGTTCGATGAAATGCCGAAGTGAAAAATTAGGGCAAATTGTAGCGTAGAGAGGGGTAGAGTATTAAAATGGGGGATTGGGATGGAGGTTGACGAGGCTACAGCTGGTGGAGCGAGAGAATCAATGAAGATTGAAAGAGGAGTTTCGATACGTTCAGTGACAATGGCGGCCCGTAGGTATGGATCTTAGCATCTTTCTATGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTAAAAAAAAAAAAAAATATATATATATATATATATATATAAATAAGTGAAATGGAAGATTTGTATGATTCCATTCGGGCCTCTCGTTTGGAGGAAAGAACATCAATCATCAATATTCTCTCTCTCTTGTTTTTCTTTTTCACTTCGAAGTGTGCTTCATTCCTCAGGCAAGGCTTCCGATCGAGGAGAAATGTATTTCTCCAACGCGAATTTTGTCTCTAGCTCTACCATTCCGGCTGCGGTTCTTCCACTTCCTTCTCGAAATTTTGCGTGTTTCAGGATGTCTCACCGGAAAATTCATCGGAGTTTACTTTCTAGTTCAGTGTTGGAGTTTATGGCGGGAAGAAATCTCAGAGTTCTGTCGAATTCGAGTAATCGCGAGAGTAGCGATACTTCGACTGATTTTGACGTTCCGTTTCCACGAGATTATTTTGATCTTCTTGATCAGGCGAAAAAAGCAACTGAAGCGGCTTTAAGAGACAACAAACAGTTGATGGAGATTGAATTTCCAACTGCTGGACTCGAATCAGTTCCAGGTGATGGCGAAGGAGGAATCGAAATGACTGGGAGTATGCAATTGATTCGCCAATTTTGTGACTGCTTCATAGAGCCACTGAAAGCCACCAGGACCAGAGTGTTCTTTCCAGAGGCCAACGAAGTAAAATTTGCAAGAAATACAGCATTTGAGGGAGCTTCGTTCAAGTTGGACTACCTCACGAAACCATCATTCTTTGAGGATTTTGGTTTTGTTGAGAAAGTGAAAATGGCAGATCGTGTGAAACCAGAAGATGAACTTTTTCTGGTTGCATATCCATATTTCAATGTCAATGAAATGCTTGTGGTTGAAGAGCTTTACAAGGAAGCTGTCGCAAACACAACACGAAAGCTCATCATATTTAATGGAGAGCTCGACCGCATTAGATCCGGCTGTATCCTTTTATCATCTTTTCTATTATCCAACGAAGAGTGGGCTTGGGATCAACTTTTAAAACGGTGCTACCCAGGTCCTTGGAAAGTCCTTAGAAAAGTGAGGAATAAATTCGTCTGTGTGCATCAGCAGCAGGACATGCCTTCTCTCAAGGAAGTCGCTTTAAACATTCTTCCATCATCTTGAGGTCTTATTAGACGATATTACCCTTCATTTTCATGCAAAGAGGATCATTTGTTTGCTAGCATCGAAGTCTTTTCTGGTAAATGCTACATCATCATAATCTGTATATTCCTATTCAATATTTGACGTCCATGAAATTTACGGAATGCCCAATAATACACATAATTAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTCTAAAATTTAGTTTTATGTTTAATACATTCCTAACCTATTCCAATAATAATAATAACAGATTTATTAGTCTTTAAATCCACAAACTATAAATTTTGTATATAAAATTAGAATATACATAAAAAGTATGATTAAAAGTTTAGACATTTATACACTTTAAGGCCGTATTACAAACTTTTTAAAATTAAAGAAGACTTATTTTTGGAGTTAAAGACCCATCTGTAACTGTAATTTAACCTCAAGAAGGATTACTTTACGGTTAAATCTTAAAGTTCACTAAAATTCATTCAAAATGTAAGCATTAGAAAGAAAATAAAATTGAACTCTATGAACTATAAAACATAATTACAAATCCACGAACTGTTCAAGATTATTTGTTGCATATTGCTAAATCCAATTTCCCTCCAAGAAATACAGTGCAAAAAAAAGAAAAATGTACACAAGGAGAAAGTTCTTCGAGGGTATTATTGAGAAAACAACCATTTCCATTTCCATTTCCATTTCCATTTCCATTTCCATTTCCATTTCCATTTCCATTTCCATTCAGCTCAAACTATCAATAGTTATAAAACTCTTCCTTCCTCCTTCACCCTAAGAGATCACTAAAGTATCCCTTTTTGGGGGCCACAGAGAATCAAACAAAGGCACAAATATGAGGCATCTTTCAATATTAGGAGCTTGAAAAAGAGAAATGGTATTAACTCACTCGCTGGTATATAGTGATGCGGACGCATATGGTTCTATCTCATCCTTTTTCTTTCTAGCTTCTGTTTCGTGTAACAACAACCCCCCCGAATGACTCCAGTTCCTAAAAGCCCCACCCCCTTAATGAAGAAAGGTATAAGAAGATAGAGAAGGAAGTAGGTATTCTTCTATTTTCCACTTTTCTTTTTCTTTTTTTTATGTATAAAAAAAATAATATGGATATAAGTGGAGCTTCTGGGGAAAAGACAAGAATGCAATGGTATTGAGAAGGAAGTGAAAGTTAAGAGAGGGGGTGGAGAAATGAGTGTTTAGATGAAGAAGGAAGGACGAAGGACGAAGGAAGAAGGAAGAAGGGATAATTTGATGTATAAATTCAATCAGATGATGAGTCCAAGTTAGAGGGTATGGCTGAGGAGAGCTGAATATGAGACATTCGCACTGCTCCAAGTAATCTCTCTGGTAATTCTTCTGTTGTATTTGCCTACATTTTTTCACACACCGCCAAAACAAATTATATAACTGCTTTTAACACTTTTATAATAATACCATT

Coding sequence (CDS)

ATGATTCCATTCGGGCCTCTCGTTTGGAGGAAAGAACATCAATCATCAATATTCTCTCTCTCTTGTTTTTCTTTTTCACTTCGAAGTGTGCTTCATTCCTCAGGCAAGGCTTCCGATCGAGGAGAAATGTATTTCTCCAACGCGAATTTTGTCTCTAGCTCTACCATTCCGGCTGCGGTTCTTCCACTTCCTTCTCGAAATTTTGCGTGTTTCAGGATGTCTCACCGGAAAATTCATCGGAGTTTACTTTCTAGTTCAGTGTTGGAGTTTATGGCGGGAAGAAATCTCAGAGTTCTGTCGAATTCGAGTAATCGCGAGAGTAGCGATACTTCGACTGATTTTGACGTTCCGTTTCCACGAGATTATTTTGATCTTCTTGATCAGGCGAAAAAAGCAACTGAAGCGGCTTTAAGAGACAACAAACAGTTGATGGAGATTGAATTTCCAACTGCTGGACTCGAATCAGTTCCAGGTGATGGCGAAGGAGGAATCGAAATGACTGGGAGTATGCAATTGATTCGCCAATTTTGTGACTGCTTCATAGAGCCACTGAAAGCCACCAGGACCAGAGTGTTCTTTCCAGAGGCCAACGAAGTAAAATTTGCAAGAAATACAGCATTTGAGGGAGCTTCGTTCAAGTTGGACTACCTCACGAAACCATCATTCTTTGAGGATTTTGGTTTTGTTGAGAAAGTGAAAATGGCAGATCGTGTGAAACCAGAAGATGAACTTTTTCTGGTTGCATATCCATATTTCAATGTCAATGAAATGCTTGTGGTTGAAGAGCTTTACAAGGAAGCTGTCGCAAACACAACACGAAAGCTCATCATATTTAATGGAGAGCTCGACCGCATTAGATCCGGCTGTATCCTTTTATCATCTTTTCTATTATCCAACGAAGAGTGGGCTTGGGATCAACTTTTAAAACGGTGCTACCCAGGTCCTTGGAAAGTCCTTAGAAAAGTGAGGAATAAATTCGTCTGTGTGCATCAGCAGCAGGACATGCCTTCTCTCAAGGAAGTCGCTTTAAACATTCTTCCATCATCTTGA

Protein sequence

MIPFGPLVWRKEHQSSIFSLSCFSFSLRSVLHSSGKASDRGEMYFSNANFVSSSTIPAAVLPLPSRNFACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNSSNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEGGIEMTGSMQLIRQFCDCFIEPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSFFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGELDRIRSGCILLSSFLLSNEEWAWDQLLKRCYPGPWKVLRKVRNKFVCVHQQQDMPSLKEVALNILPSS

Homology

[Close]

BLAST of Cp4.1LG14g09890 vs. NCBI nr
Match: XP_023553103.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023553104.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 557 bits (1435), Expect = 4.53e-198
Identity = 288/325 (88.62%), Postives = 294/325 (90.46%), Query Frame = 0


Query: 43  MYFSNANFVSSSTIPAAVLPLPSRNFACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 102
           MYFSNANFVSSSTIPAAVLPLPSRNFACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS
Sbjct: 1   MYFSNANFVSSSTIPAAVLPLPSRNFACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 60

Query: 103 SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG 162
           SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG
Sbjct: 61  SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG 120

Query: 163 GIEMTGSMQLIRQFCDCFIEPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF 222
           GIEMTGSMQLIRQFCDCFIEPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF
Sbjct: 121 GIEMTGSMQLIRQFCDCFIEPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF 180

Query: 223 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGEL 282
           FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGEL
Sbjct: 181 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGEL 240

Query: 283 DRIRSGCI------------------LLSSFLLSNEEWAWDQLLKRCYPGPWKVLRKVRN 342
           DRIRSG                    + + + + N +     +L RCYPGPWKVLRKVRN
Sbjct: 241 DRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFRCYPGPWKVLRKVRN 300

Query: 343 KFVCVHQQQDMPSLKEVALNILPSS 349
           KFVCVHQQQDMPSLKEVALNILPSS
Sbjct: 301 KFVCVHQQQDMPSLKEVALNILPSS 325

[Close]

BLAST of Cp4.1LG14g09890 vs. NCBI nr
Match: XP_022923333.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 550 bits (1416), Expect = 3.55e-195
Identity = 284/325 (87.38%), Postives = 292/325 (89.85%), Query Frame = 0


Query: 43  MYFSNANFVSSSTIPAAVLPLPSRNFACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 102
           MYFSNANFVSSSTIPAAVLPLPSRN+ACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS
Sbjct: 1   MYFSNANFVSSSTIPAAVLPLPSRNYACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 60

Query: 103 SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG 162
           SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG
Sbjct: 61  SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG 120

Query: 163 GIEMTGSMQLIRQFCDCFIEPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF 222
           GIEMT SMQLIRQFCDCFI+PLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF
Sbjct: 121 GIEMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF 180

Query: 223 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGEL 282
           FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANT RKLIIFNGEL
Sbjct: 181 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGEL 240

Query: 283 DRIRSGCI------------------LLSSFLLSNEEWAWDQLLKRCYPGPWKVLRKVRN 342
           DRIRSG                    + + + + N +     +L RCYPGPWKVLRKVRN
Sbjct: 241 DRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFRCYPGPWKVLRKVRN 300

Query: 343 KFVCVHQQQDMPSLKEVALNILPSS 349
           KFVCVHQQQDMPSLKEVALNILPSS
Sbjct: 301 KFVCVHQQQDMPSLKEVALNILPSS 325

[Close]

BLAST of Cp4.1LG14g09890 vs. NCBI nr
Match: XP_022965338.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 545 bits (1404), Expect = 2.38e-193
Identity = 282/325 (86.77%), Postives = 290/325 (89.23%), Query Frame = 0


Query: 43  MYFSNANFVSSSTIPAAVLPLPSRNFACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 102
           MYFSNA FVSSSTIPAAVLPLPSRN+ACFRM HRKIHRSLLSSSVLEFMAGRNLRVLSNS
Sbjct: 1   MYFSNAKFVSSSTIPAAVLPLPSRNYACFRMCHRKIHRSLLSSSVLEFMAGRNLRVLSNS 60

Query: 103 SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG 162
           SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG
Sbjct: 61  SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG 120

Query: 163 GIEMTGSMQLIRQFCDCFIEPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF 222
           GIEMT SMQLIRQFCDCFI+PLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF
Sbjct: 121 GIEMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF 180

Query: 223 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGEL 282
           FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGEL
Sbjct: 181 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGEL 240

Query: 283 DRIRSGCI------------------LLSSFLLSNEEWAWDQLLKRCYPGPWKVLRKVRN 342
           DRIRSG                    + + + + N +     +L RCYPGPWKVLRKVRN
Sbjct: 241 DRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFRCYPGPWKVLRKVRN 300

Query: 343 KFVCVHQQQDMPSLKEVALNILPSS 349
           K VCVHQQQDMPSLKEVALNILPSS
Sbjct: 301 KLVCVHQQQDMPSLKEVALNILPSS 325

[Close]

BLAST of Cp4.1LG14g09890 vs. NCBI nr
Match: XP_038877166.1 (protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 519 bits (1336), Expect = 9.63e-183
Identity = 270/341 (79.18%), Postives = 282/341 (82.70%), Query Frame = 0


Query: 43  MYFSNANFVSSSTIPAAVLPLPSRNFACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 102
           M+FSNANF SSS IP A+LPLPS N ACFR+SHRK HRS L SS+ EF A RNLRV +NS
Sbjct: 1   MHFSNANFASSSAIPTAILPLPSPNLACFRISHRKTHRSFLFSSLFEFKARRNLRVSANS 60

Query: 103 SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG 162
           SNR+SS+ STD DVPFPRDY DLL+QAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG
Sbjct: 61  SNRQSSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG 120

Query: 163 GIEMTGSMQLIRQFCDCFIEPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF 222
           G EMT SMQLIRQFCDCFI+PLKATRTRVFFPEANEVKFARNTAFEG SFKLDYLTKPSF
Sbjct: 121 GNEMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGVSFKLDYLTKPSF 180

Query: 223 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGEL 282
           FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NTTRKLIIFNGEL
Sbjct: 181 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVQNTTRKLIIFNGEL 240

Query: 283 DRIRSGCILLSSFLLSNEEWAWDQ----------------------------------LL 342
           DRIRSGCILLS+FLL NEE   D                                   +L
Sbjct: 241 DRIRSGCILLSTFLLFNEERVKDYPPFFYPKLAALMKTLFPKMETVYYIHNFKGQKGGVL 300

Query: 343 KRCYPGPWKVLRKVRNKFVCVHQQQDMPSLKEVALNILPSS 349
            RCYPGPWKVLRKVRNKFVCVHQQ+DMPSLKEVALNILPSS
Sbjct: 301 FRCYPGPWKVLRKVRNKFVCVHQQEDMPSLKEVALNILPSS 341

[Close]

BLAST of Cp4.1LG14g09890 vs. NCBI nr
Match: KAE8650015.1 (hypothetical protein Csa_009730 [Cucumis sativus])

HSP 1 Score: 513 bits (1321), Expect = 6.29e-180
Identity = 278/378 (73.54%), Postives = 298/378 (78.84%), Query Frame = 0


Query: 2   IPFGPLVWRKEHQSSIFSLS-----------CFSFSLRSVLHSSGKASDRGEMYFSNANF 61
           IP  PLVWRKE+QSSI SLS           CF FSLRS            +M+F NANF
Sbjct: 8   IPLRPLVWRKEYQSSILSLSLSLSLSLSLSFCFQFSLRSS----------AKMHFCNANF 67

Query: 62  VSSSTIPAAVLPLPSRNFACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLS-NSSNRESSD 121
            SSSTI  AVLPLPS   ACFR+SHR+ HRS +SSS+ EFM  R+LRVL  N SNR+SS+
Sbjct: 68  ASSSTIATAVLPLPSPKLACFRISHRRTHRSSVSSSMFEFMPRRHLRVLPPNLSNRQSSN 127

Query: 122 TSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEGGIEMTGS 181
            STD DVPFPRDY DLL+QAKKATEAAL DNKQLMEIEFPTAGLESVPGDGEGGIEMT S
Sbjct: 128 ASTDLDVPFPRDYSDLLNQAKKATEAALIDNKQLMEIEFPTAGLESVPGDGEGGIEMTES 187

Query: 182 MQLIRQFCDCFIEPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSFFEDFGFV 241
           MQLIRQFCDCFI+PLKATRTRVFFPEANEVKFARNTAFEG SFKLDYLTKPSFFEDFGFV
Sbjct: 188 MQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGVSFKLDYLTKPSFFEDFGFV 247

Query: 242 EKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGELDRIRSG- 301
           EKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NTTRKLIIFNGELDRIRSG 
Sbjct: 248 EKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVQNTTRKLIIFNGELDRIRSGY 307

Query: 302 ---------CILLSS--------FLLSNEEWAWDQLLKRCYPGPWKVLRKVRNKFVCVHQ 349
                      L+ +        + + N +     +L R YPGPWKVLRKVRNKFVCVHQ
Sbjct: 308 YPPFFYPKLAALMKTLFPEMETVYYIHNFKGQKGGVLFRSYPGPWKVLRKVRNKFVCVHQ 367

[Close]

BLAST of Cp4.1LG14g09890 vs. ExPASy TrEMBL
Match: A0A6J1E988 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431057 PE=4 SV=1)

HSP 1 Score: 550 bits (1416), Expect = 1.72e-195
Identity = 284/325 (87.38%), Postives = 292/325 (89.85%), Query Frame = 0


Query: 43  MYFSNANFVSSSTIPAAVLPLPSRNFACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 102
           MYFSNANFVSSSTIPAAVLPLPSRN+ACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS
Sbjct: 1   MYFSNANFVSSSTIPAAVLPLPSRNYACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 60

Query: 103 SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG 162
           SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG
Sbjct: 61  SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG 120

Query: 163 GIEMTGSMQLIRQFCDCFIEPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF 222
           GIEMT SMQLIRQFCDCFI+PLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF
Sbjct: 121 GIEMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF 180

Query: 223 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGEL 282
           FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANT RKLIIFNGEL
Sbjct: 181 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGEL 240

Query: 283 DRIRSGCI------------------LLSSFLLSNEEWAWDQLLKRCYPGPWKVLRKVRN 342
           DRIRSG                    + + + + N +     +L RCYPGPWKVLRKVRN
Sbjct: 241 DRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFRCYPGPWKVLRKVRN 300

Query: 343 KFVCVHQQQDMPSLKEVALNILPSS 349
           KFVCVHQQQDMPSLKEVALNILPSS
Sbjct: 301 KFVCVHQQQDMPSLKEVALNILPSS 325

[Close]

BLAST of Cp4.1LG14g09890 vs. ExPASy TrEMBL
Match: A0A6J1HNL5 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111465233 PE=4 SV=1)

HSP 1 Score: 545 bits (1404), Expect = 1.15e-193
Identity = 282/325 (86.77%), Postives = 290/325 (89.23%), Query Frame = 0


Query: 43  MYFSNANFVSSSTIPAAVLPLPSRNFACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 102
           MYFSNA FVSSSTIPAAVLPLPSRN+ACFRM HRKIHRSLLSSSVLEFMAGRNLRVLSNS
Sbjct: 1   MYFSNAKFVSSSTIPAAVLPLPSRNYACFRMCHRKIHRSLLSSSVLEFMAGRNLRVLSNS 60

Query: 103 SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG 162
           SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG
Sbjct: 61  SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG 120

Query: 163 GIEMTGSMQLIRQFCDCFIEPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF 222
           GIEMT SMQLIRQFCDCFI+PLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF
Sbjct: 121 GIEMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF 180

Query: 223 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGEL 282
           FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGEL
Sbjct: 181 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGEL 240

Query: 283 DRIRSGCI------------------LLSSFLLSNEEWAWDQLLKRCYPGPWKVLRKVRN 342
           DRIRSG                    + + + + N +     +L RCYPGPWKVLRKVRN
Sbjct: 241 DRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFRCYPGPWKVLRKVRN 300

Query: 343 KFVCVHQQQDMPSLKEVALNILPSS 349
           K VCVHQQQDMPSLKEVALNILPSS
Sbjct: 301 KLVCVHQQQDMPSLKEVALNILPSS 325

[Close]

BLAST of Cp4.1LG14g09890 vs. ExPASy TrEMBL
Match: A0A6J1CWD3 (protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014905 PE=4 SV=1)

HSP 1 Score: 488 bits (1256), Expect = 4.05e-171
Identity = 254/326 (77.91%), Postives = 275/326 (84.36%), Query Frame = 0


Query: 43  MYFSNANFVSSSTIPAAVLPLPSRNFACFRMSHRKIHRSLLSSSVLEFMA-GRNLRVLSN 102
           M+FS ANF  +S+I AA+LPLPSRN ACFR+SHRK HRS +S S+LEFMA  RNLRV +N
Sbjct: 1   MHFSTANFAFTSSITAAILPLPSRNLACFRISHRKFHRSFVSGSMLEFMACRRNLRVSAN 60

Query: 103 SSNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGE 162
           S  RESS+ ST  DVPFPRDY DLLDQA+KATEAALRDNKQLMEIEFPTAGLESVPGD E
Sbjct: 61  SGYRESSNASTASDVPFPRDYSDLLDQARKATEAALRDNKQLMEIEFPTAGLESVPGDSE 120

Query: 163 GGIEMTGSMQLIRQFCDCFIEPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPS 222
           GGIEMT SMQLIRQFCDC I+PLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPS
Sbjct: 121 GGIEMTESMQLIRQFCDCSIDPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPS 180

Query: 223 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGE 282
           FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NTTRKLIIFNGE
Sbjct: 181 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVVNTTRKLIIFNGE 240

Query: 283 LDRIRSGC------------------ILLSSFLLSNEEWAWDQLLKRCYPGPWKVLRKVR 342
           LDRIRSG                   ++ + + + N +     +L RCYPGPWKVLRKVR
Sbjct: 241 LDRIRSGYYPPFFYPKLAALAKTLFPMMETVYYIHNFKGQKGGVLFRCYPGPWKVLRKVR 300

Query: 343 NKFVCVHQQQDMPSLKEVALNILPSS 349
           NKFVC+HQQQDMPSLKEVALNILP++
Sbjct: 301 NKFVCLHQQQDMPSLKEVALNILPAT 326

[Close]

BLAST of Cp4.1LG14g09890 vs. ExPASy TrEMBL
Match: A0A0A0L151 (DUF1995 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G006620 PE=4 SV=1)

HSP 1 Score: 483 bits (1244), Expect = 2.71e-169
Identity = 255/326 (78.22%), Postives = 273/326 (83.74%), Query Frame = 0


Query: 43  MYFSNANFVSSSTIPAAVLPLPSRNFACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLS-N 102
           M+F NANF SSSTI  AVLPLPS   ACFR+SHR+ HRS +SSS+ EFM  R+LRVL  N
Sbjct: 1   MHFCNANFASSSTIATAVLPLPSPKLACFRISHRRTHRSSVSSSMFEFMPRRHLRVLPPN 60

Query: 103 SSNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGE 162
            SNR+SS+ STD DVPFPRDY DLL+QAKKATEAAL DNKQLMEIEFPTAGLESVPGDGE
Sbjct: 61  LSNRQSSNASTDLDVPFPRDYSDLLNQAKKATEAALIDNKQLMEIEFPTAGLESVPGDGE 120

Query: 163 GGIEMTGSMQLIRQFCDCFIEPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPS 222
           GGIEMT SMQLIRQFCDCFI+PLKATRTRVFFPEANEVKFARNTAFEG SFKLDYLTKPS
Sbjct: 121 GGIEMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGVSFKLDYLTKPS 180

Query: 223 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGE 282
           FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NTTRKLIIFNGE
Sbjct: 181 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVQNTTRKLIIFNGE 240

Query: 283 LDRIRSG----------CILLSS--------FLLSNEEWAWDQLLKRCYPGPWKVLRKVR 342
           LDRIRSG            L+ +        + + N +     +L R YPGPWKVLRKVR
Sbjct: 241 LDRIRSGYYPPFFYPKLAALMKTLFPEMETVYYIHNFKGQKGGVLFRSYPGPWKVLRKVR 300

Query: 343 NKFVCVHQQQDMPSLKEVALNILPSS 349
           NKFVCVHQQ++MPSLKEVALNILPSS
Sbjct: 301 NKFVCVHQQEEMPSLKEVALNILPSS 326

[Close]

BLAST of Cp4.1LG14g09890 vs. ExPASy TrEMBL
Match: A0A1S3BKQ4 (protein LOW PSII ACCUMULATION 3, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490732 PE=4 SV=1)

HSP 1 Score: 483 bits (1244), Expect = 2.71e-169
Identity = 255/326 (78.22%), Postives = 272/326 (83.44%), Query Frame = 0


Query: 43  MYFSNANFVSSSTIPAAVLPLPSRNFACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 102
           M+FSNANF SSSTI  AVLPL S   ACFR+SHRK HRS +SSS+ EFM  RNLRVL  S
Sbjct: 1   MHFSNANFASSSTISTAVLPLSSPELACFRISHRKTHRSFVSSSMFEFMPRRNLRVLPPS 60

Query: 103 -SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGE 162
            SNR++S+ STD DVPFPRDY DLL+QAKKATEAALRDNKQLMEIEFPTAGLESVPGDGE
Sbjct: 61  LSNRQNSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGE 120

Query: 163 GGIEMTGSMQLIRQFCDCFIEPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPS 222
           GGIEMT SMQLIRQFCDCFI+PLKATRTRVFFPEANEVKFARNTAFEG SFKLDYLTKPS
Sbjct: 121 GGIEMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGVSFKLDYLTKPS 180

Query: 223 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGE 282
           FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NTTRKLIIFNGE
Sbjct: 181 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVQNTTRKLIIFNGE 240

Query: 283 LDRIRSG----------CILLSS--------FLLSNEEWAWDQLLKRCYPGPWKVLRKVR 342
           LDRIRSG            L+ +        + + N +     +L R YPGPWKVLRKVR
Sbjct: 241 LDRIRSGYYPPFFYPKLAALMKTLFPKMETVYYIHNFKGQKGGVLFRSYPGPWKVLRKVR 300

Query: 343 NKFVCVHQQQDMPSLKEVALNILPSS 349
           NK  CVHQQ++MPSLKEVALNILPSS
Sbjct: 301 NKLACVHQQEEMPSLKEVALNILPSS 326

[Close]

BLAST of Cp4.1LG14g09890 vs. TAIR 10
Match: AT5G48790.1 (Domain of unknown function (DUF1995) )

HSP 1 Score: 339.7 bits (870), Expect = 2.7e-93
Identity = 192/324 (59.26%), Postives = 226/324 (69.75%), Query Frame = 0


Query: 45  FSNANFVSSSTIPAAVLPLPSRNFACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS-S 104
           FS A  VS +++ A  L   S+N  C          SL S +       RNL+  + S S
Sbjct: 5   FSIATTVSPASL-AGTLASNSKNVLC----------SLHSKNNDITKTNRNLKFRACSVS 64

Query: 105 NRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEGG 164
              +++TS D +VPFPRDY +L++QAK+A E AL+D KQLMEIEFPT+GL SVPGDGEG 
Sbjct: 65  GGYNNNTSVD-NVPFPRDYVELINQAKEAVEMALKDEKQLMEIEFPTSGLASVPGDGEGA 124

Query: 165 IEMTGSMQLIRQFCDCFIEPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSFF 224
            EMT S+ +IR+FCD  + P KA  TR+FFPEANEVKFA+ T F G  FKLDYLTKPS F
Sbjct: 125 TEMTESINMIREFCDRLLAPEKARSTRIFFPEANEVKFAQKTVFGGTYFKLDYLTKPSLF 184

Query: 225 EDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGELD 284
           EDFGF E+VKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NT RKLIIFNGELD
Sbjct: 185 EDFGFFERVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVVNTDRKLIIFNGELD 244

Query: 285 RIRSG---------CILLSSFLLSNEEWAW---------DQLLKRCYPGPWKVLRKVRNK 344
           RIRSG            L+  LL   E  +           +L RCYPGPW+VLR+ RNK
Sbjct: 245 RIRSGYYPKFFYPKLAALTKTLLPKMETVYYIHNFKGQKGGVLFRCYPGPWQVLRRTRNK 304

Query: 345 FVCVHQQQDMPSLKEVALNILPSS 350
           ++CVHQQ+ MPSLKEVAL+IL S+
Sbjct: 305 YICVHQQESMPSLKEVALDILASA 316

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g09890 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG14g09890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553103.1	4.53e-198	88.62	protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo] >XP_...	[more]
XP_022923333.1	3.55e-195	87.38	protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita moschata]	[more]
XP_022965338.1	2.38e-193	86.77	protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita maxima]	[more]
XP_038877166.1	9.63e-183	79.18	protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Benincasa hispida]	[more]
KAE8650015.1	6.29e-180	73.54	hypothetical protein Csa_009730 [Cucumis sativus]	[more]

BLAST of Cp4.1LG14g09890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E988	1.72e-195	87.38	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HNL5	1.15e-193	86.77	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1CWD3	4.05e-171	77.91	protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 OS=Momordica charantia...	[more]
A0A0A0L151	2.71e-169	78.22	DUF1995 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G006620 PE=...	[more]
A0A1S3BKQ4	2.71e-169	78.22	protein LOW PSII ACCUMULATION 3, chloroplastic isoform X2 OS=Cucumis melo OX=365...	[more]

BLAST of Cp4.1LG14g09890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48790.1	2.7e-93	59.26	Domain of unknown function (DUF1995)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018962	Domain of unknown function DUF1995	PFAM	PF09353	DUF1995	coord: 119..342 e-value: 2.0E-33 score: 116.1
None	No IPR available	PANTHER	PTHR34051:SF1	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC ISOFORM X1	coord: 96..288
None	No IPR available	PANTHER	PTHR34051:SF1	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC ISOFORM X1	coord: 307..348
IPR044687	Protein LOW PSII ACCUMULATION 3	PANTHER	PTHR34051	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC	coord: 96..288
IPR044687	Protein LOW PSII ACCUMULATION 3	PANTHER	PTHR34051	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC	coord: 307..348

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g09890.1	Cp4.1LG14g09890.1	mRNA