Cp4.1LG14g09510 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG14g09510
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	HMA domain-containing protein
Location	Cp4.1LG14: 7979979 .. 7981814 (-)
RNA-Seq Expression	Cp4.1LG14g09510
Synteny	Cp4.1LG14g09510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAATTGTTATAAATGCAAATATGAGCTGCAATGGTTGTCGCCAAAGAGTTTCTCAACTTCTCTCTAAAATCTCTGGTTCGTATATTTTTCTTCTTCATCGTTATCCCGTCTCTTATTTTTGTTTCGAGTTCAAAATAGCTACTTCGAGTAACAAGATTTGAATAGTTTTATCTCTTAGATGAGAGTACATCACGCTCAAGTCCACTCTTACTTGTTTTGTTATATAAACTTAAGAACGTGAATTTAAACTCTTTAACATTTATTGGAGATGTTTTTTTTTTAGTTAATAGCATATTAGGGGGAGAGAATTGGGATAATTAAGTTTAGCTATACTCGAATGGGTTAAAATTTACTAAAACTACAGTATCTTTGAGTGAAACAAAAGTTTCGTATTAATTCATTATGAACTTAAGGATTACACATTTAACTGAAATGAGAAGAGACAAAGTGATTCTTTATTCAAAGATATCAAAATGACAGAACAAATATATTAGATCATACATAAAATCAAATTATATGGGTTGCAAGATCTCACATTAATTGTAGAAGAGAACGAACAAACATTCAAATGTGTTGGAGGATGGAAATCCCACATCCGCTAATTTAGGGAATGATCACAGGTTTATAAGTGAGTTGGTATGAGGCCTTTTAGGGAAGTCCAAAGCCCAAAGCAAAGCAATGAAAGCTTTGAGACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTACTGCCAAATTTAGAAAAGGAGTCGAGCCTCGATTAAGGGAAGGCAGGGAAGGCGCACTTTGTATTAAAACCACTTTTCTTTTATTCTTTTGAATTAAAATGGGTCCCTTCAACTTTGCATTCTAAAGGTTTACTTTTCTTGTCTAAATATGCAGAGTTAGTCGAGTTCACCATAGATGTGACAAAAAAACAAGTGGTTGTAAAAGGAAATGTGAAATTCCAAGGCAAGATTCACGAAGAAAATGGAGTCCATTCTCAAACCTACAACTCCAAATCTCTAAAATCACAATCCCTCACCCATCAATTCTCGAACAATTGCTTTTAAATTGATACTTTTTTTAATCCAAGTAGGCATCACATTTACTCAAATTATTATTGTATCTATACATCTAACTCGAACCACAAGATTATGTTATGTTGTAACTTCAATTGATTAACTGAAATTCCGTAGCATAGCAGCATGTGATTCCATCAAATACTCCTTGAACCTCAAATCGACTCAAATGATTCACCAACACAGCTTCAAATTCACACATTTTATTGAAAATCTCCACATCCAGAGAGCTACAACAAACACCTCCATGAAAGTGAACAAAGCAAAACTAAACAGAAAGCTCTACATTCTACAGTGTGAAAACAACAGAGAGTATGGTGTTCACCGTTTTTTTCTGCTAGTTTTGTCCAACTACTCGACAGTAATTTGCTTCACATCCTTCCTCTCTTCTTCCTTCACCTTTGGCACAGCTACTTTCAGAACTCCATTCTTCATCTCTGCTTTGATTGAATCCAGTTGATAGAGGTTAGCAGGCAAATCGAGTCGGCTCGAGAATCGTCTCCGATCAGATTCGTCCTCGGATTCTTTAGCAGCCTCGCCTTTGATAATGAGAGTGTTCTGCTCCACACTCACCTTCACATCTTCTTTGCTGAGTCCAGGCATGTCCATTCGTAGGTACAGAGCGTCGTCGTCTTCTCTCACGTCCCATCCCCTCCTAGATCCTGCTCCTACTCCTCGTGAAGCTGCCAGAAATGGATCTTCCATGAACTGATCCATCAGATTCAGAACCTGGCTTAGGCTTCGTGTCGGAGAAAACGGATCGAACACGTCTG

mRNA sequence

GTAATTGTTATAAATGCAAATATGAGCTGCAATGGTTGTCGCCAAAGAGTTTCTCAACTTCTCTCTAAAATCTCTGAGTTAGTCGAGTTCACCATAGATGTGACAAAAAAACAAGTGGTTGTAAAAGGAAATGTGAAATTCCAAGGCAAGATTCACGAAGAAAATGGAGTCCATTCTCAAACCTACAACTCCAAATCTCTAAAATCACAATCCCTCACCCATCAATTCTCGAACAATTGCTTTTAAATTGATACTTTTTTTAATCCAAGTAGGCATCACATTTACTCAAATTATTATTGTATCTATACATCTAACTCGAACCACAAGATTATGTTATGTTGTAACTTCAATTGATTAACTGAAATTCCGTAGCATAGCAGCATGTGATTCCATCAAATACTCCTTGAACCTCAAATCGACTCAAATGATTCACCAACACAGCTTCAAATTCACACATTTTATTGAAAATCTCCACATCCAGAGAGCTACAACAAACACCTCCATGAAAGTGAACAAAGCAAAACTAAACAGAAAGCTCTACATTCTACAGTGTGAAAACAACAGAGAGTATGGTGTTCACCGTTTTTTTCTGCTAGTTTTGTCCAACTACTCGACAGTAATTTGCTTCACATCCTTCCTCTCTTCTTCCTTCACCTTTGGCACAGCTACTTTCAGAACTCCATTCTTCATCTCTGCTTTGATTGAATCCAGTTGATAGAGGTTAGCAGGCAAATCGAGTCGGCTCGAGAATCGTCTCCGATCAGATTCGTCCTCGGATTCTTTAGCAGCCTCGCCTTTGATAATGAGAGTGTTCTGCTCCACACTCACCTTCACATCTTCTTTGCTGAGTCCAGGCATGTCCATTCGTAGGTACAGAGCGTCGTCGTCTTCTCTCACGTCCCATCCCCTCCTAGATCCTGCTCCTACTCCTCGTGAAGCTGCCAGAAATGGATCTTCCATGAACTGATCCATCAGATTCAGAACCTGGCTTAGGCTTCGTGTCGGAGAAAACGGATCGAACACGTCTG

Coding sequence (CDS)

GTAATTGTTATAAATGCAAATATGAGCTGCAATGGTTGTCGCCAAAGAGTTTCTCAACTTCTCTCTAAAATCTCTGAGTTAGTCGAGTTCACCATAGATGTGACAAAAAAACAAGTGGTTGTAAAAGGAAATGTGAAATTCCAAGGCAAGATTCACGAAGAAAATGGAGTCCATTCTCAAACCTACAACTCCAAATCTCTAAAATCACAATCCCTCACCCATCAATTCTCGAACAATTGCTTTTAA

Protein sequence

VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEENGVHSQTYNSKSLKSQSLTHQFSNNCF

Homology

[Close]

BLAST of Cp4.1LG14g09510 vs. NCBI nr
Match: XP_023553457.1 (uncharacterized protein LOC111810871 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 160 bits (406), Expect = 2.23e-49
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEENGVHSQ 60
          VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEENGVHSQ
Sbjct: 18 VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEENGVHSQ 77

Query: 61 TYNSKSLKSQSLTHQFSNNCF 81
          TYNSKSLKSQSLTHQFSNNCF
Sbjct: 78 TYNSKSLKSQSLTHQFSNNCF 98

[Close]

BLAST of Cp4.1LG14g09510 vs. NCBI nr
Match: XP_022965235.1 (uncharacterized protein LOC111465148 isoform X2 [Cucurbita maxima])

HSP 1 Score: 149 bits (377), Expect = 5.58e-45
Identity = 74/81 (91.36%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEENGVHSQ 60
          VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEE+ +HSQ
Sbjct: 16 VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEEDSIHSQ 75

Query: 61 TYNSKSLKSQSLTHQFSNNCF 81
          TYNS SLKSQSL+HQ+SN+CF
Sbjct: 76 TYNSNSLKSQSLSHQYSNDCF 96

[Close]

BLAST of Cp4.1LG14g09510 vs. NCBI nr
Match: XP_022965234.1 (uncharacterized protein LOC111465148 isoform X1 [Cucurbita maxima])

HSP 1 Score: 149 bits (377), Expect = 5.93e-45
Identity = 74/81 (91.36%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEENGVHSQ 60
          VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEE+ +HSQ
Sbjct: 18 VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEEDSIHSQ 77

Query: 61 TYNSKSLKSQSLTHQFSNNCF 81
          TYNS SLKSQSL+HQ+SN+CF
Sbjct: 78 TYNSNSLKSQSLSHQYSNDCF 98

[Close]

BLAST of Cp4.1LG14g09510 vs. NCBI nr
Match: KGN55871.1 (hypothetical protein Csa_010412 [Cucumis sativus])

HSP 1 Score: 106 bits (264), Expect = 9.40e-28
Identity = 58/81 (71.60%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 1  VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEENGVHSQ 60
          VIVINANMSCNGCRQRVSQ++SK+SEL E TIDVTKKQV+VKGNVK Q K ++EN +HSQ
Sbjct: 19 VIVINANMSCNGCRQRVSQIVSKMSELAELTIDVTKKQVIVKGNVKCQSK-NQENTIHSQ 78

Query: 61 TYNSKSLKSQSLTHQFSNNCF 81
            N  SLKS S    FSN+CF
Sbjct: 79 MNNCDSLKSPSP--HFSNSCF 96

[Close]

BLAST of Cp4.1LG14g09510 vs. NCBI nr
Match: XP_022154034.1 (uncharacterized protein LOC111021388 isoform X2 [Momordica charantia])

HSP 1 Score: 97.8 bits (242), Expect = 1.93e-24
Identity = 56/81 (69.14%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEENGVHSQ 60
          VIVINANM CN CRQRVSQLLSK+SEL+E TIDVTK QVVVKGN+KFQ K  EE  VH  
Sbjct: 16 VIVINANMGCNRCRQRVSQLLSKMSELIEVTIDVTKNQVVVKGNIKFQSK-KEEINVHYS 75

Query: 61 TYNSKSLKSQSLTHQFSNNCF 81
               SLKS SL  + SN+CF
Sbjct: 76 QVKGGSLKSISL--ELSNHCF 93

[Close]

BLAST of Cp4.1LG14g09510 vs. ExPASy TrEMBL
Match: A0A6J1HN60 (uncharacterized protein LOC111465148 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465148 PE=4 SV=1)

HSP 1 Score: 149 bits (377), Expect = 2.70e-45
Identity = 74/81 (91.36%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEENGVHSQ 60
          VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEE+ +HSQ
Sbjct: 16 VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEEDSIHSQ 75

Query: 61 TYNSKSLKSQSLTHQFSNNCF 81
          TYNS SLKSQSL+HQ+SN+CF
Sbjct: 76 TYNSNSLKSQSLSHQYSNDCF 96

[Close]

BLAST of Cp4.1LG14g09510 vs. ExPASy TrEMBL
Match: A0A6J1HQF9 (uncharacterized protein LOC111465148 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465148 PE=4 SV=1)

HSP 1 Score: 149 bits (377), Expect = 2.87e-45
Identity = 74/81 (91.36%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEENGVHSQ 60
          VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEE+ +HSQ
Sbjct: 18 VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEEDSIHSQ 77

Query: 61 TYNSKSLKSQSLTHQFSNNCF 81
          TYNS SLKSQSL+HQ+SN+CF
Sbjct: 78 TYNSNSLKSQSLSHQYSNDCF 98

[Close]

BLAST of Cp4.1LG14g09510 vs. ExPASy TrEMBL
Match: A0A0A0L6W5 (HMA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G020590 PE=4 SV=1)

HSP 1 Score: 106 bits (264), Expect = 4.55e-28
Identity = 58/81 (71.60%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 1  VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEENGVHSQ 60
          VIVINANMSCNGCRQRVSQ++SK+SEL E TIDVTKKQV+VKGNVK Q K ++EN +HSQ
Sbjct: 19 VIVINANMSCNGCRQRVSQIVSKMSELAELTIDVTKKQVIVKGNVKCQSK-NQENTIHSQ 78

Query: 61 TYNSKSLKSQSLTHQFSNNCF 81
            N  SLKS S    FSN+CF
Sbjct: 79 MNNCDSLKSPSP--HFSNSCF 96

[Close]

BLAST of Cp4.1LG14g09510 vs. ExPASy TrEMBL
Match: A0A6J1DKV3 (uncharacterized protein LOC111021388 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021388 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.37e-25
Identity = 56/81 (69.14%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEENGVHSQ 60
          VIVINANM CN CRQRVSQLLSK+SEL+E TIDVTK QVVVKGN+KFQ K  EE  VH  
Sbjct: 16 VIVINANMGCNRCRQRVSQLLSKMSELIEVTIDVTKNQVVVKGNIKFQSK-KEEINVHYS 75

Query: 61 TYNSKSLKSQSLTHQFSNNCF 81
               SLKS SL  + SN+CF
Sbjct: 76 QVKGGSLKSISL--ELSNHCF 93

[Close]

BLAST of Cp4.1LG14g09510 vs. ExPASy TrEMBL
Match: A0A6J1DJ58 (uncharacterized protein LOC111021388 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021388 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.91e-25
Identity = 56/81 (69.14%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEENGVHSQ 60
          VIVINANM CN CRQRVSQLLSK+SEL+E TIDVTK QVVVKGN+KFQ K  EE  VH  
Sbjct: 18 VIVINANMGCNRCRQRVSQLLSKMSELIEVTIDVTKNQVVVKGNIKFQSK-KEEINVHYS 77

Query: 61 TYNSKSLKSQSLTHQFSNNCF 81
               SLKS SL  + SN+CF
Sbjct: 78 QVKGGSLKSISL--ELSNHCF 95

[Close]

BLAST of Cp4.1LG14g09510 vs. TAIR 10
Match: AT2G35730.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04
Identity = 18/46 (39.13%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 1  VIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVK 47
          VI INA++ C  C+ RVS+++SK++ + E+ +D+ KK V+ +G+ +
Sbjct: 24 VIEINADVGCVACQDRVSKIVSKMTGIEEYVVDLKKKLVMARGDFR 69

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g09510 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG14g09510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553457.1	2.23e-49	100.00	uncharacterized protein LOC111810871 [Cucurbita pepo subsp. pepo]	[more]
XP_022965235.1	5.58e-45	91.36	uncharacterized protein LOC111465148 isoform X2 [Cucurbita maxima]	[more]
XP_022965234.1	5.93e-45	91.36	uncharacterized protein LOC111465148 isoform X1 [Cucurbita maxima]	[more]
KGN55871.1	9.40e-28	71.60	hypothetical protein Csa_010412 [Cucumis sativus]	[more]
XP_022154034.1	1.93e-24	69.14	uncharacterized protein LOC111021388 isoform X2 [Momordica charantia]	[more]

BLAST of Cp4.1LG14g09510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HN60	2.70e-45	91.36	uncharacterized protein LOC111465148 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HQF9	2.87e-45	91.36	uncharacterized protein LOC111465148 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0L6W5	4.55e-28	71.60	HMA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G020590 PE=4 SV...	[more]
A0A6J1DKV3	9.37e-25	69.14	uncharacterized protein LOC111021388 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DJ58	9.91e-25	69.14	uncharacterized protein LOC111021388 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Cp4.1LG14g09510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35730.1	1.2e-04	39.13	Heavy metal transport/detoxification superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006121	Heavy metal-associated domain, HMA	PFAM	PF00403	HMA	coord: 7..45 e-value: 3.8E-8 score: 33.6
IPR006121	Heavy metal-associated domain, HMA	CDD	cd00371	HMA	coord: 6..54 e-value: 9.89729E-4 score: 32.1925
None	No IPR available	GENE3D	3.30.70.100		coord: 1..63 e-value: 4.3E-9 score: 38.5
IPR036163	Heavy metal-associated domain superfamily	SUPERFAMILY	55008	HMA, heavy metal-associated domain	coord: 3..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g09510.1	Cp4.1LG14g09510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding