Cp4.1LG14g05610 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG14g05610
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ATP-dependent Clp protease ATP-binding subunit CLPT1
Location	Cp4.1LG14: 790860 .. 795458 (-)
RNA-Seq Expression	Cp4.1LG14g05610
Synteny	Cp4.1LG14g05610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTTTTTTTTTTTTAACTTCCAAAAGGTTTATCCAGAGGCGAGCCCACTAAAGCCATCTTTGTTCCAAGTTGGTATCAATTCCCTCGGGACCTGATTTCAATCTTCTCCAAAATTGAGCTTTCCTTAGCTTCTAATGGCGGCAACTCGCATGAATTCTCTTTCGCTTTCCCTAGTCCCATTTTCCCTTCCGGCTCAATCTAATTGTTACTCTTTAGAACCCAAAACTCTATTCCTTCCCGCCAGCCCTCTAATCCAGCTCAACCTCGCAATTAAGCGTTCTAATGCCACCCATTCCGTCTCGAAGTTCACTCGCCGTGCCACCACTGCCACTGTATCGTTTAGCCTCCCGGCTTCGTAAGATTTGATTGCCTCTCTTGCTTCACCGACTGATTCTTTTTCAAGTCCTCATACCTAAAATTTTGTCTTATATTGCAGGAAACCCGAGGGCGTTTCCCCAGATAAACTCCCCAAGTAAGTTTACCCCCACAAATTTTCCCCCATTCAATTAGAGACGTTCTGAAGCATGCGTCGAGCTTAAGTGGTTTTAATTGGAGTTTTTGTTGCCTGCTTTCATAACGCGTGAATATTATTTTCTAATTTAACTAATCGTTTTGAAATTTAATGTGGGATGATGATTATTCAGGTAGTTTTAAGACATCAATTTTAGTCTTTAATTTCCTGTCTGGAAGCTTTGAAATTAATTTTAGTCTTTGTGCATTTGAAACTATTTGCTGATATGTTAAGTCATAATCTAGCGTGGCCAATGTATGACCTCTTACTCGATGCACATCATTGAATGACTTCATATCTTTCTCTTTTTGGTTGTACGATTTTTTCTCATCAATACAAATTGGTTTTCCAGCATGTCAGCATATCATAGCTGTTGAATCATTTGCTATAGGACTTATCCTTTTCCACATTAGATTGTCGATTAATGCAGAAATGATAGTGGTGTTAATTGTTTGTTGAATTTGTTTTGTATAAGATGGTCAGCAAGAGCAATAAAGTCATTTGCAATGGGAGAATTGGAAGCAAGGAAACTCAAATATCCAAATACAGGCACAGAAGCTTTGTTAATGGGAATTTTAATCGAGGGTTGGTAGTCGTTCCATCTCTGAGGTCATTTATTTTTTACATTTAAATTTAGACTTGCTTATTGATTTAGTTTAGTTGAATGCAGTTAAATTACGGAACTATATGAATCTTGGTCCCTTCTTTAAGGAAAATAATGCTAAAATCAAGATCATTTCCTGAGGAGTTAGCACATGATGATCACTTTCAAATGTGGCTACTTCCCTTTCCAGCATCATTTCATGATATCTTCCATTGTCATCTGATGTCTCTCATGTGCAACTACGGAACTGTTTTGAAAGACTTAGTTTATGTTAAAGAATTCGACAAGGAAGCTTATGTTCGTGTCAGCTCCTGTTAGATGATGAGTATGAGTAACCTATCTTTGACAGTAGCCTTGGGCTACTGGCAGCATGCTTTTTGTATGTCCTCAGGCTTAATAGCTAGTAGTACTCATGGTGAAGTTAATCGATAATTTTCAACCTTGTTCAGAAAAAGGAGATAGGATTAAGAAATGATAAACTATAGTTGCATATACCCTTTGGTTGCAATCTTTAATTTTTTCGACATATATTTGTTCATATTCTTTTCAGGAACAAATATTGCTGCCAGATTCTTAAGGGCTAACGGAATTACACTTTTCAAGGTAAGAGAAGAAACTGTCAAGCTACTTGGAAAATCTGACATGTATTTCTTCAGCCCAGAGCATCCTCCATTGACTGAATCTGCTCAGAGGGCACTTGATTGGGCTGTTGCAGAGAAGTTAAAGTCCGGTGAGATCATTCTTCCTTCGTGCAGCCAATTTGATTCTTATTTAGCCTGAAAGTGAGTGATAATACTTGAGTTTTCTACTGAAAGCTCTATGCATGCATTTTAATTGTAAAGAAATCAGATAATTCTTAACAGCTTGATTGGAAAGTAAAGAAATCAGATGACGGGAGGTTAGGCGTGCTTTTATCACAGGCTTCTTAACAGCTTGATTGGAAAGTAATCAGATAATTCTTCCACGGCTAGGATAGTGAATAAATGATTTCCCAATCATGCTTACCTCAATAGAAAAGTGAATAAATGCTTTTAGAATTATGCTTAATGCAACTAGCTACCATATGTTAGTCTAGTGGTCAAAAGGGTTATGTAAATAATCAAGGGCTTAGATAGAGTGAGTTCAAGTATGGTGGTCATCGTTTGAGTCAATCAAATGTAGTAGGGTAAAACAATTGTCTCATGTGAATAATTGAGAATAGTCAAGGTACGCGCAAACGGGTTTGGACACACCAATATTAAAAAAAAAAAAAAAAAAAAAAAAATGCTATGCTTGCTGCAATTTCATGGCTGGTGCTTCTTTCATCAAAGAGATTATAAGTTGTTTTTGCCTACCCGAAATAAAGACTTAGTTGTAAAGCATTCATTTTTTCATTTAGCATGAAACACCCGCTTGCAAAGATTTTCGTCGATCTTTTTGGCCATTTAATTGAAGAAGGATTATCTAGTTGTTCACAAAGCATGTACAAATGTGCACAAGTATGTTTCAACTTCTTGATTGTAGATTTTGACTAGAACGATATCACCTTTGTGCATTTTATTAGGTCTTTTGCTTGTGGTAGTCTTCCTTGATTGAACCTAAGGTCTTATATGCAGGCCAATCTGGAGAAATAACTACAGGTCATTTGCTTCTTGCTATTTGGTCAGAGGAATCGGCAGGTCGCAAGATCTTGGCCACCCTTGGCTTTGATGATGAGAAAGCGAAAGAGATTGAAAAAACCGTAAGTTTTAAGTTGTTTTTTTTGTAATTAGTAGCACCCTCTGGACTTGATGATATACTCCACCAATACGTTTTCATTGTTCACAGGTGGACAATGATGCAACTTTCAGTTATAAGTAGATGGATTGTGTAGGAAGATGTGATGCAATTTTCATATCTTCGTGGATGGAATCCTCACAAAGGAACGCCCAAATGAAACTCATATGACTTGGACCCTCGTGCATCCATTGGTTGTATAGCGATTTGCCTGTTTAATCAGCACCTGCCGCTCAACATTATCAGATTCATTTTGAATTGGCTATTGTTCGAACTTGTGGAGTGCTGGTATGGTACGCTACATTTTAGTGGTCTCAAATGGCTTGCAGGGCATAGTTTTCTTACTGTGGCTTTTTTTGGACAAGCTGAAAAGTGAATAATAACCCCTATATTTAATACATAAGATTCTTAATTTAATCTTTGCAAGCCATCCACGATTACTTTTCAATCTTAGTATTTAAATTTTTACCTTTGTTTCATTATGCTTCTTAATACATGGGGTTGAATAGTAATGAAAAGTCTTAGCAATTTGTCAAACTTTACTTGATCAACTGCGGTAGATATGAATATTTTAAATTTGAATTATTGTTTGACTTGAGAGATTATTGTTAAGCTGGGCCCTTATGCATATTCTCCTAGTTTAGTGCATTATCGAGTAAGTGGATGTAGATGTAATGATAATGAGTGCATTTTAGATATATCTTAATAAACATGATCCCCATTAAGTGTTTCCCCACTGCCTATTTCTTCTTGTTCTCTTGTGTTTAACATATTGAAATTTACAATCTAAACAGCGTTTCTCATTGAATAAGCTGAGAAGCTTCTTGTCTATTACTCTGGTTGAATTGGTATTAGTGGATATGATATGATATGGTTGCCATGGTGAAAGGGACCAACTTTAGTGGACCGACGTAAGAACAGGTCCATGTATCAGAAACGGCCATGTTTGTCATTTCCAAAGTTTATAAAAGCATCATTCTGATTCAGCCATTGAGTGAATGCATTGTCTCTGGCCACTTTCTAGTCACTAGCCAAAACTTAAACAGTTCAAGTTTGCGTGCATAATTCTTTGCATCTAGTCGATTGGATAGAGTTTGGAACATGAAGCAACCGCATCTTTTTGACTTCTTAGTAGTTCTGCTGAAAGTTGAATGTGATTGTTGCGTCGTCCTCTGTGAAACCATCTGTCATTTCTTCCTTTCCTTCTCCTTTTTTGCCCAAATGGGTTTCTTTGGTGGCATTTTCTTAGCTGATATAGGCTCAAAATGCATAAACATGGCTTGAACTTGCGCCCTTGCTCTAAGGTAACCATCATTACCCTAAGAACAATCATATAACTATTTCCATTTCAGCTATGAGTTAAACTTTTTCTAGTTTTAGTTGAAATGACAGTTTCAATAAAAACAGGTAAATTAGAGGAAGAATTTGCTTGTTGAGCAGGACCTGAAGCACTTGTGTAAGGGGAATAATTGTGCGCTTAAAATGATGATGCTACACGTGCGCATTAGGTCATCCTTATATATATCTATGGCGAAGCATAATGTCATTGGGTATGTTCGTAACGTGTTTCTTCTTTTTGGCCATTATCTTTGTGGCCATGTCTTGTTAAAGTGGGGCAATGCCTCCTCAATTTCTGTTCAATAGCGATTAGCCCCTCTCTCCCCTTCTACTCCTCATCTTCCAAAAGTATATGCAATAATAGAAATTGTTTTTGTAATCTTAGGG

mRNA sequence

TTTTTTTTTTTTTTTTTTAACTTCCAAAAGGTTTATCCAGAGGCGAGCCCACTAAAGCCATCTTTGTTCCAAGTTGGTATCAATTCCCTCGGGACCTGATTTCAATCTTCTCCAAAATTGAGCTTTCCTTAGCTTCTAATGGCGGCAACTCGCATGAATTCTCTTTCGCTTTCCCTAGTCCCATTTTCCCTTCCGGCTCAATCTAATTGTTACTCTTTAGAACCCAAAACTCTATTCCTTCCCGCCAGCCCTCTAATCCAGCTCAACCTCGCAATTAAGCGTTCTAATGCCACCCATTCCGTCTCGAAGTTCACTCGCCGTGCCACCACTGCCACTGTATCGTTTAGCCTCCCGGCTTCGAAACCCGAGGGCGTTTCCCCAGATAAACTCCCCAAATGGTCAGCAAGAGCAATAAAGTCATTTGCAATGGGAGAATTGGAAGCAAGGAAACTCAAATATCCAAATACAGGCACAGAAGCTTTGTTAATGGGAATTTTAATCGAGGGAACAAATATTGCTGCCAGATTCTTAAGGGCTAACGGAATTACACTTTTCAAGGTAAGAGAAGAAACTGTCAAGCTACTTGGAAAATCTGACATGTATTTCTTCAGCCCAGAGCATCCTCCATTGACTGAATCTGCTCAGAGGGCACTTGATTGGGCTGTTGCAGAGAAGTTAAAGTCCGGCCAATCTGGAGAAATAACTACAGGTCATTTGCTTCTTGCTATTTGGTCAGAGGAATCGGCAGGTCGCAAGATCTTGGCCACCCTTGGCTTTGATGATGAGAAAGCGAAAGAGATTGAAAAAACCGTGGACAATGATGCAACTTTCAGTTATAAGTAGATGGATTGTGTAGGAAGATGTGATGCAATTTTCATATCTTCGTGGATGGAATCCTCACAAAGGAACGCCCAAATGAAACTCATATGACTTGGACCCTCGTGCATCCATTGGTTGTATAGCGATTTGCCTGTTTAATCAGCACCTGCCGCTCAACATTATCAGATTCATTTTGAATTGGCTATTGTTCGAACTTGTGGAGTGCTGGTATGGTACGCTACATTTTAGTGGTCTCAAATGGCTTGCAGGGCATAGTTTTCTTACTGTGGCTTTTTTTGGACAAGCTGAAAAGTGAATAATAACCCCTATATTTAATACATAAGATTCTTAATTTAATCTTTGCAAGCCATCCACGATTACTTTTCAATCTTAGTATTTAAATTTTTACCTTTGTTTCATTATGCTTCTTAATACATGGGGTTGAATAGTAATGAAAAGTCTTAGCAATTTGTCAAACTTTACTTGATCAACTGCGGTAGATATGAATATTTTAAATTTGAATTATTGTTTGACTTGAGAGATTATTGTTAAGCTGGGCCCTTATGCATATTCTCCTAGTTTAGTGCATTATCGAGTAAGTGGATGTAGATGTAATGATAATGAGTGCATTTTAGATATATCTTAATAAACATGATCCCCATTAAGTGTTTCCCCACTGCCTATTTCTTCTTGTTCTCTTGTGTTTAACATATTGAAATTTACAATCTAAACAGCGTTTCTCATTGAATAAGCTGAGAAGCTTCTTGTCTATTACTCTGGTTGAATTGGTATTAGTGGATATGATATGATATGGTTGCCATGGTGAAAGGGACCAACTTTAGTGGACCGACGTAAGAACAGGTCCATGTATCAGAAACGGCCATGTTTGTCATTTCCAAAGTTTATAAAAGCATCATTCTGATTCAGCCATTGAGTGAATGCATTGTCTCTGGCCACTTTCTAGTCACTAGCCAAAACTTAAACAGTTCAAGTTTGCGTGCATAATTCTTTGCATCTAGTCGATTGGATAGAGTTTGGAACATGAAGCAACCGCATCTTTTTGACTTCTTAGTAGTTCTGCTGAAAGTTGAATGTGATTGTTGCGTCGTCCTCTGTGAAACCATCTGTCATTTCTTCCTTTCCTTCTCCTTTTTTGCCCAAATGGGTTTCTTTGGTGGCATTTTCTTAGCTGATATAGGCTCAAAATGCATAAACATGGCTTGAACTTGCGCCCTTGCTCTAAGGTAAATTAGAGGAAGAATTTGCTTGTTGAGCAGGACCTGAAGCACTTGTGTAAGGGGAATAATTGTGCGCTTAAAATGATGATGCTACACGTGCGCATTAGGTCATCCTTATATATATCTATGGCGAAGCATAATGTCATTGGGTATGTTCGTAACGTGTTTCTTCTTTTTGGCCATTATCTTTGTGGCCATGTCTTGTTAAAGTGGGGCAATGCCTCCTCAATTTCTGTTCAATAGCGATTAGCCCCTCTCTCCCCTTCTACTCCTCATCTTCCAAAAGTATATGCAATAATAGAAATTGTTTTTGTAATCTTAGGG

Coding sequence (CDS)

ATGGCGGCAACTCGCATGAATTCTCTTTCGCTTTCCCTAGTCCCATTTTCCCTTCCGGCTCAATCTAATTGTTACTCTTTAGAACCCAAAACTCTATTCCTTCCCGCCAGCCCTCTAATCCAGCTCAACCTCGCAATTAAGCGTTCTAATGCCACCCATTCCGTCTCGAAGTTCACTCGCCGTGCCACCACTGCCACTGTATCGTTTAGCCTCCCGGCTTCGAAACCCGAGGGCGTTTCCCCAGATAAACTCCCCAAATGGTCAGCAAGAGCAATAAAGTCATTTGCAATGGGAGAATTGGAAGCAAGGAAACTCAAATATCCAAATACAGGCACAGAAGCTTTGTTAATGGGAATTTTAATCGAGGGAACAAATATTGCTGCCAGATTCTTAAGGGCTAACGGAATTACACTTTTCAAGGTAAGAGAAGAAACTGTCAAGCTACTTGGAAAATCTGACATGTATTTCTTCAGCCCAGAGCATCCTCCATTGACTGAATCTGCTCAGAGGGCACTTGATTGGGCTGTTGCAGAGAAGTTAAAGTCCGGCCAATCTGGAGAAATAACTACAGGTCATTTGCTTCTTGCTATTTGGTCAGAGGAATCGGCAGGTCGCAAGATCTTGGCCACCCTTGGCTTTGATGATGAGAAAGCGAAAGAGATTGAAAAAACCGTGGACAATGATGCAACTTTCAGTTATAAGTAG

Protein sequence

MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTRRATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGILIEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKLKSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK

Homology

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BLAST of Cp4.1LG14g05610 vs. ExPASy Swiss-Prot
Match: Q93WL3 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPT1 PE=1 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 4.0e-61
Identity = 114/176 (64.77%), Postives = 146/176 (82.95%), Query Frame = 0


Query: 60  RRATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGI 119
           R  T+A+   ++P ++PE  S DK+PKWSARAIKS AMGELEARKLKYP+TGTEA+LMGI
Sbjct: 59  RCLTSASTVLNVPIAQPENGSSDKIPKWSARAIKSLAMGELEARKLKYPSTGTEAILMGI 118

Query: 120 LIEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEK 179
           L+EGT+  A+FLR NG+TLFKVR+ET+ LLGKSDMYFFSPEHPPLTE AQ+A+ WA+ EK
Sbjct: 119 LVEGTSTVAKFLRGNGVTLFKVRDETLSLLGKSDMYFFSPEHPPLTEPAQKAIAWAIDEK 178

Query: 180 LKSGQSGEITTGHLLLAIWSE-ESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK 235
            KS   GE+TT +LLL +WS+ +SAGR+IL  LGF+++KAKE+EK+++ D   S+K
Sbjct: 179 NKSDVDGELTTAYLLLGVWSQKDSAGRQILEKLGFNEDKAKEVEKSMNEDVDLSFK 234

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BLAST of Cp4.1LG14g05610 vs. ExPASy Swiss-Prot
Match: Q8GW78 (ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPT2 PE=1 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 3.0e-56
Identity = 118/165 (71.52%), Postives = 134/165 (81.21%), Query Frame = 0


Query: 60  RRATTATVSFSLPASKPEGVSPD-KLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMG 119
           RR   + +S SLP + P+ V  D K PKWS RAIKSFAMGELEARKLKYPNTGTEALLMG
Sbjct: 67  RRIHKSAIS-SLPTANPDLVVSDAKKPKWSWRAIKSFAMGELEARKLKYPNTGTEALLMG 126

Query: 120 ILIEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAE 179
           ILIEGT+  ++FLRAN I L+KVREETVKLLGK+DMYFFSPEHPPLTE AQRALD A+ +
Sbjct: 127 ILIEGTSFTSKFLRANKIMLYKVREETVKLLGKADMYFFSPEHPPLTEDAQRALDSALDQ 186

Query: 180 KLKSGQSGEITTGHLLLAIWSE-ESAGRKILATLGFDDEKAKEIE 223
            LK+G  GE+   H+LL IWSE ES G KILATLGF DEK+KE+E
Sbjct: 187 NLKAGGIGEVMPAHILLGIWSEVESPGHKILATLGFTDEKSKELE 230

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BLAST of Cp4.1LG14g05610 vs. ExPASy Swiss-Prot
Match: Q2QVG9 (Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CLPC2 PE=2 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-11
Identity = 53/168 (31.55%), Postives = 88/168 (52.38%), Query Frame = 0


Query: 48  RSNATHSVSKFTRRATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMGELEARKLKY 107
           RS  + SV+  T   +T     S    +   V+     +++ +AIK   + + EAR+L +
Sbjct: 53  RSVHSFSVTPVTNFRSTVASYRSRRGRRARFVTRSMFERFTEKAIKVIMLAQEEARRLGH 112

Query: 108 PNTGTEALLMGILIEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTES 167
              GTE +L+G++ EGT IAA+ L++ GI L   R E  K++G+ +   F     P T  
Sbjct: 113 NFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGN--GFVAVEIPFTPR 172

Query: 168 AQRALDWAVAEKLKSGQSGEITTGHLLLAIWSE-ESAGRKILATLGFD 215
           A+R L+ ++ E  + G +  I + HLLL +  E E    ++L +LG D
Sbjct: 173 AKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLESLGAD 217

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BLAST of Cp4.1LG14g05610 vs. ExPASy Swiss-Prot
Match: Q7F9I1 (Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CLPC1 PE=2 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 2.2e-11
Identity = 47/138 (34.06%), Postives = 76/138 (55.07%), Query Frame = 0


Query: 78  GVSPDKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGILIEGTNIAARFLRANGIT 137
           GV      +++ +AIK   + + EAR+L +   GTE +L+G++ EGT IAA+ L++ GI 
Sbjct: 82  GVVRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGIN 141

Query: 138 LFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKLKSGQSGEITTGHLLLAI 197
           L   R E  K++G+     F     P T  A+R L+ ++ E  + G +  I + HLLL +
Sbjct: 142 LKDARVEVEKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGL 201

Query: 198 WSE-ESAGRKILATLGFD 215
             E E    ++L +LG D
Sbjct: 202 LREGEGVAARVLESLGAD 216

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BLAST of Cp4.1LG14g05610 vs. ExPASy Swiss-Prot
Match: P46523 (ATP-dependent Clp protease ATP-binding subunit ClpA homolog, chloroplastic (Fragment) OS=Brassica napus OX=3708 GN=CLPA PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-11
Identity = 49/149 (32.89%), Postives = 80/149 (53.69%), Query Frame = 0


Query: 68  SFSLPASK-PEGVSPDKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGILIEGTNI 127
           + ++P  K   GV      +++ +AIK   + + EAR+L +   GTE +L+G++ EGT I
Sbjct: 25  AMNVPKGKGSRGVVKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGI 84

Query: 128 AARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKLKSGQSG 187
           AA+ L++ GI L   R E  K++G+     F     P T  A+R L+ ++ E  + G + 
Sbjct: 85  AAKVLKSMGINLKDARVEVEKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN- 144

Query: 188 EITTGHLLLAIWSE-ESAGRKILATLGFD 215
            I + HLLL +  E E    ++L  LG D
Sbjct: 145 YIGSEHLLLGLLREGEGVAARVLENLGAD 170

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BLAST of Cp4.1LG14g05610 vs. NCBI nr
Match: XP_023552673.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 452 bits (1164), Expect = 3.23e-160
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR 60
           MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR
Sbjct: 1   MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR 60

Query: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGIL 120
           RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180
           IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL
Sbjct: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180

Query: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK 234
           KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK
Sbjct: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK 234

[Close]

BLAST of Cp4.1LG14g05610 vs. NCBI nr
Match: KAG6576777.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014811.1 ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 450 bits (1158), Expect = 2.65e-159
Identity = 233/234 (99.57%), Postives = 233/234 (99.57%), Query Frame = 0


Query: 1   MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR 60
           MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR
Sbjct: 1   MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR 60

Query: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGIL 120
           RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAM ELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180
           IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL
Sbjct: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180

Query: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK 234
           KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK
Sbjct: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK 234

[Close]

BLAST of Cp4.1LG14g05610 vs. NCBI nr
Match: XP_022922794.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 443 bits (1139), Expect = 2.09e-156
Identity = 230/234 (98.29%), Postives = 230/234 (98.29%), Query Frame = 0


Query: 1   MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR 60
           MAATRMNSLSLSLVP SLPAQSNCYSLEPKTLFLP SPLIQLNLAIKRSNATHSVSKFTR
Sbjct: 1   MAATRMNSLSLSLVPCSLPAQSNCYSLEPKTLFLPVSPLIQLNLAIKRSNATHSVSKFTR 60

Query: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGIL 120
           RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAM ELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180
           IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL
Sbjct: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180

Query: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK 234
           KSGQSGEITTGHLLLAIWSEESAGRKILATLGFD EKAKEIEKTVDNDATFSYK
Sbjct: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDGEKAKEIEKTVDNDATFSYK 234

[Close]

BLAST of Cp4.1LG14g05610 vs. NCBI nr
Match: XP_022984197.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 436 bits (1121), Expect = 1.16e-153
Identity = 226/234 (96.58%), Postives = 228/234 (97.44%), Query Frame = 0


Query: 1   MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR 60
           MAATRMNSLSLSLVP SLPAQSNCYSLEPKTLFLP SPLIQLNLAI+RSNATHS+SK TR
Sbjct: 1   MAATRMNSLSLSLVPCSLPAQSNCYSLEPKTLFLPVSPLIQLNLAIERSNATHSISKSTR 60

Query: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGIL 120
           RATTA VSFSLPASKPEGVSPDKLPKWSARAIKSFAM ELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTAIVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180
           IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL
Sbjct: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180

Query: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK 234
           KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVD DATFSYK
Sbjct: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDKDATFSYK 234

[Close]

BLAST of Cp4.1LG14g05610 vs. NCBI nr
Match: XP_022141304.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 418 bits (1074), Expect = 1.69e-146
Identity = 215/234 (91.88%), Postives = 222/234 (94.87%), Query Frame = 0


Query: 1   MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR 60
           MAATR+NSLSLS VPFSL  QSNCY+LE KTLFLP SPL +L LAIKRSN THSVSKFTR
Sbjct: 1   MAATRLNSLSLSQVPFSLATQSNCYNLEHKTLFLPVSPLFELKLAIKRSNVTHSVSKFTR 60

Query: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGIL 120
           RATTATVSFSLPA+KPEGVSPDKLPKWSARAIKSFAM ELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPATKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180
           IEGT+IAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTE AQRALDWAVAEKL
Sbjct: 121 IEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKL 180

Query: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK 234
           KSG+SGEITTGHLLL IWSEESAGRKILATLGFDDEKAKEIEK+VD DATFSYK
Sbjct: 181 KSGESGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKSVDKDATFSYK 234

[Close]

BLAST of Cp4.1LG14g05610 vs. ExPASy TrEMBL
Match: A0A6J1E4F8 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111430678 PE=4 SV=1)

HSP 1 Score: 443 bits (1139), Expect = 1.01e-156
Identity = 230/234 (98.29%), Postives = 230/234 (98.29%), Query Frame = 0


Query: 1   MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR 60
           MAATRMNSLSLSLVP SLPAQSNCYSLEPKTLFLP SPLIQLNLAIKRSNATHSVSKFTR
Sbjct: 1   MAATRMNSLSLSLVPCSLPAQSNCYSLEPKTLFLPVSPLIQLNLAIKRSNATHSVSKFTR 60

Query: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGIL 120
           RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAM ELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180
           IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL
Sbjct: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180

Query: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK 234
           KSGQSGEITTGHLLLAIWSEESAGRKILATLGFD EKAKEIEKTVDNDATFSYK
Sbjct: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDGEKAKEIEKTVDNDATFSYK 234

[Close]

BLAST of Cp4.1LG14g05610 vs. ExPASy TrEMBL
Match: A0A6J1J1K1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111482587 PE=4 SV=1)

HSP 1 Score: 436 bits (1121), Expect = 5.61e-154
Identity = 226/234 (96.58%), Postives = 228/234 (97.44%), Query Frame = 0


Query: 1   MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR 60
           MAATRMNSLSLSLVP SLPAQSNCYSLEPKTLFLP SPLIQLNLAI+RSNATHS+SK TR
Sbjct: 1   MAATRMNSLSLSLVPCSLPAQSNCYSLEPKTLFLPVSPLIQLNLAIERSNATHSISKSTR 60

Query: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGIL 120
           RATTA VSFSLPASKPEGVSPDKLPKWSARAIKSFAM ELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTAIVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180
           IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL
Sbjct: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180

Query: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK 234
           KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVD DATFSYK
Sbjct: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDKDATFSYK 234

[Close]

BLAST of Cp4.1LG14g05610 vs. ExPASy TrEMBL
Match: A0A6J1CI79 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111011733 PE=4 SV=1)

HSP 1 Score: 418 bits (1074), Expect = 8.18e-147
Identity = 215/234 (91.88%), Postives = 222/234 (94.87%), Query Frame = 0


Query: 1   MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR 60
           MAATR+NSLSLS VPFSL  QSNCY+LE KTLFLP SPL +L LAIKRSN THSVSKFTR
Sbjct: 1   MAATRLNSLSLSQVPFSLATQSNCYNLEHKTLFLPVSPLFELKLAIKRSNVTHSVSKFTR 60

Query: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGIL 120
           RATTATVSFSLPA+KPEGVSPDKLPKWSARAIKSFAM ELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPATKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180
           IEGT+IAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTE AQRALDWAVAEKL
Sbjct: 121 IEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKL 180

Query: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK 234
           KSG+SGEITTGHLLL IWSEESAGRKILATLGFDDEKAKEIEK+VD DATFSYK
Sbjct: 181 KSGESGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKSVDKDATFSYK 234

[Close]

BLAST of Cp4.1LG14g05610 vs. ExPASy TrEMBL
Match: A0A5D3E3F8 (ATP-dependent Clp protease ATP-binding subunit CLPT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1044G00010 PE=4 SV=1)

HSP 1 Score: 406 bits (1043), Expect = 4.33e-142
Identity = 209/234 (89.32%), Postives = 217/234 (92.74%), Query Frame = 0


Query: 1   MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR 60
           MAATR+NSLS S +P SLP+QSNCYSLE K L  P +PLI+L LAIKRSNATH VSKFTR
Sbjct: 1   MAATRLNSLSFSQLPLSLPSQSNCYSLEHKPLLFPLTPLIELKLAIKRSNATHPVSKFTR 60

Query: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGIL 120
           RAT ATVSFSLPASKPEGVSP+KLPKWSARAIKSFAM ELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATAATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180
           IEGT+ AA+FLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTE AQRALDWAVAEKL
Sbjct: 121 IEGTSTAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKL 180

Query: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK 234
           KSGQSGEITTGHLLL IWSEESAGRKILATLGFDDEKAKEI KTVD DATFSYK
Sbjct: 181 KSGQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIAKTVDKDATFSYK 234

[Close]

BLAST of Cp4.1LG14g05610 vs. ExPASy TrEMBL
Match: A0A1S3AY13 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103484006 PE=4 SV=1)

HSP 1 Score: 403 bits (1035), Expect = 7.17e-141
Identity = 208/234 (88.89%), Postives = 216/234 (92.31%), Query Frame = 0


Query: 1   MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR 60
           MAATR+NSLS S +P SLP+QSNCYSLE K L  P +PLI+L LAIKRSNATH VSKFTR
Sbjct: 1   MAATRLNSLSFSQLPLSLPSQSNCYSLEHKPLLFPLTPLIELKLAIKRSNATHPVSKFTR 60

Query: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGIL 120
           RAT ATVSFSLPASKPEGVSP+KLPKWSARAIKSFAM ELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATAATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180
           IEGT+ AA+FLRANGITLFKVREETVKLLGKSDMYFFS EHPPLTE AQRALDWAVAEKL
Sbjct: 121 IEGTSTAAKFLRANGITLFKVREETVKLLGKSDMYFFSSEHPPLTEPAQRALDWAVAEKL 180

Query: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK 234
           KSGQSGEITTGHLLL IWSEESAGRKILATLGFDDEKAKEI KTVD DATFSYK
Sbjct: 181 KSGQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIAKTVDKDATFSYK 234

[Close]

BLAST of Cp4.1LG14g05610 vs. TAIR 10
Match: AT4G25370.1 (Double Clp-N motif protein )

HSP 1 Score: 236.1 bits (601), Expect = 2.8e-62
Identity = 114/176 (64.77%), Postives = 146/176 (82.95%), Query Frame = 0


Query: 60  RRATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGI 119
           R  T+A+   ++P ++PE  S DK+PKWSARAIKS AMGELEARKLKYP+TGTEA+LMGI
Sbjct: 59  RCLTSASTVLNVPIAQPENGSSDKIPKWSARAIKSLAMGELEARKLKYPSTGTEAILMGI 118

Query: 120 LIEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEK 179
           L+EGT+  A+FLR NG+TLFKVR+ET+ LLGKSDMYFFSPEHPPLTE AQ+A+ WA+ EK
Sbjct: 119 LVEGTSTVAKFLRGNGVTLFKVRDETLSLLGKSDMYFFSPEHPPLTEPAQKAIAWAIDEK 178

Query: 180 LKSGQSGEITTGHLLLAIWSE-ESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK 235
            KS   GE+TT +LLL +WS+ +SAGR+IL  LGF+++KAKE+EK+++ D   S+K
Sbjct: 179 NKSDVDGELTTAYLLLGVWSQKDSAGRQILEKLGFNEDKAKEVEKSMNEDVDLSFK 234

[Close]

BLAST of Cp4.1LG14g05610 vs. TAIR 10
Match: AT4G12060.1 (Double Clp-N motif protein )

HSP 1 Score: 219.9 bits (559), Expect = 2.1e-57
Identity = 118/165 (71.52%), Postives = 134/165 (81.21%), Query Frame = 0


Query: 60  RRATTATVSFSLPASKPEGVSPD-KLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMG 119
           RR   + +S SLP + P+ V  D K PKWS RAIKSFAMGELEARKLKYPNTGTEALLMG
Sbjct: 67  RRIHKSAIS-SLPTANPDLVVSDAKKPKWSWRAIKSFAMGELEARKLKYPNTGTEALLMG 126

Query: 120 ILIEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAE 179
           ILIEGT+  ++FLRAN I L+KVREETVKLLGK+DMYFFSPEHPPLTE AQRALD A+ +
Sbjct: 127 ILIEGTSFTSKFLRANKIMLYKVREETVKLLGKADMYFFSPEHPPLTEDAQRALDSALDQ 186

Query: 180 KLKSGQSGEITTGHLLLAIWSE-ESAGRKILATLGFDDEKAKEIE 223
            LK+G  GE+   H+LL IWSE ES G KILATLGF DEK+KE+E
Sbjct: 187 NLKAGGIGEVMPAHILLGIWSEVESPGHKILATLGFTDEKSKELE 230

[Close]

BLAST of Cp4.1LG14g05610 vs. TAIR 10
Match: AT5G50920.1 (CLPC homologue 1 )

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-12
Identity = 45/130 (34.62%), Postives = 73/130 (56.15%), Query Frame = 0


Query: 86  KWSARAIKSFAMGELEARKLKYPNTGTEALLMGILIEGTNIAARFLRANGITLFKVREET 145
           +++ +AIK   + + EAR+L +   GTE +L+G++ EGT IAA+ L++ GI L   R E 
Sbjct: 97  RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEV 156

Query: 146 VKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKLKSGQSGEITTGHLLLAIWSE-ESAG 205
            K++G+     F     P T  A+R L+ ++ E  + G +  I + HLLL +  E E   
Sbjct: 157 EKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVA 216

Query: 206 RKILATLGFD 215
            ++L  LG D
Sbjct: 217 ARVLENLGAD 223

[Close]

BLAST of Cp4.1LG14g05610 vs. TAIR 10
Match: AT3G48870.1 (Clp ATPase )

HSP 1 Score: 69.3 bits (168), Expect = 4.6e-12
Identity = 45/130 (34.62%), Postives = 73/130 (56.15%), Query Frame = 0


Query: 86  KWSARAIKSFAMGELEARKLKYPNTGTEALLMGILIEGTNIAARFLRANGITLFKVREET 145
           +++ +AIK   + + EAR+L +   GTE +L+G++ EGT IAA+ L++ GI L   R E 
Sbjct: 117 RFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDSRVEV 176

Query: 146 VKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKLKSGQSGEITTGHLLLAIWSE-ESAG 205
            K++G+     F     P T  A+R L+ ++ E  + G +  I + HLLL +  E E   
Sbjct: 177 EKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVA 236

Query: 206 RKILATLGFD 215
            ++L  LG D
Sbjct: 237 ARVLENLGAD 243

[Close]

BLAST of Cp4.1LG14g05610 vs. TAIR 10
Match: AT3G48870.2 (Clp ATPase )

HSP 1 Score: 69.3 bits (168), Expect = 4.6e-12
Identity = 45/130 (34.62%), Postives = 73/130 (56.15%), Query Frame = 0


Query: 86  KWSARAIKSFAMGELEARKLKYPNTGTEALLMGILIEGTNIAARFLRANGITLFKVREET 145
           +++ +AIK   + + EAR+L +   GTE +L+G++ EGT IAA+ L++ GI L   R E 
Sbjct: 86  RFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDSRVEV 145

Query: 146 VKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKLKSGQSGEITTGHLLLAIWSE-ESAG 205
            K++G+     F     P T  A+R L+ ++ E  + G +  I + HLLL +  E E   
Sbjct: 146 EKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVA 205

Query: 206 RKILATLGFD 215
            ++L  LG D
Sbjct: 206 ARVLENLGAD 212

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g05610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93WL3	4.0e-61	64.77	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic OS=Arabidops...	[more]
Q8GW78	3.0e-56	71.52	ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic OS=Arabidops...	[more]
Q2QVG9	1.0e-11	31.55	Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q7F9I1	2.2e-11	34.06	Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
P46523	2.9e-11	32.89	ATP-dependent Clp protease ATP-binding subunit ClpA homolog, chloroplastic (Frag...	[more]

BLAST of Cp4.1LG14g05610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023552673.1	3.23e-160	100.00	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurb...	[more]
KAG6576777.1	2.65e-159	99.57	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic, partial [Cu...	[more]
XP_022922794.1	2.09e-156	98.29	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurb...	[more]
XP_022984197.1	1.16e-153	96.58	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurb...	[more]
XP_022141304.1	1.69e-146	91.88	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Momord...	[more]

BLAST of Cp4.1LG14g05610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E4F8	1.01e-156	98.29	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu...	[more]
A0A6J1J1K1	5.61e-154	96.58	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu...	[more]
A0A6J1CI79	8.18e-147	91.88	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Momo...	[more]
A0A5D3E3F8	4.33e-142	89.32	ATP-dependent Clp protease ATP-binding subunit CLPT1 OS=Cucumis melo var. makuwa...	[more]
A0A1S3AY13	7.17e-141	88.89	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu...	[more]

BLAST of Cp4.1LG14g05610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25370.1	2.8e-62	64.77	Double Clp-N motif protein	[more]
AT4G12060.1	2.1e-57	71.52	Double Clp-N motif protein	[more]
AT5G50920.1	2.7e-12	34.62	CLPC homologue 1	[more]
AT3G48870.1	4.6e-12	34.62	Clp ATPase	[more]
AT3G48870.2	4.6e-12	34.62	Clp ATPase	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004176	Clp, repeat (R) domain	PFAM	PF02861	Clp_N	coord: 185..223 e-value: 1.5E-7 score: 31.4 coord: 101..150 e-value: 3.5E-9 score: 36.7
IPR004176	Clp, repeat (R) domain	PROSITE	PS51903	CLP_R	coord: 84..228 score: 29.350504
IPR036628	Clp, N-terminal domain superfamily	GENE3D	1.10.1780.10		coord: 86..232 e-value: 6.2E-43 score: 148.3
IPR036628	Clp, N-terminal domain superfamily	SUPERFAMILY	81923	Double Clp-N motif	coord: 86..218
None	No IPR available	PANTHER	PTHR47016:SF1	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC	coord: 2..234
IPR044217	ATP-dependent Clp protease ATP-binding subunit CLPT1/2	PANTHER	PTHR47016	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC	coord: 2..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g05610.1	Cp4.1LG14g05610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009532	plastid stroma
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008233	peptidase activity