Cp4.1LG14g00180 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG14g00180
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	cytochrome c-type biogenesis ccda-like chloroplastic protein
Location	Cp4.1LG14: 4602691 .. 4607340 (-)
RNA-Seq Expression	Cp4.1LG14g00180
Synteny	Cp4.1LG14g00180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCACTCTCTCGCTTTGCTTATTTTTCTTCTTCTTTGAGTTTGTGAGCGGAAGAAAGCTTTGGCAACTGCCACCCACAACAGCCCGCCCCCACATCCACAGGGTCCACTTCCTTCAACCCTTCTGAGCATCCGACTATCGATTAACTCCGCTCCAAATTCCGGAGTTCTTCCCCAATTTTTCAAATGGGTTTCCTTATGACCCATTCTGGTGGTTTCGGCATCAATTCCATCAAAATTTCAACCTCTAAACCTTTACTCGGCAGGCCGCCAGGTAATACCTCTAATTTGGTTGCCGTTGTCGGTTGAAATGATTCCCTTCTCTGTCTGTATACCTATGGGAGTGGCGAATACTTTTGAACTGTGGGGGATGTTTTGATCACCATGTATATTCAACTTTCTAATAGAGGCTCACTGGTTTCTTTAGGTAAATATGTCGCCCCTTTGAAATTTCTTGGGGGACAATCCGCAGCTCAGGATCAAACTAAAGATATTGATGAGTTAGTGGAGAGTACAAACAGCAGCAATCATTTTCATGCCATGGCTTTTGTAAATGCCGTTTCTGGTAATCCTAATAACTTATCCAAGTCTTGTGTGGATATGGATTATTCTGTTTTGATTATAGTTTGTTCATTACATAACTATGATTGGCAATTTCATAAGTAAATGAATGGATGATTCTTAAGCAATCTGAGGTTTCAACTCTGCTGGGTTTACTATGCATATTCTTAATTTTATTTCAATTTCTATGTTTCCAGCTACAAGTTTCCTTGCAGTAGACGCAGCAAAGGCTGAAAGTTTAGAGCATATGTGGGTAAGAGTTTATAGTCTTCGCATATTGTGTTTTCCAAAGCGTGTGAGATCCCACATCGGTTGGGGAGGAGCACGAAACACCCTTTATAAGGGTGTAGAAATCTCTCCTTAGCAGATGTGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGAAAAGGCCAAAGAGGATAATATCTGCCAGCGGTGAACCTGAGCCGTTACAAAGATCTCAATTTCTATATTCTTTTGAGGCTTAATTCCCTAAAATCCATTCATTTAATTATTTTTAAAGATGTTGATTAATATTTTCAGCAATTCCTTTAGAATCTTGATGAAATCTATGTGTATTTCTATTTTCCCTTGGTCATATAAGAATGGTTACTTCATTATGACTGCAAAAGAAACTGAAGCTTGGTAACAGGGCTGCTCTTTAGCATTACTCGCCATCTTAGCTTGCTTGCTTGAGATGTTGGTCTCTATAAATTGGATATCATGGTAAATAAATTAGTCGGCGTACGTATATTGCTTGGTGTATAACTGTATATTATATCAGGAACTAGAATTATTTTCCTTCAAGTCAGGAAGGAGCTGCTTCTGTTTATACACTGGCTGATGGTGGCATTGGAGATTGGATTGGAGGCTTCTTGTATTCAGCTGGACAACAGGCTAATGTTGCAGTTCAGGATCAGTTATCTGCTCTGAGTTTTACTAGGTTCAGTCTGGTTTTTCTTCCCTTTACTTTTCATGGCTTTTAATGATTTGAATTTGATAGTAAACGGCTCTTTTCTATTCCTATATACAGTTTGGCAGTAATTTTTGGAGCAGGGTTTGTAACCAGCCTTTCCCCTTGTACGCTGAGTGTTTTGCCTTTGACACTTGGTTACATAGGTAAGCATTTTGTACACTCGTTTTCGAAATTTCGGGATGTTATTTGGTGTCTCGTGTTAATGTGGTGATCCAATGGAACTTTGTAGGAGCATTTGGATCAGGGAAGAGCAGAGCAGAGGTAAATTATTTTCTAAGCGAGTTTCGGTTTTCTCCTCTTGCTCTGTTTGACGTAGTATCAAATTGTAGAAATGTTTTAATTAATTAAGCTCCGGATGTTTGGCAATACATTCAAGGTCCTAGGCTCAGCCTTTGAGGCTAAAAACTTAGGCCCAGTTTGATAACGATTTTGTTTTGTCTTCCCATAACATGTTTTCCACCTTTCTTAAAGAAACACTTGAATTCATAGTCAAATTTTTAAAACGAAAACAAGTTTTTTATCACAGTTTTTCTTCTCATTTTCAAAACTTGACTTAGTTTTTGAAAACATTGGTCAAAAGTGAATAACAAAACAAATAAACTTATAGGTAGAGTTAGTTTTACAGCCCAAGCCCACTGCTAGCAGATATTGTCTTCTTTGGGCTTTTCCTTTCGGGCTTCCCCTCAAGGTTTTTAAAACGCGTTTACTAGAGAGAGGTTTCCACACCCTTATAAAGAATGATCCATTCCCCTCTTCAACCGATGTGGGATCTCACAATTAGTGCTTATAAGTTTAATTTTAAATAAACAAGAAAAACCAAATGGTTATCAAATGGGTCTTTAGTAATTTAAAACCCATATTGTCTATGAATTTGGGCTTTGGGTAGACGTATCCTTTGCGGGGTTAGTGGCGTCGGTCATGAGTATATATATTGTAAGGAGCTAGTAGCCTTCAACAACATGGTTACAGAAAAATAATAGTAATGAACCAGGACTAGAAAGAAACTATTCAATGGTTCTATGATGCCAGAGTCTTCATAGTTCTTCCTCTACTTTGAACTTGAGAGCATTTCTATTGAAATCCGTCTGATCTGATGCTTGGGATGAATATGCATGTTTAGGTGAGATAGTTTCCGTGGAAATTGTAAAAAATACGTGCTGACGGTCGTGCGTTGAGACAGACAGTTAATTGGAATTTGAATTGGTCTCTTCTTATTTTCAGGTTGTTGGAAACTCTGTTGCTTTTGCATTAGGACTTGCTACGACCCTAGCACTGTTAGGCATAGCAGCTTCCTTTGCTGGAAAGGCATATGGACAGATTGGCCAAGGTTTACCATTAGCTGCTTCAGGCTTAGCTGTTATTATGGGCCTAAACCTCCTGGAGGTACTCATCAAACCTTGATTTTCTGTATCAACTACGAATTTTGTATACTAATTCTTTGTCTCATTATAAATAGATATCAGTTTCACTTATATGTAAATATTACTCTGCGAATCTTTTGATGGATTTGTTGTATAATTGATCACGAATTGCACAGATAATTGAGTTGCAACTACCCTCATTCTTCGACAATTTCGATCCCCGTTCTGCTGCTGCCAACTTTCCATCAAGTAACTGGCACCTTCATTACTTGTTGACCACTTGCTTACTCATTTGAATGCTCTAACAAGCCTTTAAATTTGATGTGTTAGGCGTGCAAGCATATCTGGCTGGGCTAACGTTTGCTTTAGCAGCATCTCCTTGCAGTACTCCTGTGCTGGCTACTTTACTTGGATATGTAGCTACATCCAAGGTGCCTTAAATCGTTTCTTATACTGATATGACTTCGATCTTAATATGATATCGACCTGTTGTCGTTTTTTATTTCATATCATAGTTTCTACCATATTATACACGAGAGCGTAAGAAGGTTATATTTGTTGGATGATGAAAGTCCCACGTCGGCTAATTTAGGTAATGATCCTGGGTTTAGAAACAAAGAATACTCTCTCCATTGGTATGAGGTCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGTTCAAAGTGGACAATATCATACTATTGTGGAGAGTCGTGTTTGTTTAACATGGTATCAGAGTCATGCCCTAAACTTAGTCGTGCCAATAGATTGGTAAATCCTCAAATGTCGAACAAAGGACTCCAAAAAGAAAAATGAGTCAAGCCTCCTCGAACGCAGTAAAAAATGACCAAGACTCCAAAGGAGTCGAGGCTCGGTTAAGGGGAGGCGTGCTTTGTTCGAGGGGAGGTATTGGATGATGAAAGTCCCACATCGGCTAATTTAGAGAATGATCATGGGTTTATAAACAGAGAATACTCTCTCCATTGGTATGAAGCCTTTTGGGGAAGGCCAAAGCAAAGCCACGAGAGCTTATGCTCAAAGTATCATACCATTGTGGAGAGTCGTGTTCGTCTAACAATATTAATCCTTTCCTTTTTAGCATTCCTGTTAGTGAGTACTCTCTTTATAACAGGATCCCATCGTCGGTGGAAGCCTCCTCTTGACGTACACAACGGGGTATGTCGTGCCGTTACTTCTTGCTGCCTCATTCGCTGGAGCATTGCAGGTAACATGGTTATATATAATAGGAATGAGAATCAGAAGAGTATCAGCTGAGCCCCATTGGGTTATTTTTTGATGCTCTAATTATTCATTTTGGATTGATTTTTTGTCCTAAACGAGTGGTTACATGAGTGCAGAGCCTTCTGTCATTCCGCAAGTTCTCATCATGGATTAATCCTATAAGGTAATTCCTTTTAAACTCATACTTCACATGAATAAGATGAACAGATGAATTGTTGATCGGTGGTGGTGGTTGTATTTGTTGTTGATGCTTGCAGTGGAGCATTACTGTTGGGGGGAGGTGTTTATAGTTTCTTGGACAGATTATTTCCAGTCACCATGGCAATGTAGAACAGATTATTTCCAGTTCTTCAATTTGATGTGGATAAGCTCAACCCTCTGTAAATGTTTATTCAACCTTCAATCATAATCATCTCTATTACCCATTTAGTGTAAGGCGTTATTTTTGAAATAACGTTGCATGTTGACGATGAAATTATCTATACTCTACGCTTCATCTTAATCAA

mRNA sequence

TATCACTCTCTCGCTTTGCTTATTTTTCTTCTTCTTTGAGTTTGTGAGCGGAAGAAAGCTTTGGCAACTGCCACCCACAACAGCCCGCCCCCACATCCACAGGGTCCACTTCCTTCAACCCTTCTGAGCATCCGACTATCGATTAACTCCGCTCCAAATTCCGGAGTTCTTCCCCAATTTTTCAAATGGGTTTCCTTATGACCCATTCTGGTGGTTTCGGCATCAATTCCATCAAAATTTCAACCTCTAAACCTTTACTCGGCAGGCCGCCAGGTAAATATGTCGCCCCTTTGAAATTTCTTGGGGGACAATCCGCAGCTCAGGATCAAACTAAAGATATTGATGAGTTAGTGGAGAGTACAAACAGCAGCAATCATTTTCATGCCATGGCTTTTGTAAATGCCGTTTCTGCTACAAGTTTCCTTGCAGTAGACGCAGCAAAGGCTGAAAGAGCTGCTTCTGTTTATACACTGGCTGATGGTGGCATTGGAGATTGGATTGGAGGCTTCTTGTATTCAGCTGGACAACAGGCTAATGTTGCAGTTCAGGATCAGTTATCTGCTCTGAGTTTTACTAGTTTGGCAGTAATTTTTGGAGCAGGGTTTGTAACCAGCCTTTCCCCTTGTACGCTGAGTGTTTTGCCTTTGACACTTGGTTACATAGGAGCATTTGGATCAGGGAAGAGCAGAGCAGAGGTTGTTGGAAACTCTGTTGCTTTTGCATTAGGACTTGCTACGACCCTAGCACTGTTAGGCATAGCAGCTTCCTTTGCTGGAAAGGCATATGGACAGATTGGCCAAGGTTTACCATTAGCTGCTTCAGGCTTAGCTGTTATTATGGGCCTAAACCTCCTGGAGATAATTGAGTTGCAACTACCCTCATTCTTCGACAATTTCGATCCCCGTTCTGCTGCTGCCAACTTTCCATCAAGCGTGCAAGCATATCTGGCTGGGCTAACGTTTGCTTTAGCAGCATCTCCTTGCAGTACTCCTGTGCTGGCTACTTTACTTGGATATGTAGCTACATCCAAGAGCCTTCTGTCATTCCGCAAGTTCTCATCATGGATTAATCCTATAAGTGGAGCATTACTGTTGGGGGGAGGTGTTTATAGTTTCTTGGACAGATTATTTCCAGTCACCATGGCAATGTAGAACAGATTATTTCCAGTTCTTCAATTTGATGTGGATAAGCTCAACCCTCTGTAAATGTTTATTCAACCTTCAATCATAATCATCTCTATTACCCATTTAGTGTAAGGCGTTATTTTTGAAATAACGTTGCATGTTGACGATGAAATTATCTATACTCTACGCTTCATCTTAATCAA

Coding sequence (CDS)

ATGGGTTTCCTTATGACCCATTCTGGTGGTTTCGGCATCAATTCCATCAAAATTTCAACCTCTAAACCTTTACTCGGCAGGCCGCCAGGTAAATATGTCGCCCCTTTGAAATTTCTTGGGGGACAATCCGCAGCTCAGGATCAAACTAAAGATATTGATGAGTTAGTGGAGAGTACAAACAGCAGCAATCATTTTCATGCCATGGCTTTTGTAAATGCCGTTTCTGCTACAAGTTTCCTTGCAGTAGACGCAGCAAAGGCTGAAAGAGCTGCTTCTGTTTATACACTGGCTGATGGTGGCATTGGAGATTGGATTGGAGGCTTCTTGTATTCAGCTGGACAACAGGCTAATGTTGCAGTTCAGGATCAGTTATCTGCTCTGAGTTTTACTAGTTTGGCAGTAATTTTTGGAGCAGGGTTTGTAACCAGCCTTTCCCCTTGTACGCTGAGTGTTTTGCCTTTGACACTTGGTTACATAGGAGCATTTGGATCAGGGAAGAGCAGAGCAGAGGTTGTTGGAAACTCTGTTGCTTTTGCATTAGGACTTGCTACGACCCTAGCACTGTTAGGCATAGCAGCTTCCTTTGCTGGAAAGGCATATGGACAGATTGGCCAAGGTTTACCATTAGCTGCTTCAGGCTTAGCTGTTATTATGGGCCTAAACCTCCTGGAGATAATTGAGTTGCAACTACCCTCATTCTTCGACAATTTCGATCCCCGTTCTGCTGCTGCCAACTTTCCATCAAGCGTGCAAGCATATCTGGCTGGGCTAACGTTTGCTTTAGCAGCATCTCCTTGCAGTACTCCTGTGCTGGCTACTTTACTTGGATATGTAGCTACATCCAAGAGCCTTCTGTCATTCCGCAAGTTCTCATCATGGATTAATCCTATAAGTGGAGCATTACTGTTGGGGGGAGGTGTTTATAGTTTCTTGGACAGATTATTTCCAGTCACCATGGCAATGTAG

Protein sequence

MGFLMTHSGGFGINSIKISTSKPLLGRPPGKYVAPLKFLGGQSAAQDQTKDIDELVESTNSSNHFHAMAFVNAVSATSFLAVDAAKAERAASVYTLADGGIGDWIGGFLYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGNSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKSLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM

Homology

[Close]

BLAST of Cp4.1LG14g00180 vs. ExPASy Swiss-Prot
Match: Q9M5P3 (Cytochrome c-type biogenesis ccda-like chloroplastic protein OS=Arabidopsis thaliana OX=3702 GN=CCDA PE=1 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 2.5e-98
Identity = 205/288 (71.18%), Postives = 227/288 (78.82%), Query Frame = 0


Query: 68  MAFVNAVSATSFLAVDAAK--AERAASVYTLADGGIGDWIGGFLYSAGQQANVAVQDQLS 127
           +   N V+ +S  A D      ++A S+Y LA+G +GD +G FLYSA QQAN AVQDQLS
Sbjct: 67  LGVANLVTLSSAKAADLKMIVLDQATSIYILAEGSLGDSVGNFLYSANQQANEAVQDQLS 126

Query: 128 ALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGNSVAFALGLATT 187
           ALS TSLAVIFGAG VTSLSPCTLSVLPLTLGYIGAFGSGKSR +V+G++VAFALGLATT
Sbjct: 127 ALSVTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRGQVIGDTVAFALGLATT 186

Query: 188 LALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDNFDPRSAAAN 247
           LALLGI ASFAGKAYGQIGQGLP+AASGLA++MGLNLLEIIELQLPSFF+NFDPR+AAAN
Sbjct: 187 LALLGIVASFAGKAYGQIGQGLPVAASGLAIVMGLNLLEIIELQLPSFFNNFDPRAAAAN 246

Query: 248 FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK----------------------- 307
           FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS+                       
Sbjct: 247 FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPVIGGSLLLTYTTGYVAPLIVA 306

Query: 308 --------SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFP-VTMAM 322
                   SLLS RK S+WINPISGALLLGGG+Y+FLDRLFP  TM M
Sbjct: 307 ASFAGALQSLLSLRKVSAWINPISGALLLGGGLYTFLDRLFPAATMVM 354

[Close]

BLAST of Cp4.1LG14g00180 vs. ExPASy Swiss-Prot
Match: Q2QY07 (Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CCDA2 PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 2.1e-97
Identity = 202/282 (71.63%), Postives = 220/282 (78.01%), Query Frame = 0


Query: 74  VSATSFLAVDAAKAER------AASVYTLADGGIGDWIGGFLYSAGQQANVAVQDQLSAL 133
           V+  S +A  AA A         +S   LAD  IGDW G  LYSAGQQAN AVQDQLSAL
Sbjct: 77  VAVGSLVAAGAANATEIGDSLLGSSGLALADLSIGDWFGNLLYSAGQQANEAVQDQLSAL 136

Query: 134 SFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGNSVAFALGLATTLA 193
           SFTSLAVIFGAG VTSLSPCTLSVLPLTLGYIGAFGSGK R+EVVGNSVAF+LGLATTLA
Sbjct: 137 SFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKDRSEVVGNSVAFSLGLATTLA 196

Query: 194 LLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDNFDPRSAAANFP 253
           +LG+AASFAGKAYGQ+GQGLP+AASGLAVIMGLNLLE+IELQLPSFF ++DPR+AAAN P
Sbjct: 197 ILGVAASFAGKAYGQVGQGLPVAASGLAVIMGLNLLEVIELQLPSFFSDYDPRAAAANLP 256

Query: 254 SSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK------------------------- 313
           SSVQAYLAGLTFALAASPCSTPVLATLLGYVATS+                         
Sbjct: 257 SSVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPIVGGSLLLTYTTGYVAPLLIAAS 316

Query: 314 ------SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVT 319
                 SLLSFR++S+WINPISGA LLGGGVY+ LDRLFP T
Sbjct: 317 FAGALQSLLSFRRYSAWINPISGAFLLGGGVYTLLDRLFPAT 358

[Close]

BLAST of Cp4.1LG14g00180 vs. ExPASy Swiss-Prot
Match: Q2RAR6 (Cytochrome c-type biogenesis ccda-like chloroplastic protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CCDA1 PE=2 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 2.8e-97
Identity = 201/282 (71.28%), Postives = 220/282 (78.01%), Query Frame = 0


Query: 74  VSATSFLAVDAAKAER------AASVYTLADGGIGDWIGGFLYSAGQQANVAVQDQLSAL 133
           V+  S +A  AA A         +S   LAD  +GDW G  LYSAGQQAN AVQDQLSAL
Sbjct: 82  VAVGSLVAAGAANATEIGDSLLGSSGLALADLSVGDWFGNLLYSAGQQANEAVQDQLSAL 141

Query: 134 SFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGNSVAFALGLATTLA 193
           SFTSLAVIFGAG VTSLSPCTLSVLPLTLGYIGAFGSGK R+EVVGNSVAF+LGLATTLA
Sbjct: 142 SFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKDRSEVVGNSVAFSLGLATTLA 201

Query: 194 LLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDNFDPRSAAANFP 253
           +LG+AASFAGKAYGQ+GQGLP+AASGLAVIMGLNLLE+IELQLPSFF ++DPR+AAAN P
Sbjct: 202 ILGVAASFAGKAYGQVGQGLPVAASGLAVIMGLNLLEVIELQLPSFFSDYDPRAAAANLP 261

Query: 254 SSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK------------------------- 313
           SSVQAYLAGLTFALAASPCSTPVLATLLGYVATS+                         
Sbjct: 262 SSVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPIVGGSLLLTYTTGYVAPLLIAAS 321

Query: 314 ------SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVT 319
                 SLLSFR++S+WINPISGA LLGGGVY+ LDRLFP T
Sbjct: 322 FAGALQSLLSFRRYSAWINPISGAFLLGGGVYTLLDRLFPAT 363

[Close]

BLAST of Cp4.1LG14g00180 vs. ExPASy Swiss-Prot
Match: P51364 (Putative cytochrome c-type biogenesis protein DbsD-like OS=Porphyra purpurea OX=2787 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.4e-16
Identity = 56/176 (31.82%), Postives = 96/176 (54.55%), Query Frame = 0


Query: 109 LYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSR 168
           LY++    N     QL+ ++  S + +F +G  TS SPC +S+LP+ + YI   G   S+
Sbjct: 7   LYNSQHLINNITLYQLNHINIASFSFVFFSGLFTSFSPCLISILPICIMYISGEGQKLSQ 66

Query: 169 AEVVGNSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIEL 228
            + + N   F LG  ++   LG+ A+   K Y Q+  G+P+ ++ + + MG +LL I+ L
Sbjct: 67  IDKLKNLFFFCLGAISSFTTLGLIATLLAKTYSQLFNGIPVISALVIIYMGFSLLNIVPL 126

Query: 229 QLPSFFDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKSL 285
                 +N + R    N   +++ YL+G+   LA S CSTP+  TLL +V ++ +L
Sbjct: 127 ST----NNLNTRINNTN--QNIKMYLSGVGIGLAISSCSTPIFVTLLIWVTSNHNL 176

[Close]

BLAST of Cp4.1LG14g00180 vs. ExPASy Swiss-Prot
Match: Q1XDC3 (Putative cytochrome c-type biogenesis protein DbsD-like OS=Pyropia yezoensis OX=2788 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.1e-16
Identity = 57/179 (31.84%), Postives = 92/179 (51.40%), Query Frame = 0


Query: 108 FLYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKS 167
           F+Y++    N     QL+ L+ TS + IF +G  TSLSPC +S+LP+ + YI       +
Sbjct: 6   FVYNSQHFVNNITLYQLNHLNSTSFSFIFLSGLFTSLSPCIISILPVCILYIAGETQKLN 65

Query: 168 RAEVVGNSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIE 227
                 N   F LG  ++   LGI A+   K Y Q   G+P  ++ + + MGLNLL I+ 
Sbjct: 66  PINKTKNLFLFCLGTISSFITLGILATLITKTYSQFFNGIPTISAVVIIYMGLNLLNIVH 125

Query: 228 LQLPSFFDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKSLLS 287
           +  P F           N   + + YL+G+   +A S CSTP+  TLL ++ +++ + +
Sbjct: 126 INSPKF------NGLVTNNNYNFKMYLSGVGIGIAISSCSTPIFVTLLVWINSTQKIFT 178

[Close]

BLAST of Cp4.1LG14g00180 vs. NCBI nr
Match: KAG6577393.1 (Cytochrome c-type biogenesis ccda-like chloroplastic protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 582 bits (1499), Expect = 7.16e-208
Identity = 317/352 (90.06%), Postives = 318/352 (90.34%), Query Frame = 0


Query: 1   MGFLMTHSGGFGINSIKISTSKPLLGRPPGKYVAPLKFLGGQSAAQDQTKDIDELVESTN 60
           MGFLMTHSGGFGINSIKISTSKPLLGRPPGKYVAPLK LGGQSAAQ QTKDIDELVESTN
Sbjct: 1   MGFLMTHSGGFGINSIKISTSKPLLGRPPGKYVAPLKLLGGQSAAQGQTKDIDELVESTN 60

Query: 61  SSNHFHAMAFVNAVSATSFLAVDAAKAERAASVYTLADGGIGDWIGGFLYSAGQQANVAV 120
           SSNHFHAMAFVNA+SATSFLAVDAAKAERAASVYTLADGGIGDW GGFLYSAGQQANVAV
Sbjct: 61  SSNHFHAMAFVNAISATSFLAVDAAKAERAASVYTLADGGIGDWFGGFLYSAGQQANVAV 120

Query: 121 QDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGNSVAFAL 180
           QDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGNSVAFAL
Sbjct: 121 QDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGNSVAFAL 180

Query: 181 GLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDNFDPR 240
           GLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDNFDPR
Sbjct: 181 GLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDNFDPR 240

Query: 241 SAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK------------------ 300
           SAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK                  
Sbjct: 241 SAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPIVGGSLLLTYTTGYVV 300

Query: 301 -------------SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 321
                        SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM
Sbjct: 301 PLLLAASFAGALQSLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 352

[Close]

BLAST of Cp4.1LG14g00180 vs. NCBI nr
Match: XP_023553444.1 (cytochrome c-type biogenesis ccda-like chloroplastic protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 579 bits (1493), Expect = 7.60e-207
Identity = 320/359 (89.14%), Postives = 320/359 (89.14%), Query Frame = 0


Query: 1   MGFLMTHSGGFGINSIKISTSKPLLGRPPGKYVAPLKFLGGQSAAQDQTKDIDELVESTN 60
           MGFLMTHSGGFGINSIKISTSKPLLGRPPGKYVAPLKFLGGQSAAQDQTKDIDELVESTN
Sbjct: 1   MGFLMTHSGGFGINSIKISTSKPLLGRPPGKYVAPLKFLGGQSAAQDQTKDIDELVESTN 60

Query: 61  SSNHFHAMAFVNAVSATSFLAVDAAKAER-------AASVYTLADGGIGDWIGGFLYSAG 120
           SSNHFHAMAFVNAVSATSFLAVDAAKAE        AASVYTLADGGIGDWIGGFLYSAG
Sbjct: 61  SSNHFHAMAFVNAVSATSFLAVDAAKAESLEHMWEGAASVYTLADGGIGDWIGGFLYSAG 120

Query: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVG 180
           QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVG
Sbjct: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVG 180

Query: 181 NSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF 240
           NSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF
Sbjct: 181 NSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF 240

Query: 241 FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK----------- 300
           FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK           
Sbjct: 241 FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPIVGGSLLLT 300

Query: 301 --------------------SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 321
                               SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM
Sbjct: 301 YTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 359

[Close]

BLAST of Cp4.1LG14g00180 vs. NCBI nr
Match: KAG7015470.1 (Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 570 bits (1470), Expect = 2.42e-203
Identity = 315/359 (87.74%), Postives = 316/359 (88.02%), Query Frame = 0


Query: 1   MGFLMTHSGGFGINSIKISTSKPLLGRPPGKYVAPLKFLGGQSAAQDQTKDIDELVESTN 60
           MGFLMTHSGGFGINSIKISTSKPLLGRPPGKYVAPLK LGGQSAAQ QTKDIDELVESTN
Sbjct: 1   MGFLMTHSGGFGINSIKISTSKPLLGRPPGKYVAPLKLLGGQSAAQGQTKDIDELVESTN 60

Query: 61  SSNHFHAMAFVNAVSATSFLAVDAAKAER-------AASVYTLADGGIGDWIGGFLYSAG 120
           SSNHFHAMAFVNA+SATSFLAVDAAKAE        AA VYTLADGGIGDW GGFLYSAG
Sbjct: 61  SSNHFHAMAFVNAISATSFLAVDAAKAESLQHMWEGAAPVYTLADGGIGDWFGGFLYSAG 120

Query: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVG 180
           QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVG
Sbjct: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVG 180

Query: 181 NSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF 240
           NSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF
Sbjct: 181 NSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF 240

Query: 241 FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK----------- 300
           FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK           
Sbjct: 241 FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPIVGGSLLLT 300

Query: 301 --------------------SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 321
                               SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM
Sbjct: 301 YTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 359

[Close]

BLAST of Cp4.1LG14g00180 vs. NCBI nr
Match: XP_022929535.1 (cytochrome c-type biogenesis ccda-like chloroplastic protein [Cucurbita moschata] >XP_022929536.1 cytochrome c-type biogenesis ccda-like chloroplastic protein [Cucurbita moschata])

HSP 1 Score: 569 bits (1466), Expect = 9.85e-203
Identity = 314/359 (87.47%), Postives = 315/359 (87.74%), Query Frame = 0


Query: 1   MGFLMTHSGGFGINSIKISTSKPLLGRPPGKYVAPLKFLGGQSAAQDQTKDIDELVESTN 60
           MGFLMTHSGGFGINS KISTSKPLLGRPPGKYVAPLK LGGQSAAQ QTKDIDELVESTN
Sbjct: 1   MGFLMTHSGGFGINSFKISTSKPLLGRPPGKYVAPLKLLGGQSAAQGQTKDIDELVESTN 60

Query: 61  SSNHFHAMAFVNAVSATSFLAVDAAKAER-------AASVYTLADGGIGDWIGGFLYSAG 120
           SSNHFHAMAFVNA+SATSFLAVDAAKAE        AA VYTLADGGIGDW GGFLYSAG
Sbjct: 61  SSNHFHAMAFVNAISATSFLAVDAAKAESLQHMWEGAAPVYTLADGGIGDWFGGFLYSAG 120

Query: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVG 180
           QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVG
Sbjct: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVG 180

Query: 181 NSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF 240
           NSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF
Sbjct: 181 NSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF 240

Query: 241 FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK----------- 300
           FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK           
Sbjct: 241 FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPIVGGSLLLT 300

Query: 301 --------------------SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 321
                               SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM
Sbjct: 301 YTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 359

[Close]

BLAST of Cp4.1LG14g00180 vs. NCBI nr
Match: XP_022985240.1 (cytochrome c-type biogenesis ccda-like chloroplastic protein [Cucurbita maxima])

HSP 1 Score: 568 bits (1463), Expect = 2.82e-202
Identity = 314/359 (87.47%), Postives = 315/359 (87.74%), Query Frame = 0


Query: 1   MGFLMTHSGGFGINSIKISTSKPLLGRPPGKYVAPLKFLGGQSAAQDQTKDIDELVESTN 60
           MGFLMTHSGGFGINSIKISTSK LLGRPPGKYVAPL FLGGQSAA DQTKDIDE VESTN
Sbjct: 1   MGFLMTHSGGFGINSIKISTSKRLLGRPPGKYVAPLNFLGGQSAALDQTKDIDEFVESTN 60

Query: 61  SSNHFHAMAFVNAVSATSFLAVDAAKAER-------AASVYTLADGGIGDWIGGFLYSAG 120
           SSNHFHAMAFVNA+SATSFLAVDAAKAE        AASVYTLADGGIGDW GGFLYSAG
Sbjct: 61  SSNHFHAMAFVNAISATSFLAVDAAKAESLEHMWEGAASVYTLADGGIGDWFGGFLYSAG 120

Query: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVG 180
           QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVG
Sbjct: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVG 180

Query: 181 NSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF 240
           NSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF
Sbjct: 181 NSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF 240

Query: 241 FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK----------- 300
           FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK           
Sbjct: 241 FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPIVGGSLLLT 300

Query: 301 --------------------SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 321
                               SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM
Sbjct: 301 YTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 359

[Close]

BLAST of Cp4.1LG14g00180 vs. ExPASy TrEMBL
Match: A0A6J1ENE1 (cytochrome c-type biogenesis ccda-like chloroplastic protein OS=Cucurbita moschata OX=3662 GN=LOC111436074 PE=3 SV=1)

HSP 1 Score: 569 bits (1466), Expect = 4.77e-203
Identity = 314/359 (87.47%), Postives = 315/359 (87.74%), Query Frame = 0


Query: 1   MGFLMTHSGGFGINSIKISTSKPLLGRPPGKYVAPLKFLGGQSAAQDQTKDIDELVESTN 60
           MGFLMTHSGGFGINS KISTSKPLLGRPPGKYVAPLK LGGQSAAQ QTKDIDELVESTN
Sbjct: 1   MGFLMTHSGGFGINSFKISTSKPLLGRPPGKYVAPLKLLGGQSAAQGQTKDIDELVESTN 60

Query: 61  SSNHFHAMAFVNAVSATSFLAVDAAKAER-------AASVYTLADGGIGDWIGGFLYSAG 120
           SSNHFHAMAFVNA+SATSFLAVDAAKAE        AA VYTLADGGIGDW GGFLYSAG
Sbjct: 61  SSNHFHAMAFVNAISATSFLAVDAAKAESLQHMWEGAAPVYTLADGGIGDWFGGFLYSAG 120

Query: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVG 180
           QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVG
Sbjct: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVG 180

Query: 181 NSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF 240
           NSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF
Sbjct: 181 NSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF 240

Query: 241 FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK----------- 300
           FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK           
Sbjct: 241 FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPIVGGSLLLT 300

Query: 301 --------------------SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 321
                               SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM
Sbjct: 301 YTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 359

[Close]

BLAST of Cp4.1LG14g00180 vs. ExPASy TrEMBL
Match: A0A6J1JAT1 (cytochrome c-type biogenesis ccda-like chloroplastic protein OS=Cucurbita maxima OX=3661 GN=LOC111483292 PE=3 SV=1)

HSP 1 Score: 568 bits (1463), Expect = 1.37e-202
Identity = 314/359 (87.47%), Postives = 315/359 (87.74%), Query Frame = 0


Query: 1   MGFLMTHSGGFGINSIKISTSKPLLGRPPGKYVAPLKFLGGQSAAQDQTKDIDELVESTN 60
           MGFLMTHSGGFGINSIKISTSK LLGRPPGKYVAPL FLGGQSAA DQTKDIDE VESTN
Sbjct: 1   MGFLMTHSGGFGINSIKISTSKRLLGRPPGKYVAPLNFLGGQSAALDQTKDIDEFVESTN 60

Query: 61  SSNHFHAMAFVNAVSATSFLAVDAAKAER-------AASVYTLADGGIGDWIGGFLYSAG 120
           SSNHFHAMAFVNA+SATSFLAVDAAKAE        AASVYTLADGGIGDW GGFLYSAG
Sbjct: 61  SSNHFHAMAFVNAISATSFLAVDAAKAESLEHMWEGAASVYTLADGGIGDWFGGFLYSAG 120

Query: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVG 180
           QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVG
Sbjct: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVG 180

Query: 181 NSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF 240
           NSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF
Sbjct: 181 NSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF 240

Query: 241 FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK----------- 300
           FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK           
Sbjct: 241 FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPIVGGSLLLT 300

Query: 301 --------------------SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 321
                               SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM
Sbjct: 301 YTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 359

[Close]

BLAST of Cp4.1LG14g00180 vs. ExPASy TrEMBL
Match: A0A5D3BU70 (Cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00980 PE=3 SV=1)

HSP 1 Score: 505 bits (1301), Expect = 6.32e-178
Identity = 289/360 (80.28%), Postives = 300/360 (83.33%), Query Frame = 0


Query: 1   MGFLMTHSGGFGINSIKISTSKPLLG-RPPGKYVAPLKFLGGQSAAQDQTKDIDELVEST 60
           M  LM++SGGF INSIKISTSK L     PGKYV P+KFLG QSAA DQ KDI ELVE+ 
Sbjct: 1   MSILMSNSGGFIINSIKISTSKRLPHPNTPGKYVMPIKFLGRQSAADDQCKDI-ELVENR 60

Query: 61  NSSNHFHAMAFVNAVSATSFLAVDAAKAER-------AASVYTLADGGIGDWIGGFLYSA 120
           NS N+F AMAFVNA+SATSFLAVDAAKAE        AASVYTLADGG+GDW GG LYSA
Sbjct: 61  NSRNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGMGDWFGGILYSA 120

Query: 121 GQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVV 180
           GQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKS+AEVV
Sbjct: 121 GQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVV 180

Query: 181 GNSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPS 240
           GNSVAF+LGLATTLALLGI ASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPS
Sbjct: 181 GNSVAFSLGLATTLALLGIGASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPS 240

Query: 241 FFDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK---------- 300
           FF+NFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK          
Sbjct: 241 FFNNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLL 300

Query: 301 ---------------------SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 321
                                SLLSFRKFSSWINPISGALLL GGVY+FLDRLFPVTMAM
Sbjct: 301 TYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGGVYTFLDRLFPVTMAM 359

[Close]

BLAST of Cp4.1LG14g00180 vs. ExPASy TrEMBL
Match: A0A1S3BSW3 (cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493358 PE=3 SV=1)

HSP 1 Score: 504 bits (1297), Expect = 2.57e-177
Identity = 288/360 (80.00%), Postives = 300/360 (83.33%), Query Frame = 0


Query: 1   MGFLMTHSGGFGINSIKISTSKPLLG-RPPGKYVAPLKFLGGQSAAQDQTKDIDELVEST 60
           M  LM++SGGF INSIKISTSK L     PGKYV P+KFLG QSAA DQ +DI ELVE+ 
Sbjct: 1   MSILMSNSGGFIINSIKISTSKRLPHPNTPGKYVMPIKFLGRQSAADDQCEDI-ELVENR 60

Query: 61  NSSNHFHAMAFVNAVSATSFLAVDAAKAER-------AASVYTLADGGIGDWIGGFLYSA 120
           NS N+F AMAFVNA+SATSFLAVDAAKAE        AASVYTLADGG+GDW GG LYSA
Sbjct: 61  NSRNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGMGDWFGGILYSA 120

Query: 121 GQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVV 180
           GQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKS+AEVV
Sbjct: 121 GQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVV 180

Query: 181 GNSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPS 240
           GNSVAF+LGLATTLALLGI ASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPS
Sbjct: 181 GNSVAFSLGLATTLALLGIGASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPS 240

Query: 241 FFDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK---------- 300
           FF+NFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK          
Sbjct: 241 FFNNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLL 300

Query: 301 ---------------------SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 321
                                SLLSFRKFSSWINPISGALLL GGVY+FLDRLFPVTMAM
Sbjct: 301 TYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGGVYTFLDRLFPVTMAM 359

[Close]

BLAST of Cp4.1LG14g00180 vs. ExPASy TrEMBL
Match: A0A6J1CP79 (cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012907 PE=3 SV=1)

HSP 1 Score: 501 bits (1289), Expect = 4.08e-176
Identity = 280/359 (77.99%), Postives = 299/359 (83.29%), Query Frame = 0


Query: 1   MGFLMTHSGGFGINSIKISTSKPLLGRPPGKYVAPLKFLGGQSAAQDQTKDIDELVESTN 60
           M  +M+HSGG GINSI IS+SK L  +  GK V P+K LG QSAA+D++KDI ELVE+ N
Sbjct: 1   MSLVMSHSGGLGINSIIISSSKRLYSKTRGKNVMPMKLLGRQSAAEDRSKDI-ELVENKN 60

Query: 61  SSNHFHAMAFVNAVSATSFLAVDAAKAER-------AASVYTLADGGIGDWIGGFLYSAG 120
           SS HF AMAFVN +SAT+FL V+AAKAE        AASVYTLADGGIGDW G FLYSAG
Sbjct: 61  SSRHFQAMAFVNVISATNFLVVEAAKAETLKDMWEGAASVYTLADGGIGDWFGSFLYSAG 120

Query: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVG 180
           QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKS+AEVVG
Sbjct: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVG 180

Query: 181 NSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF 240
           NS+AF+LGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIEL+LPSF
Sbjct: 181 NSLAFSLGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELRLPSF 240

Query: 241 FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK----------- 300
           FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLAT+LGYVATSK           
Sbjct: 241 FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATILGYVATSKDPIVGGSLLLT 300

Query: 301 --------------------SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 321
                               SLLSFRKFSSWINP+SGALLLGGGVY+FLDRLFPVTMAM
Sbjct: 301 YTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPVSGALLLGGGVYTFLDRLFPVTMAM 358

[Close]

BLAST of Cp4.1LG14g00180 vs. TAIR 10
Match: AT5G54290.1 (cytochrome c biogenesis protein family )

HSP 1 Score: 360.1 bits (923), Expect = 1.8e-99
Identity = 205/288 (71.18%), Postives = 227/288 (78.82%), Query Frame = 0


Query: 68  MAFVNAVSATSFLAVDAAK--AERAASVYTLADGGIGDWIGGFLYSAGQQANVAVQDQLS 127
           +   N V+ +S  A D      ++A S+Y LA+G +GD +G FLYSA QQAN AVQDQLS
Sbjct: 67  LGVANLVTLSSAKAADLKMIVLDQATSIYILAEGSLGDSVGNFLYSANQQANEAVQDQLS 126

Query: 128 ALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGNSVAFALGLATT 187
           ALS TSLAVIFGAG VTSLSPCTLSVLPLTLGYIGAFGSGKSR +V+G++VAFALGLATT
Sbjct: 127 ALSVTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRGQVIGDTVAFALGLATT 186

Query: 188 LALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDNFDPRSAAAN 247
           LALLGI ASFAGKAYGQIGQGLP+AASGLA++MGLNLLEIIELQLPSFF+NFDPR+AAAN
Sbjct: 187 LALLGIVASFAGKAYGQIGQGLPVAASGLAIVMGLNLLEIIELQLPSFFNNFDPRAAAAN 246

Query: 248 FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK----------------------- 307
           FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS+                       
Sbjct: 247 FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPVIGGSLLLTYTTGYVAPLIVA 306

Query: 308 --------SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFP-VTMAM 322
                   SLLS RK S+WINPISGALLLGGG+Y+FLDRLFP  TM M
Sbjct: 307 ASFAGALQSLLSLRKVSAWINPISGALLLGGGLYTFLDRLFPAATMVM 354

[Close]

BLAST of Cp4.1LG14g00180 vs. TAIR 10
Match: AT5G54290.2 (cytochrome c biogenesis protein family )

HSP 1 Score: 360.1 bits (923), Expect = 1.8e-99
Identity = 205/288 (71.18%), Postives = 227/288 (78.82%), Query Frame = 0


Query: 68  MAFVNAVSATSFLAVDAAK--AERAASVYTLADGGIGDWIGGFLYSAGQQANVAVQDQLS 127
           +   N V+ +S  A D      ++A S+Y LA+G +GD +G FLYSA QQAN AVQDQLS
Sbjct: 68  LGVANLVTLSSAKAADLKMIVLDQATSIYILAEGSLGDSVGNFLYSANQQANEAVQDQLS 127

Query: 128 ALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGNSVAFALGLATT 187
           ALS TSLAVIFGAG VTSLSPCTLSVLPLTLGYIGAFGSGKSR +V+G++VAFALGLATT
Sbjct: 128 ALSVTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRGQVIGDTVAFALGLATT 187

Query: 188 LALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDNFDPRSAAAN 247
           LALLGI ASFAGKAYGQIGQGLP+AASGLA++MGLNLLEIIELQLPSFF+NFDPR+AAAN
Sbjct: 188 LALLGIVASFAGKAYGQIGQGLPVAASGLAIVMGLNLLEIIELQLPSFFNNFDPRAAAAN 247

Query: 248 FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK----------------------- 307
           FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS+                       
Sbjct: 248 FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPVIGGSLLLTYTTGYVAPLIVA 307

Query: 308 --------SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFP-VTMAM 322
                   SLLS RK S+WINPISGALLLGGG+Y+FLDRLFP  TM M
Sbjct: 308 ASFAGALQSLLSLRKVSAWINPISGALLLGGGLYTFLDRLFPAATMVM 355

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g00180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M5P3	2.5e-98	71.18	Cytochrome c-type biogenesis ccda-like chloroplastic protein OS=Arabidopsis thal...	[more]
Q2QY07	2.1e-97	71.63	Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 OS=Oryza sativa s...	[more]
Q2RAR6	2.8e-97	71.28	Cytochrome c-type biogenesis ccda-like chloroplastic protein 1 OS=Oryza sativa s...	[more]
P51364	1.4e-16	31.82	Putative cytochrome c-type biogenesis protein DbsD-like OS=Porphyra purpurea OX=...	[more]
Q1XDC3	4.1e-16	31.84	Putative cytochrome c-type biogenesis protein DbsD-like OS=Pyropia yezoensis OX=...	[more]

BLAST of Cp4.1LG14g00180 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577393.1	7.16e-208	90.06	Cytochrome c-type biogenesis ccda-like chloroplastic protein 2, partial [Cucurbi...	[more]
XP_023553444.1	7.60e-207	89.14	cytochrome c-type biogenesis ccda-like chloroplastic protein [Cucurbita pepo sub...	[more]
KAG7015470.1	2.42e-203	87.74	Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 [Cucurbita argyro...	[more]
XP_022929535.1	9.85e-203	87.47	cytochrome c-type biogenesis ccda-like chloroplastic protein [Cucurbita moschata...	[more]
XP_022985240.1	2.82e-202	87.47	cytochrome c-type biogenesis ccda-like chloroplastic protein [Cucurbita maxima]	[more]

BLAST of Cp4.1LG14g00180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ENE1	4.77e-203	87.47	cytochrome c-type biogenesis ccda-like chloroplastic protein OS=Cucurbita moscha...	[more]
A0A6J1JAT1	1.37e-202	87.47	cytochrome c-type biogenesis ccda-like chloroplastic protein OS=Cucurbita maxima...	[more]
A0A5D3BU70	6.32e-178	80.28	Cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 OS=Cucum...	[more]
A0A1S3BSW3	2.57e-177	80.00	cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 OS=Cucum...	[more]
A0A6J1CP79	4.08e-176	77.99	cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 OS=Momor...	[more]

BLAST of Cp4.1LG14g00180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54290.1	1.8e-99	71.18	cytochrome c biogenesis protein family	[more]
AT5G54290.2	1.8e-99	71.18	cytochrome c biogenesis protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003834	Cytochrome C biogenesis protein, transmembrane domain	PFAM	PF02683	DsbD	coord: 135..284 e-value: 3.0E-32 score: 112.3
None	No IPR available	PANTHER	PTHR31272:SF6	CYTOCHROME C-TYPE BIOGENESIS CCDA-LIKE CHLOROPLASTIC PROTEIN	coord: 62..282
None	No IPR available	PANTHER	PTHR31272	CYTOCHROME C-TYPE BIOGENESIS PROTEIN HI_1454-RELATED	coord: 62..282
None	No IPR available	PANTHER	PTHR31272:SF6	CYTOCHROME C-TYPE BIOGENESIS CCDA-LIKE CHLOROPLASTIC PROTEIN	coord: 281..321
None	No IPR available	PANTHER	PTHR31272	CYTOCHROME C-TYPE BIOGENESIS PROTEIN HI_1454-RELATED	coord: 281..321

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g00180.1	Cp4.1LG14g00180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0017004	cytochrome complex assembly
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane