Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCCGACTCCAATTCGCCATGGAAGTGGAACACAGCAATCACGAACAACTTCCACACCAAGGCTGACCACCACCATTTCTCTCTCCCCAACATTTTCGACGCCAATCGCCGGAACGCAAAGCAACCGCCACCCCTAGTCTTGGACGCCGGCGGAGGAGCTGGAGTTGGCTGCGGCGTCGGGCTCGGCTTTGGTCTTGTCGGCGGGATTGGCCATGGCGGCGCCTCTCCCTGGAATCACCTTCACCTCGTTTTCGGCCTCGGTCTCGGCTGTGGCGTTGGCCTAGGGCTTGGAATTGGCAAAGGGATTGGCTATGGCATCTCCTTCGACTCTCTCGATTCTTATTTCTCTGATCACAAACCGAACCCTAGACAGAAGCCTCCTCTGATTCAGATTTGA
mRNA sequence
ATGAAATCCGACTCCAATTCGCCATGGAAGTGGAACACAGCAATCACGAACAACTTCCACACCAAGGCTGACCACCACCATTTCTCTCTCCCCAACATTTTCGACGCCAATCGCCGGAACGCAAAGCAACCGCCACCCCTAGTCTTGGACGCCGGCGGAGGAGCTGGAGTTGGCTGCGGCGTCGGGCTCGGCTTTGGTCTTGTCGGCGGGATTGGCCATGGCGGCGCCTCTCCCTGGAATCACCTTCACCTCGTTTTCGGCCTCGGTCTCGGCTGTGGCGTTGGCCTAGGGCTTGGAATTGGCAAAGGGATTGGCTATGGCATCTCCTTCGACTCTCTCGATTCTTATTTCTCTGATCACAAACCGAACCCTAGACAGAAGCCTCCTCTGATTCAGATTTGA
Coding sequence (CDS)
ATGAAATCCGACTCCAATTCGCCATGGAAGTGGAACACAGCAATCACGAACAACTTCCACACCAAGGCTGACCACCACCATTTCTCTCTCCCCAACATTTTCGACGCCAATCGCCGGAACGCAAAGCAACCGCCACCCCTAGTCTTGGACGCCGGCGGAGGAGCTGGAGTTGGCTGCGGCGTCGGGCTCGGCTTTGGTCTTGTCGGCGGGATTGGCCATGGCGGCGCCTCTCCCTGGAATCACCTTCACCTCGTTTTCGGCCTCGGTCTCGGCTGTGGCGTTGGCCTAGGGCTTGGAATTGGCAAAGGGATTGGCTATGGCATCTCCTTCGACTCTCTCGATTCTTATTTCTCTGATCACAAACCGAACCCTAGACAGAAGCCTCCTCTGATTCAGATTTGA
Protein sequence
MKSDSNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGCGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFSDHKPNPRQKPPLIQI
Homology
BLAST of Cp4.1LG13g11360 vs. NCBI nr
Match:
KAG6578355.1 (hypothetical protein SDJN03_22803, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 277 bits (708), Expect = 5.10e-94
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query: 1 MKSDSNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGCG 60
MKSDSNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGCG
Sbjct: 1 MKSDSNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGCG 60
Query: 61 VGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFSDH 120
VGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFSDH
Sbjct: 61 VGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFSDH 120
Query: 121 KPNPRQKPPLIQI 133
KPNPRQKPPLIQI
Sbjct: 121 KPNPRQKPPLIQI 133
BLAST of Cp4.1LG13g11360 vs. NCBI nr
Match:
KGN63146.1 (hypothetical protein Csa_022245 [Cucumis sativus])
HSP 1 Score: 156 bits (394), Expect = 2.35e-46
Identity = 89/135 (65.93%), Postives = 98/135 (72.59%), Query Frame = 0
Query: 1 MKSDS-NSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGC 60
MKSDS NSPW NNF T FD +RRN K+ P LVL+AGGGAGVGC
Sbjct: 1 MKSDSSNSPW-------NNFPTIF---------CFDQDRRNTKELPALVLEAGGGAGVGC 60
Query: 61 GVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFSD 120
G+G+GFGLVGGIGH GASPWNHLHLVFGLG GCGVGLGLGIG+G GYG+SF S+DSYFS
Sbjct: 61 GLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYFSH 119
Query: 121 HKPNPRQKPP-LIQI 133
NP+ K P LIQ
Sbjct: 121 LISNPKPKQPSLIQF 119
BLAST of Cp4.1LG13g11360 vs. NCBI nr
Match:
KAA0051071.1 (fibroin heavy chain [Cucumis melo var. makuwa] >TYK02741.1 fibroin heavy chain [Cucumis melo var. makuwa])
HSP 1 Score: 155 bits (393), Expect = 3.67e-46
Identity = 92/137 (67.15%), Postives = 101/137 (73.72%), Query Frame = 0
Query: 1 MKSDSNS-PWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPL--VLDAGGGAGV 60
MKSDS+S PW NNFHT FS FD +RRN K+ P L VL+AGGGAGV
Sbjct: 1 MKSDSSSSPW-------NNFHTTI----FS----FDHDRRNTKELPALALVLEAGGGAGV 60
Query: 61 GCGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYF 120
GCG+G GFGLVGGIGHGGASPWNHLHLVFGLG GCGVGLGLGIG+G GYG SF+SLDSYF
Sbjct: 61 GCGLGFGFGLVGGIGHGGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGFSFESLDSYF 120
Query: 121 SDHKPNPRQKPP-LIQI 133
S +P+ K P LIQ
Sbjct: 121 SHLNSDPKHKQPSLIQF 122
BLAST of Cp4.1LG13g11360 vs. NCBI nr
Match:
KAE8022053.1 (hypothetical protein FH972_007887 [Carpinus fangiana])
HSP 1 Score: 118 bits (296), Expect = 2.72e-31
Identity = 66/131 (50.38%), Postives = 87/131 (66.41%), Query Frame = 0
Query: 1 MKSDSNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGCG 60
+K+DS+S WKWN ++N K + F + F R A++ +VL G G G+GCG
Sbjct: 8 IKADSDSIWKWNGNLSNK--KKNEKKQFPVAKFFQNGREAAEE---VVLGPGVGVGIGCG 67
Query: 61 VGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFSDH 120
VG+GFGLVGGIG+GG PWNHL +VFG G+GCGVGLG G G+GIGYG S +SL+SY S
Sbjct: 68 VGMGFGLVGGIGYGG-WPWNHLQVVFGAGIGCGVGLGFGYGQGIGYGFSLESLESYTSKR 127
Query: 121 KPNPRQKPPLI 131
+ +K L+
Sbjct: 128 SSDSNKKKILM 132
BLAST of Cp4.1LG13g11360 vs. NCBI nr
Match:
XP_030955948.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic [Quercus lobata])
HSP 1 Score: 116 bits (291), Expect = 1.85e-30
Identity = 66/135 (48.89%), Postives = 89/135 (65.93%), Query Frame = 0
Query: 1 MKSDSNSPWK-WNTAITNNF-HTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVG 60
+K+DS+S W WN +N + K HF + N + A++ +VL GGG G+G
Sbjct: 8 IKTDSDSFWNIWNENSSNKKKNEKKKKKHFPVSKFLHNNPKKAEE---IVLGPGGGVGIG 67
Query: 61 CGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFS 120
CGVGLGFGLVGG+G+GG PWNHL LV G+G+GCGVG+G G G+GIGYG S +SL+SY S
Sbjct: 68 CGVGLGFGLVGGVGYGG-WPWNHLQLVIGIGIGCGVGVGFGYGQGIGYGFSLESLESYLS 127
Query: 121 DHKPNPRQKPPLIQI 133
+ +K +I+I
Sbjct: 128 KQSSSDSKKRVVIEI 138
BLAST of Cp4.1LG13g11360 vs. ExPASy TrEMBL
Match:
A0A0A0LSZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G404970 PE=4 SV=1)
HSP 1 Score: 156 bits (394), Expect = 1.14e-46
Identity = 89/135 (65.93%), Postives = 98/135 (72.59%), Query Frame = 0
Query: 1 MKSDS-NSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGC 60
MKSDS NSPW NNF T FD +RRN K+ P LVL+AGGGAGVGC
Sbjct: 1 MKSDSSNSPW-------NNFPTIF---------CFDQDRRNTKELPALVLEAGGGAGVGC 60
Query: 61 GVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFSD 120
G+G+GFGLVGGIGH GASPWNHLHLVFGLG GCGVGLGLGIG+G GYG+SF S+DSYFS
Sbjct: 61 GLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYFSH 119
Query: 121 HKPNPRQKPP-LIQI 133
NP+ K P LIQ
Sbjct: 121 LISNPKPKQPSLIQF 119
BLAST of Cp4.1LG13g11360 vs. ExPASy TrEMBL
Match:
A0A5A7UC28 (Fibroin heavy chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154G00440 PE=4 SV=1)
HSP 1 Score: 155 bits (393), Expect = 1.78e-46
Identity = 92/137 (67.15%), Postives = 101/137 (73.72%), Query Frame = 0
Query: 1 MKSDSNS-PWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPL--VLDAGGGAGV 60
MKSDS+S PW NNFHT FS FD +RRN K+ P L VL+AGGGAGV
Sbjct: 1 MKSDSSSSPW-------NNFHTTI----FS----FDHDRRNTKELPALALVLEAGGGAGV 60
Query: 61 GCGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYF 120
GCG+G GFGLVGGIGHGGASPWNHLHLVFGLG GCGVGLGLGIG+G GYG SF+SLDSYF
Sbjct: 61 GCGLGFGFGLVGGIGHGGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGFSFESLDSYF 120
Query: 121 SDHKPNPRQKPP-LIQI 133
S +P+ K P LIQ
Sbjct: 121 SHLNSDPKHKQPSLIQF 122
BLAST of Cp4.1LG13g11360 vs. ExPASy TrEMBL
Match:
A0A5N6QWW9 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007887 PE=4 SV=1)
HSP 1 Score: 118 bits (296), Expect = 1.32e-31
Identity = 66/131 (50.38%), Postives = 87/131 (66.41%), Query Frame = 0
Query: 1 MKSDSNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGCG 60
+K+DS+S WKWN ++N K + F + F R A++ +VL G G G+GCG
Sbjct: 8 IKADSDSIWKWNGNLSNK--KKNEKKQFPVAKFFQNGREAAEE---VVLGPGVGVGIGCG 67
Query: 61 VGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFSDH 120
VG+GFGLVGGIG+GG PWNHL +VFG G+GCGVGLG G G+GIGYG S +SL+SY S
Sbjct: 68 VGMGFGLVGGIGYGG-WPWNHLQVVFGAGIGCGVGLGFGYGQGIGYGFSLESLESYTSKR 127
Query: 121 KPNPRQKPPLI 131
+ +K L+
Sbjct: 128 SSDSNKKKILM 132
BLAST of Cp4.1LG13g11360 vs. ExPASy TrEMBL
Match:
A0A2N9FV55 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19064 PE=4 SV=1)
HSP 1 Score: 117 bits (293), Expect = 4.09e-31
Identity = 68/134 (50.75%), Postives = 88/134 (65.67%), Query Frame = 0
Query: 1 MKSDSNSPWK-WNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGC 60
+K+DSNS W WN +N K + F + NR A++ +VL GGG G+GC
Sbjct: 8 IKADSNSFWNIWNGNNSNK--KKNEKKQFPVSKFLHNNRMKAEE---IVLGPGGGVGIGC 67
Query: 61 GVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFSD 120
GVG+GFGLVGGIG+GG PWNHL LVFG+G+GCGVG+G G G+GIG G S DSL+SY S
Sbjct: 68 GVGMGFGLVGGIGYGG-WPWNHLQLVFGVGMGCGVGVGFGYGQGIGNGFSLDSLESYLSK 127
Query: 121 HKPNPRQKPPLIQI 133
+ +K +I+I
Sbjct: 128 QSSSDSKKRVVIEI 135
BLAST of Cp4.1LG13g11360 vs. ExPASy TrEMBL
Match:
A0A7N2KWH8 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)
HSP 1 Score: 116 bits (291), Expect = 8.97e-31
Identity = 66/135 (48.89%), Postives = 89/135 (65.93%), Query Frame = 0
Query: 1 MKSDSNSPWK-WNTAITNNF-HTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVG 60
+K+DS+S W WN +N + K HF + N + A++ +VL GGG G+G
Sbjct: 8 IKTDSDSFWNIWNENSSNKKKNEKKKKKHFPVSKFLHNNPKKAEE---IVLGPGGGVGIG 67
Query: 61 CGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFS 120
CGVGLGFGLVGG+G+GG PWNHL LV G+G+GCGVG+G G G+GIGYG S +SL+SY S
Sbjct: 68 CGVGLGFGLVGGVGYGG-WPWNHLQLVIGIGIGCGVGVGFGYGQGIGYGFSLESLESYLS 127
Query: 121 DHKPNPRQKPPLIQI 133
+ +K +I+I
Sbjct: 128 KQSSSDSKKRVVIEI 138
BLAST of Cp4.1LG13g11360 vs. TAIR 10
Match:
AT1G66820.1 (glycine-rich protein )
HSP 1 Score: 66.2 bits (160), Expect = 2.2e-11
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 0
Query: 52 GGGAGVGCGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFD 111
G G G+GCG G+G GL GG+G G + +H ++V G G+GCG+G G G G G+G G SFD
Sbjct: 42 GIGGGIGCGAGIGIGLSGGLGIGASEGLDHSNVVLGFGIGCGIGFGFGYGFGVGGGYSFD 101
Query: 112 SLDSYF 118
+ F
Sbjct: 102 DIKERF 107
BLAST of Cp4.1LG13g11360 vs. TAIR 10
Match:
AT4G10330.1 (glycine-rich protein )
HSP 1 Score: 63.5 bits (153), Expect = 1.4e-10
Identity = 36/78 (46.15%), Postives = 47/78 (60.26%), Query Frame = 0
Query: 54 GAGVGCGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSL 113
G GVGCG G G GL+GG+G G P L FGLG G G G+G+G G G+G G ++D
Sbjct: 34 GLGVGCGFGFGAGLIGGVGFGPGVP----GLQFGLGFGAGCGIGVGFGYGVGRGAAYDHS 93
Query: 114 DSYFSDHKPNPRQKPPLI 132
SY++ KP+ + LI
Sbjct: 94 RSYYNVGKPSLNEVDSLI 107
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6578355.1 | 5.10e-94 | 100.00 | hypothetical protein SDJN03_22803, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KGN63146.1 | 2.35e-46 | 65.93 | hypothetical protein Csa_022245 [Cucumis sativus] | [more] |
| KAA0051071.1 | 3.67e-46 | 67.15 | fibroin heavy chain [Cucumis melo var. makuwa] >TYK02741.1 fibroin heavy chain [... | [more] |
| KAE8022053.1 | 2.72e-31 | 50.38 | hypothetical protein FH972_007887 [Carpinus fangiana] | [more] |
| XP_030955948.1 | 1.85e-30 | 48.89 | protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic [Quercus lobata] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LSZ2 | 1.14e-46 | 65.93 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G404970 PE=4 SV=1 | [more] |
| A0A5A7UC28 | 1.78e-46 | 67.15 | Fibroin heavy chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154... | [more] |
| A0A5N6QWW9 | 1.32e-31 | 50.38 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007887 PE=4 SV=1 | [more] |
| A0A2N9FV55 | 4.09e-31 | 50.75 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19064 PE=4 SV=1 | [more] |
| A0A7N2KWH8 | 8.97e-31 | 48.89 | Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1 | [more] |
