Cp4.1LG13g10900 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g10900
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	MRN complex-interacting protein isoform X2
Location	Cp4.1LG13: 6557716 .. 6558662 (+)
RNA-Seq Expression	Cp4.1LG13g10900
Synteny	Cp4.1LG13g10900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCACGAGAGGGATACGTATGGCCCAAATTCCCCAAAAGAAATGGCGCCAAAATTTCCAATCGGAACTGAGAACGATCGCTCGCTCCAGATTGAAACTCAAAACAAAGAAAGATTAGAGAATCGAAGAAGCGTACCGTGAAGCAGGAATGTCGACGATCTTCATCGCCGTCCAGTGTTTTCAATGCTCCACGATGCAGGCACGGATCTCGTTCCTTCTCCCTCTCTGTTTCTTCTTTGTCCTTCAATGTCTCTCTCTGTAACTTCTGTAATGGCTGTGGTTTCGATTTAGGTGAAGCAGCAGCGAAGGAGCGGGAATAAGTGGATCTGTGCAGTATGCAACGAGAAGCAATCGGTGCAGAAGGTGTTTGCTCGAGCTCCGATGGCTAAAGACGTCCGTAAGTTCGTACAGAGCTTCAATATGTCTCGGAAATATGCGGATGAACAGACGAAAGTCGATGAGATACTTGATGAGGAAATTGTTGACGAGGATCAGCTTGATTTCAACGCGAAGAGAAAAAGACGTAGCGATTGGAGTGAGTACCTCGATCTCGAGGAAGATCGCAGCCAGACTGGAAGAGAAAACGAACGAGAATTAGGTCATTGAATTTCGAATGCATTTTTAGAGTAGTTTATTGAAAAATTCCGAAGTAAAATCTTCGACAGATGATTCTTTTTCCTAAAGCAGGTAGTGATTTTACTGACGGAAAGATTGTGACGGAGCTTCCAGAAGAAAAAACCAGGAAGCACTGTTCAACGAGCTGTTCAAGCAGGCCGGAAGGTGGAGAAGGAAAAAGATTTTACAGACCAGTTTTCCCGAAGAGGACACACATTGCCAAGAATTCAGCCATTCAAGCATCAAAATGGCGTAAAGGCGTCCGAGAAGATGATGAAAAAGTTTCGTTGAAAGCCAATCTAAGCTCCAAAGGTAAAACTCTGATATGA

mRNA sequence

ATGGGCCACGAGAGGGATACGAATGTCGACGATCTTCATCGCCGTCCAGTGTTTTCAATGCTCCACGATGCAGGCACGGATCTCGTGAAGCAGCAGCGAAGGAGCGGGAATAAGTGGATCTGTGCAGTATGCAACGAGAAGCAATCGGTGCAGAAGGTGTTTGCTCGAGCTCCGATGGCTAAAGACGTCCGTAAGTTCGTACAGAGCTTCAATATGTCTCGGAAATATGCGGATGAACAGACGAAAGTCGATGAGATACTTGATGAGGAAATTGTTGACGAGGATCAGCTTGATTTCAACGCGAAGAGAAAAAGACGTAGCGATTGGAGTGAGTACCTCGATCTCGAGGAAGATCGCAGCCAGACTGGAAGAGAAAACGAACGAGAATTAGGTAGTGATTTTACTGACGGAAAGATTGTGACGGAGCTTCCAGAAGAAAAAACCAGGAAGCACTGTTCAACGAGCTGTTCAAGCAGGCCGGAAGGTGGAGAAGGAAAAAGATTTTACAGACCAGTTTTCCCGAAGAGGACACACATTGCCAAGAATTCAGCCATTCAAGCATCAAAATGGCGTAAAGGCGTCCGAGAAGATGATGAAAAAGTTTCGTTGAAAGCCAATCTAAGCTCCAAAGGTAAAACTCTGATATGA

Coding sequence (CDS)

ATGGGCCACGAGAGGGATACGAATGTCGACGATCTTCATCGCCGTCCAGTGTTTTCAATGCTCCACGATGCAGGCACGGATCTCGTGAAGCAGCAGCGAAGGAGCGGGAATAAGTGGATCTGTGCAGTATGCAACGAGAAGCAATCGGTGCAGAAGGTGTTTGCTCGAGCTCCGATGGCTAAAGACGTCCGTAAGTTCGTACAGAGCTTCAATATGTCTCGGAAATATGCGGATGAACAGACGAAAGTCGATGAGATACTTGATGAGGAAATTGTTGACGAGGATCAGCTTGATTTCAACGCGAAGAGAAAAAGACGTAGCGATTGGAGTGAGTACCTCGATCTCGAGGAAGATCGCAGCCAGACTGGAAGAGAAAACGAACGAGAATTAGGTAGTGATTTTACTGACGGAAAGATTGTGACGGAGCTTCCAGAAGAAAAAACCAGGAAGCACTGTTCAACGAGCTGTTCAAGCAGGCCGGAAGGTGGAGAAGGAAAAAGATTTTACAGACCAGTTTTCCCGAAGAGGACACACATTGCCAAGAATTCAGCCATTCAAGCATCAAAATGGCGTAAAGGCGTCCGAGAAGATGATGAAAAAGTTTCGTTGAAAGCCAATCTAAGCTCCAAAGGTAAAACTCTGATATGA

Protein sequence

MGHERDTNVDDLHRRPVFSMLHDAGTDLVKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILDEEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFTDGKIVTELPEEKTRKHCSTSCSSRPEGGEGKRFYRPVFPKRTHIAKNSAIQASKWRKGVREDDEKVSLKANLSSKGKTLI

Homology

[Close]

BLAST of Cp4.1LG13g10900 vs. ExPASy Swiss-Prot
Match: Q32PP1 (MRN complex-interacting protein OS=Danio rerio OX=7955 GN=mrnip PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 4.1e-04
Identity = 63/209 (30.14%), Postives = 90/209 (43.06%), Query Frame = 0


Query: 31  QQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEIL--- 90
           QQ +   KW C VC EKQS+ K F R   A D R+ VQ  N  R     Q    ++L   
Sbjct: 19  QQVKKAKKWTCKVCGEKQSLIKEFGRG-AAADCRRHVQKLNALRG-EQHQLNTQQLLAQG 78

Query: 91  DEEIVDED---QLDFNAKRKRR--SDWSEYLDLEEDRSQTGRENERELGSDFTDGKIVTE 150
           DEE  +ED    LD  ++++    S WS+Y D   +     +++E E      D  + TE
Sbjct: 79  DEENENEDVYEVLDPKSEQEEAHVSRWSKYTDQTTEGPNEEKDDEDE------DENVYTE 138

Query: 151 LPE---EKTRKHCSTS--------CSSRPEGGEG-----KRFYRPV-FPKRTHIAKNSAI 210
            P+   + TRK    S        C +  E   G     K+ Y P+   KR+  + N   
Sbjct: 139 RPQFRIQGTRKRKKMSSLEPFGGNCDNYEESRAGYSQFRKQAYLPLQLEKRSSSSWNKG- 198

Query: 211 QASKWRKGVREDDEKVSLKANLSSKGKTL 215
             SK+    R DD   S +  L S  +T+
Sbjct: 199 SVSKYSNCQRPDDVVPSARTKLPSSRQTV 218

[Close]

BLAST of Cp4.1LG13g10900 vs. NCBI nr
Match: XP_023549688.1 (MRN complex-interacting protein isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 361 bits (926), Expect = 9.90e-124
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 29  VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILD 88
           VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILD
Sbjct: 18  VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILD 77

Query: 89  EEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFTDGKIVTELPEEKT 148
           EEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFTDGKIVTELPEEKT
Sbjct: 78  EEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFTDGKIVTELPEEKT 137

Query: 149 RKHCSTSCSSRPEGGEGKRFYRPVFPKRTHIAKNSAIQASKWRKGVREDDEKVSLKANLS 208
           RKHCSTSCSSRPEGGEGKRFYRPVFPKRTHIAKNSAIQASKWRKGVREDDEKVSLKANLS
Sbjct: 138 RKHCSTSCSSRPEGGEGKRFYRPVFPKRTHIAKNSAIQASKWRKGVREDDEKVSLKANLS 197

Query: 209 SK 210
           SK
Sbjct: 198 SK 199

[Close]

BLAST of Cp4.1LG13g10900 vs. NCBI nr
Match: XP_023549686.1 (MRN complex-interacting protein isoform X2 [Cucurbita pepo subsp. pepo] >XP_023549687.1 MRN complex-interacting protein isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 361 bits (926), Expect = 1.31e-123
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 29  VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILD 88
           VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILD
Sbjct: 18  VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILD 77

Query: 89  EEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFTDGKIVTELPEEKT 148
           EEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFTDGKIVTELPEEKT
Sbjct: 78  EEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFTDGKIVTELPEEKT 137

Query: 149 RKHCSTSCSSRPEGGEGKRFYRPVFPKRTHIAKNSAIQASKWRKGVREDDEKVSLKANLS 208
           RKHCSTSCSSRPEGGEGKRFYRPVFPKRTHIAKNSAIQASKWRKGVREDDEKVSLKANLS
Sbjct: 138 RKHCSTSCSSRPEGGEGKRFYRPVFPKRTHIAKNSAIQASKWRKGVREDDEKVSLKANLS 197

Query: 209 SK 210
           SK
Sbjct: 198 SK 199

[Close]

BLAST of Cp4.1LG13g10900 vs. NCBI nr
Match: XP_023549685.1 (MRN complex-interacting protein isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 361 bits (926), Expect = 2.81e-123
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 29  VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILD 88
           VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILD
Sbjct: 18  VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILD 77

Query: 89  EEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFTDGKIVTELPEEKT 148
           EEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFTDGKIVTELPEEKT
Sbjct: 78  EEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFTDGKIVTELPEEKT 137

Query: 149 RKHCSTSCSSRPEGGEGKRFYRPVFPKRTHIAKNSAIQASKWRKGVREDDEKVSLKANLS 208
           RKHCSTSCSSRPEGGEGKRFYRPVFPKRTHIAKNSAIQASKWRKGVREDDEKVSLKANLS
Sbjct: 138 RKHCSTSCSSRPEGGEGKRFYRPVFPKRTHIAKNSAIQASKWRKGVREDDEKVSLKANLS 197

Query: 209 SK 210
           SK
Sbjct: 198 SK 199

[Close]

BLAST of Cp4.1LG13g10900 vs. NCBI nr
Match: XP_022939429.1 (MRN complex-interacting protein isoform X1 [Cucurbita moschata])

HSP 1 Score: 347 bits (890), Expect = 3.68e-118
Identity = 178/184 (96.74%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 29  VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILD 88
           VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILD
Sbjct: 18  VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILD 77

Query: 89  EEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFTDGKIVTELPEEKT 148
           EEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDF DGK VTELPEEKT
Sbjct: 78  EEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFADGKFVTELPEEKT 137

Query: 149 RKHCSTSCSSRPEGGEGKRFYRPVFPKRTHIAKNSAIQASKWRKGVREDDEKVSLKA--N 208
           RKHCSTSCSSRPEG EGKRFYRPVFPKRTHIAKNSAIQASKWRKGVREDDEKVSLKA  +
Sbjct: 138 RKHCSTSCSSRPEGVEGKRFYRPVFPKRTHIAKNSAIQASKWRKGVREDDEKVSLKAKHH 197

Query: 209 LSSK 210
           LSSK
Sbjct: 198 LSSK 201

[Close]

BLAST of Cp4.1LG13g10900 vs. NCBI nr
Match: KAG7016395.1 (putative LRR receptor-like serine/threonine-protein kinase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 377 bits (967), Expect = 4.73e-118
Identity = 187/193 (96.89%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 8    NVDDLHRRPVFSMLHDAGTDLVKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFV 67
            NVDDLHRR VFSMLHDAGTDLVKQQR SGNKWICAVCNEKQSVQKVFARAPMAKDVRKFV
Sbjct: 1169 NVDDLHRRSVFSMLHDAGTDLVKQQRSSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFV 1228

Query: 68   QSFNMSRKYADEQTKVDEILDEEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENE 127
            QSFNMSRKYADEQTKVDEI DEEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENE
Sbjct: 1229 QSFNMSRKYADEQTKVDEIFDEEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENE 1288

Query: 128  RELGSDFTDGKIVTELPEEKTRKHCSTSCSSRPEGGEGKRFYRPVFPKRTHIAKNSAIQA 187
            RELGSDF DGK VTELPEEKTRKHCSTSCSSRPEGGEGKRFYRPVFPKRTHIAKNSAIQA
Sbjct: 1289 RELGSDFADGKFVTELPEEKTRKHCSTSCSSRPEGGEGKRFYRPVFPKRTHIAKNSAIQA 1348

Query: 188  SKWRKGVREDDEK 200
            SKW KGVREDDEK
Sbjct: 1349 SKWSKGVREDDEK 1361

[Close]

BLAST of Cp4.1LG13g10900 vs. ExPASy TrEMBL
Match: A0A6J1FH51 (MRN complex-interacting protein isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445345 PE=4 SV=1)

HSP 1 Score: 347 bits (890), Expect = 1.78e-118
Identity = 178/184 (96.74%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 29  VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILD 88
           VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILD
Sbjct: 18  VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILD 77

Query: 89  EEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFTDGKIVTELPEEKT 148
           EEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDF DGK VTELPEEKT
Sbjct: 78  EEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFADGKFVTELPEEKT 137

Query: 149 RKHCSTSCSSRPEGGEGKRFYRPVFPKRTHIAKNSAIQASKWRKGVREDDEKVSLKA--N 208
           RKHCSTSCSSRPEG EGKRFYRPVFPKRTHIAKNSAIQASKWRKGVREDDEKVSLKA  +
Sbjct: 138 RKHCSTSCSSRPEGVEGKRFYRPVFPKRTHIAKNSAIQASKWRKGVREDDEKVSLKAKHH 197

Query: 209 LSSK 210
           LSSK
Sbjct: 198 LSSK 201

[Close]

BLAST of Cp4.1LG13g10900 vs. ExPASy TrEMBL
Match: A0A6J1JWE4 (MRN complex-interacting protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488952 PE=4 SV=1)

HSP 1 Score: 340 bits (871), Expect = 1.25e-115
Identity = 174/184 (94.57%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 29  VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILD 88
           VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEI D
Sbjct: 18  VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEIFD 77

Query: 89  EEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFTDGKIVTELPEEKT 148
           EEIVDEDQLDFN KRKRRSDWSEYLDLEEDRSQTGRENERELGSDF DGKIVTELPEEKT
Sbjct: 78  EEIVDEDQLDFNEKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFADGKIVTELPEEKT 137

Query: 149 RKHCSTSCSSRPEGGEGKRFYRPVFPKRTHIAKNSAIQASKWRKGVREDDEKVSLKA--N 208
           RKHCSTSCS+RPE GEGK FYRPVFPKRTHIAKNSAIQASKW KGVREDDEKVSLKA  +
Sbjct: 138 RKHCSTSCSNRPESGEGKIFYRPVFPKRTHIAKNSAIQASKWSKGVREDDEKVSLKAKHH 197

Query: 209 LSSK 210
           LSSK
Sbjct: 198 LSSK 201

[Close]

BLAST of Cp4.1LG13g10900 vs. ExPASy TrEMBL
Match: A0A6J1FMP0 (MRN complex-interacting protein isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445345 PE=4 SV=1)

HSP 1 Score: 333 bits (854), Expect = 2.03e-113
Identity = 167/179 (93.30%), Postives = 170/179 (94.97%), Query Frame = 0


Query: 29  VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILD 88
           VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILD
Sbjct: 18  VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILD 77

Query: 89  EEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFTDGKIVTELPEEKT 148
           EEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDF DGK VTELPEEKT
Sbjct: 78  EEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFADGKFVTELPEEKT 137

Query: 149 RKHCSTSCSSRPEGGEGKRFYRPVFPKRTHIAKNSAIQASKWRKGVREDDEKVSLKANL 207
           RKHCSTSCSSRPEG EGKRFYRPVFPKRTHIAKNSAIQASKWRKGV +DDE   + A +
Sbjct: 138 RKHCSTSCSSRPEGVEGKRFYRPVFPKRTHIAKNSAIQASKWRKGVSKDDESACILAKV 196

[Close]

BLAST of Cp4.1LG13g10900 vs. ExPASy TrEMBL
Match: A0A6J1JU86 (MRN complex-interacting protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488952 PE=4 SV=1)

HSP 1 Score: 326 bits (836), Expect = 1.01e-110
Identity = 165/182 (90.66%), Postives = 167/182 (91.76%), Query Frame = 0


Query: 29  VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILD 88
           VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEI D
Sbjct: 18  VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEIFD 77

Query: 89  EEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFTDGKIVTELPEEKT 148
           EEIVDEDQLDFN KRKRRSDWSEYLDLEEDRSQTGRENERELGSDF DGKIVTELPEEKT
Sbjct: 78  EEIVDEDQLDFNEKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFADGKIVTELPEEKT 137

Query: 149 RKHCSTSCSSRPEGGEGKRFYRPVFPKRTHIAKNSAIQASKWRKGVREDDEKVSLKANLS 208
           RKHCSTSCS+RPE GEGK FYRPVFPKRTHIAKNSAIQASKW KGV +DDE    K    
Sbjct: 138 RKHCSTSCSNRPESGEGKIFYRPVFPKRTHIAKNSAIQASKWSKGVTKDDENACSKVGGP 197

Query: 209 SK 210
           SK
Sbjct: 198 SK 199

[Close]

BLAST of Cp4.1LG13g10900 vs. ExPASy TrEMBL
Match: A0A5D3BXL1 (UPF0544 protein C5orf45-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00830 PE=4 SV=1)

HSP 1 Score: 211 bits (538), Expect = 1.14e-64
Identity = 122/184 (66.30%), Postives = 135/184 (73.37%), Query Frame = 0


Query: 29  VKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILD 88
           VKQQR+SGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYA+EQ  VD+++ 
Sbjct: 18  VKQQRKSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYANEQANVDDLIH 77

Query: 89  EEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFTDGKIVTELPEEKT 148
             IVD+D+LD + +RKRR+DWSEYLD EEDRS +GRENE EL SD    KI TELP+ KT
Sbjct: 78  GGIVDDDKLDCSGRRKRRNDWSEYLDPEEDRSHSGRENEGELESDL---KIATELPDIKT 137

Query: 149 RKHCSTSCSSRPEGGEGKRFYRPVFPKRTHIAKN-------------SAIQASKWRKGVR 199
            K  S SCSS  EG EG   YRP+F KR HIAKN             SAI  SK  KG  
Sbjct: 138 WKSGSRSCSSWSEG-EGDGLYRPLFSKRKHIAKNLSSQDEIQNWESPSAIHTSKLSKG-- 194

[Close]

BLAST of Cp4.1LG13g10900 vs. TAIR 10
Match: AT1G71760.1 (unknown protein; Has 92 Blast hits to 92 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). )

HSP 1 Score: 106.7 bits (265), Expect = 2.4e-23
Identity = 67/165 (40.61%), Postives = 95/165 (57.58%), Query Frame = 0


Query: 22  HDAGTDLVKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQT 81
           ++  T  VKQ+++S NKW+C +CN+KQSV+KVFA+   AK++R FVQSFNMSRK ADE+ 
Sbjct: 12  YECSTMQVKQKKKSSNKWVCVICNQKQSVKKVFAQGYKAKELRFFVQSFNMSRKVADEEA 71

Query: 82  -KVDEILDEEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFTDGKIV 141
             V +   E  V+ +  +     K+RSDWS+YLD +         + R L  +  D KIV
Sbjct: 72  HAVGDSFPEVYVEGEVNEEVNGTKKRSDWSQYLDFD------SVNDRRRLAGEEDDVKIV 131

Query: 142 TELPEE-----KTRKHCSTSCSSRPEGGEGK---RFYRPVFPKRT 178
           TE+P       K  K  +   SS   GGE K     ++P F +R+
Sbjct: 132 TEMPSNMFKRPKLNKESNAGGSSSNTGGENKDSNEIFKPSFSRRS 170

[Close]

BLAST of Cp4.1LG13g10900 vs. TAIR 10
Match: AT1G71760.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 84 Blast hits to 84 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 106.7 bits (265), Expect = 2.4e-23
Identity = 67/165 (40.61%), Postives = 95/165 (57.58%), Query Frame = 0


Query: 22  HDAGTDLVKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQT 81
           ++  T  VKQ+++S NKW+C +CN+KQSV+KVFA+   AK++R FVQSFNMSRK ADE+ 
Sbjct: 12  YECSTMQVKQKKKSSNKWVCVICNQKQSVKKVFAQGYKAKELRFFVQSFNMSRKVADEEA 71

Query: 82  -KVDEILDEEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFTDGKIV 141
             V +   E  V+ +  +     K+RSDWS+YLD +         + R L  +  D KIV
Sbjct: 72  HAVGDSFPEVYVEGEVNEEVNGTKKRSDWSQYLDFD------SVNDRRRLAGEEDDVKIV 131

Query: 142 TELPEE-----KTRKHCSTSCSSRPEGGEGK---RFYRPVFPKRT 178
           TE+P       K  K  +   SS   GGE K     ++P F +R+
Sbjct: 132 TEMPSNMFKRPKLNKESNAGGSSSNTGGENKDSNEIFKPSFSRRS 170

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g10900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q32PP1	4.1e-04	30.14	MRN complex-interacting protein OS=Danio rerio OX=7955 GN=mrnip PE=2 SV=1	[more]

BLAST of Cp4.1LG13g10900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023549688.1	9.90e-124	100.00	MRN complex-interacting protein isoform X4 [Cucurbita pepo subsp. pepo]	[more]
XP_023549686.1	1.31e-123	100.00	MRN complex-interacting protein isoform X2 [Cucurbita pepo subsp. pepo] >XP_0235...	[more]
XP_023549685.1	2.81e-123	100.00	MRN complex-interacting protein isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022939429.1	3.68e-118	96.74	MRN complex-interacting protein isoform X1 [Cucurbita moschata]	[more]
KAG7016395.1	4.73e-118	96.89	putative LRR receptor-like serine/threonine-protein kinase, partial [Cucurbita a...	[more]

BLAST of Cp4.1LG13g10900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FH51	1.78e-118	96.74	MRN complex-interacting protein isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1JWE4	1.25e-115	94.57	MRN complex-interacting protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1FMP0	2.03e-113	93.30	MRN complex-interacting protein isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1JU86	1.01e-110	90.66	MRN complex-interacting protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A5D3BXL1	1.14e-64	66.30	UPF0544 protein C5orf45-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Cp4.1LG13g10900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G71760.1	2.4e-23	40.61	unknown protein; Has 92 Blast hits to 92 proteins in 41 species: Archae - 0; Bac...	[more]
AT1G71760.2	2.4e-23	40.61	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032739	MRN complex-interacting protein	PFAM	PF15749	MRNIP	coord: 31..116 e-value: 4.5E-12 score: 46.7
IPR032739	MRN complex-interacting protein	PANTHER	PTHR15863	MRN COMPLEX-INTERACTING PROTEIN	coord: 29..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g10900.1	Cp4.1LG13g10900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007095	mitotic G2 DNA damage checkpoint signaling
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding