Cp4.1LG13g09380 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g09380
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING-type E3 ubiquitin transferase
Location	Cp4.1LG13: 7459874 .. 7460386 (+)
RNA-Seq Expression	Cp4.1LG13g09380
Synteny	Cp4.1LG13g09380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCCAGCGACGCCGCCGTTTACAGCCAAAAACTCGACATCTTCCTCATTGCCGTCGGCTCCGCCGGCGCTGTCGTCACAATTTATCACTGCATCATGGCCTGTTGGTGTGACCGCCGCCGCCTCAACGCTGGCGACCAAACACCGGCGAACGACCTACACTCTATGTCGCTGGCGGAGACGCCACGGAGCACCGAGAATTCGGTCGTTCATTTGATTCCGGCCTACAAGTACGAGAAGCAAAAGGCGGTGGACAGCGGCGGATGCGATGGCGATGGCACGTGCGCCATCTGTTTGAGCGAGTTCGAGGAGGGGGAGGAAATAAGAACGTTGCCTGAGTGTCTGCATTCGTATCACGTGCCGTGTATCGACATGTGGCTCTACTCTCACTCAAGTTGTCCGATGTGTCGTACTGATGCTACTCCGACGTCGGTTCATGACAGGCTGCAGTTTGAGACGCAGCCGAGTTCTGGGATCATTGTGCACGTGCGACCCACGAGGAATGAGTAA

mRNA sequence

ATGTCATCCAGCGACGCCGCCGTTTACAGCCAAAAACTCGACATCTTCCTCATTGCCGTCGGCTCCGCCGGCGCTGTCGTCACAATTTATCACTGCATCATGGCCTGTTGGTGTGACCGCCGCCGCCTCAACGCTGGCGACCAAACACCGGCGAACGACCTACACTCTATGTCGCTGGCGGAGACGCCACGGAGCACCGAGAATTCGGTCGTTCATTTGATTCCGGCCTACAAGTACGAGAAGCAAAAGGCGGTGGACAGCGGCGGATGCGATGGCGATGGCACGTGCGCCATCTGTTTGAGCGAGTTCGAGGAGGGGGAGGAAATAAGAACGTTGCCTGAGTGTCTGCATTCGTATCACGTGCCGTGTATCGACATGTGGCTCTACTCTCACTCAAGTTGTCCGATGTGTCGTACTGATGCTACTCCGACGTCGGTTCATGACAGGCTGCAGTTTGAGACGCAGCCGAGTTCTGGGATCATTGTGCACGTGCGACCCACGAGGAATGAGTAA

Coding sequence (CDS)

ATGTCATCCAGCGACGCCGCCGTTTACAGCCAAAAACTCGACATCTTCCTCATTGCCGTCGGCTCCGCCGGCGCTGTCGTCACAATTTATCACTGCATCATGGCCTGTTGGTGTGACCGCCGCCGCCTCAACGCTGGCGACCAAACACCGGCGAACGACCTACACTCTATGTCGCTGGCGGAGACGCCACGGAGCACCGAGAATTCGGTCGTTCATTTGATTCCGGCCTACAAGTACGAGAAGCAAAAGGCGGTGGACAGCGGCGGATGCGATGGCGATGGCACGTGCGCCATCTGTTTGAGCGAGTTCGAGGAGGGGGAGGAAATAAGAACGTTGCCTGAGTGTCTGCATTCGTATCACGTGCCGTGTATCGACATGTGGCTCTACTCTCACTCAAGTTGTCCGATGTGTCGTACTGATGCTACTCCGACGTCGGTTCATGACAGGCTGCAGTTTGAGACGCAGCCGAGTTCTGGGATCATTGTGCACGTGCGACCCACGAGGAATGAGTAA

Protein sequence

MSSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAETPRSTENSVVHLIPAYKYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTRNE

Homology

[Close]

BLAST of Cp4.1LG13g09380 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.0e-18
Identity = 53/148 (35.81%), Postives = 82/148 (55.41%), Query Frame = 0


Query: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQT-PANDLHSMSLA 61
           SSS ++ +S  L I LI + ++  ++  Y+ +++ +C R    +  +T   N       +
Sbjct: 47  SSSSSSSFSPLL-IALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFS 106

Query: 62  ETPRSTEN------SVVHLIPAYKYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPE 121
            T R + N      S++  I  YKY+       G  DG   C++CLSEFEE E +R LP+
Sbjct: 107 STQRISTNGDGLNESMIKSITVYKYKS----GDGFVDG-SDCSVCLSEFEENESLRLLPK 166

Query: 122 CLHSYHVPCIDMWLYSHSSCPMCRTDAT 143
           C H++H+PCID WL SHS+CP+CR   T
Sbjct: 167 CNHAFHLPCIDTWLKSHSNCPLCRAFVT 188

[Close]

BLAST of Cp4.1LG13g09380 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-17
Identity = 57/177 (32.20%), Postives = 87/177 (49.15%), Query Frame = 0


Query: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61
           SSSD +     L I LI + ++  ++  Y+ +++ +C RRR N+   T A  ++ +S   
Sbjct: 52  SSSDFS----PLLIALIGILASAFILVSYYTLISKYCHRRRHNS-SSTSAAAINRISSDY 111

Query: 62  TPRSTEN-----------------------SVVHLIPAYKYEKQKAVDSGGCDGDGTCAI 121
           T + T N                       S++  I  YKY K       G      C++
Sbjct: 112 TWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKM-----DGFVESSDCSV 171

Query: 122 CLSEFEEGEEIRTLPECLHSYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQ 156
           CLSEF+E E +R LP+C H++HVPCID WL SHS+CP+CR     +S  + +    Q
Sbjct: 172 CLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDLTNQ 218

[Close]

BLAST of Cp4.1LG13g09380 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-16
Identity = 42/132 (31.82%), Postives = 72/132 (54.55%), Query Frame = 0


Query: 20  VGSAGAVVTIYHCIMACWCD-------RRRLNAGDQTPANDLHSMSLAETPRSTENSVVH 79
           + +A  +V+ Y  ++ C  +       RRR  + DQ P   L   S  E  R  + S + 
Sbjct: 52  LATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSDQNP---LMIYSPHEVNRGLDESAIR 111

Query: 80  LIPAYKYEKQKAV--DSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYHVPCIDMWLYS 139
            IP +K++K+  V  +         C++CL+EF+E E++R +P C H +H+ CID+WL  
Sbjct: 112 AIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQG 171

Query: 140 HSSCPMCRTDAT 143
           +++CP+CRT  +
Sbjct: 172 NANCPLCRTSVS 180

[Close]

BLAST of Cp4.1LG13g09380 vs. ExPASy Swiss-Prot
Match: O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.8e-16
Identity = 54/143 (37.76%), Postives = 65/143 (45.45%), Query Frame = 0


Query: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61
           + SD  V    L   LI V    AVV         W  R        +P   L   +L  
Sbjct: 24  AESDMVVILSALLCALICVAGLAAVV------RCAWLRRFTAGGDSPSPNKGLKKKALQS 83

Query: 62  TPRSTENSVVHLIPAYKYEKQKAVDSGGCDGDGT-CAICLSEFEEGEEIRTLPECLHSYH 121
            PRST  +            +    +   +GD T CAICL++F +GEEIR LP C HS+H
Sbjct: 84  LPRSTFTAA-----------ESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFH 143

Query: 122 VPCIDMWLYSHSSCPMCRTDATP 144
           V CID WL S SSCP CR   TP
Sbjct: 144 VECIDKWLVSRSSCPSCRRILTP 149

[Close]

BLAST of Cp4.1LG13g09380 vs. ExPASy Swiss-Prot
Match: Q67YI6 (RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 8.3e-16
Identity = 45/121 (37.19%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 38  CDRRRL-----NAGDQTPANDLHSMS---------LAETPRSTENSVVHLIPAYKYEK-- 97
           C RRRL      +   T ++DL S S          + +P   ++SV+  +P + Y    
Sbjct: 79  CRRRRLLHLSSASSASTSSSDLRSFSPFPFDSFHYSSYSPYGLDDSVIKTLPLFLYSAAA 138

Query: 98  ---QKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYHVPCIDMWLYSHSSCPMCR 140
              + AV          CA+CL EFEEG+ +RTLP C H++H+ CID WL SH +CP+CR
Sbjct: 139 CTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCR 198

[Close]

BLAST of Cp4.1LG13g09380 vs. NCBI nr
Match: XP_022939139.1 (RING-H2 finger protein ATL52-like [Cucurbita moschata] >KAG7016242.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 356 bits (914), Expect = 3.17e-124
Identity = 169/170 (99.41%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MSSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLA 60
           MSSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLA
Sbjct: 1   MSSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLA 60

Query: 61  ETPRSTENSVVHLIPAYKYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYH 120
           ETPRSTENSVVHLIPA+KYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYH
Sbjct: 61  ETPRSTENSVVHLIPAHKYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYH 120

Query: 121 VPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTRNE 170
           VPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTRNE
Sbjct: 121 VPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTRNE 170

[Close]

BLAST of Cp4.1LG13g09380 vs. NCBI nr
Match: XP_023551520.1 (probable E3 ubiquitin-protein ligase ATL44 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 358 bits (919), Expect = 6.96e-124
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MSSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLA 60
           MSSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLA
Sbjct: 1   MSSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLA 60

Query: 61  ETPRSTENSVVHLIPAYKYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYH 120
           ETPRSTENSVVHLIPAYKYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYH
Sbjct: 61  ETPRSTENSVVHLIPAYKYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYH 120

Query: 121 VPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTRNE 170
           VPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTRNE
Sbjct: 121 VPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTRNE 170

[Close]

BLAST of Cp4.1LG13g09380 vs. NCBI nr
Match: KAG6578710.1 (putative E3 ubiquitin-protein ligase ATL44, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 342 bits (877), Expect = 1.66e-114
Identity = 162/163 (99.39%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MSSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLA 60
           MSSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLA
Sbjct: 1   MSSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLA 60

Query: 61  ETPRSTENSVVHLIPAYKYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYH 120
           ETPRSTENSVVHLIPA+KYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYH
Sbjct: 61  ETPRSTENSVVHLIPAHKYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYH 120

Query: 121 VPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVH 163
           VPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVH
Sbjct: 121 VPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVH 163

[Close]

BLAST of Cp4.1LG13g09380 vs. NCBI nr
Match: XP_038889238.1 (probable E3 ubiquitin-protein ligase ATL44 [Benincasa hispida])

HSP 1 Score: 305 bits (780), Expect = 8.92e-104
Identity = 139/171 (81.29%), Postives = 155/171 (90.64%), Query Frame = 0


Query: 1   MSSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLA 60
           MS +DA +YS+KLDIFL+A+GSAGAVVTIYHCIMACWCDRRR N+G QTPAND HS+ + 
Sbjct: 1   MSDTDATIYSRKLDIFLVAIGSAGAVVTIYHCIMACWCDRRRFNSGGQTPANDPHSLPIT 60

Query: 61  ETPRSTENSVVHLIPAYKYEKQKAVDSGGC-----DGDGTCAICLSEFEEGEEIRTLPEC 120
           +TPRSTENSVVHLIPA+KYEK+ AVD GGC     +GDGTCAICLSEFEEGEEI+TLPEC
Sbjct: 61  DTPRSTENSVVHLIPAHKYEKRMAVDGGGCGGDHGEGDGTCAICLSEFEEGEEIKTLPEC 120

Query: 121 LHSYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRP 166
           +HSYHVPCIDMWLYSHSSCPMCRT+ATPTS HDRLQFETQPSSGI+VHV P
Sbjct: 121 MHSYHVPCIDMWLYSHSSCPMCRTNATPTSFHDRLQFETQPSSGIVVHVLP 171

[Close]

BLAST of Cp4.1LG13g09380 vs. NCBI nr
Match: XP_008458935.1 (PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo] >KAA0042487.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa] >TYK22889.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa])

HSP 1 Score: 293 bits (749), Expect = 5.83e-99
Identity = 135/173 (78.03%), Postives = 154/173 (89.02%), Query Frame = 0


Query: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61
           S+ DAA+YS+KLDIFLIA+GSAGAVVTIYHCIMACWCDRRR  +GDQ+ AND H++ + +
Sbjct: 4   STGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFTSGDQSSANDPHTLPITD 63

Query: 62  TPRSTENSVVHLIPAYKYEKQKAVDSGG------CDGDGTCAICLSEFEEGEEIRTLPEC 121
           TPRSTENSVVHLIPA+KYEK+ AVD GG       DGDGTCAICLSEFEEGEEI+TLPEC
Sbjct: 64  TPRSTENSVVHLIPAHKYEKRMAVDGGGGGVGKDVDGDGTCAICLSEFEEGEEIKTLPEC 123

Query: 122 LHSYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTR 168
            HSYH+PCIDMWLYSHSSCPMCRT+ATPTS +DRLQF+TQP+SGI+VHV PTR
Sbjct: 124 KHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFQTQPNSGIVVHVLPTR 176

[Close]

BLAST of Cp4.1LG13g09380 vs. ExPASy TrEMBL
Match: A0A6J1FG87 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111445137 PE=3 SV=1)

HSP 1 Score: 356 bits (914), Expect = 1.53e-124
Identity = 169/170 (99.41%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MSSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLA 60
           MSSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLA
Sbjct: 1   MSSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLA 60

Query: 61  ETPRSTENSVVHLIPAYKYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYH 120
           ETPRSTENSVVHLIPA+KYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYH
Sbjct: 61  ETPRSTENSVVHLIPAHKYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYH 120

Query: 121 VPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTRNE 170
           VPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTRNE
Sbjct: 121 VPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTRNE 170

[Close]

BLAST of Cp4.1LG13g09380 vs. ExPASy TrEMBL
Match: A0A5D3DI14 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold334G00280 PE=3 SV=1)

HSP 1 Score: 293 bits (749), Expect = 2.82e-99
Identity = 135/173 (78.03%), Postives = 154/173 (89.02%), Query Frame = 0


Query: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61
           S+ DAA+YS+KLDIFLIA+GSAGAVVTIYHCIMACWCDRRR  +GDQ+ AND H++ + +
Sbjct: 4   STGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFTSGDQSSANDPHTLPITD 63

Query: 62  TPRSTENSVVHLIPAYKYEKQKAVDSGG------CDGDGTCAICLSEFEEGEEIRTLPEC 121
           TPRSTENSVVHLIPA+KYEK+ AVD GG       DGDGTCAICLSEFEEGEEI+TLPEC
Sbjct: 64  TPRSTENSVVHLIPAHKYEKRMAVDGGGGGVGKDVDGDGTCAICLSEFEEGEEIKTLPEC 123

Query: 122 LHSYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTR 168
            HSYH+PCIDMWLYSHSSCPMCRT+ATPTS +DRLQF+TQP+SGI+VHV PTR
Sbjct: 124 KHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFQTQPNSGIVVHVLPTR 176

[Close]

BLAST of Cp4.1LG13g09380 vs. ExPASy TrEMBL
Match: A0A1S3C9L0 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103498194 PE=3 SV=1)

HSP 1 Score: 293 bits (749), Expect = 2.82e-99
Identity = 135/173 (78.03%), Postives = 154/173 (89.02%), Query Frame = 0


Query: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61
           S+ DAA+YS+KLDIFLIA+GSAGAVVTIYHCIMACWCDRRR  +GDQ+ AND H++ + +
Sbjct: 4   STGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFTSGDQSSANDPHTLPITD 63

Query: 62  TPRSTENSVVHLIPAYKYEKQKAVDSGG------CDGDGTCAICLSEFEEGEEIRTLPEC 121
           TPRSTENSVVHLIPA+KYEK+ AVD GG       DGDGTCAICLSEFEEGEEI+TLPEC
Sbjct: 64  TPRSTENSVVHLIPAHKYEKRMAVDGGGGGVGKDVDGDGTCAICLSEFEEGEEIKTLPEC 123

Query: 122 LHSYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTR 168
            HSYH+PCIDMWLYSHSSCPMCRT+ATPTS +DRLQF+TQP+SGI+VHV PTR
Sbjct: 124 KHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFQTQPNSGIVVHVLPTR 176

[Close]

BLAST of Cp4.1LG13g09380 vs. ExPASy TrEMBL
Match: A0A0A0KNT5 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G512950 PE=3 SV=1)

HSP 1 Score: 289 bits (739), Expect = 8.81e-98
Identity = 134/171 (78.36%), Postives = 152/171 (88.89%), Query Frame = 0


Query: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61
           S+ DAA+YS+KLDIFLIA+GSAGAVVTIYHCIMACWCDRRR  +GDQ+  ND H++ + +
Sbjct: 4   STGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLPITD 63

Query: 62  TPRSTENSVVHLIPAYKYEKQKAVDSGG----CDGDGTCAICLSEFEEGEEIRTLPECLH 121
           TPRSTENSVVHLIPA+KYEK+ AVD GG     DGDGTCAICLSEFEEGEEI+TLPEC H
Sbjct: 64  TPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPECKH 123

Query: 122 SYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTR 168
           SYH+PCIDMWLYSHSSCPMCRT+ATPTS +DRLQFETQ +SGI+VHV PTR
Sbjct: 124 SYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVHVLPTR 174

[Close]

BLAST of Cp4.1LG13g09380 vs. ExPASy TrEMBL
Match: A0A6J1BX43 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111006127 PE=3 SV=1)

HSP 1 Score: 235 bits (600), Expect = 1.27e-76
Identity = 125/175 (71.43%), Postives = 136/175 (77.71%), Query Frame = 0


Query: 1   MSSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGD-QTPA-NDLHSMS 60
           MS S+A  YS KLDIFLIAVGSAG VVTIYHCIMACWCDRRR + G  QTPA  DLHS+ 
Sbjct: 6   MSPSEAIAYSHKLDIFLIAVGSAGIVVTIYHCIMACWCDRRRPSGGGGQTPAARDLHSLP 65

Query: 61  LAETPRSTENSVVHLIPAYKYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPECLHS 120
             ETPRSTENSVVHLIPA+KYEK+  +D     GDGTCAICLSEFEEGE++RTLPEC+HS
Sbjct: 66  GLETPRSTENSVVHLIPAHKYEKR--MDHLEV-GDGTCAICLSEFEEGEDLRTLPECMHS 125

Query: 121 YHVPCIDMWLYSHSSCPMCRTDATPTS-----VHDRLQFETQPSSGIIVHVRPTR 168
           YHVPCIDMWLYSHSSCPMCR DATPT        D L  E    S ++VHVR TR
Sbjct: 126 YHVPCIDMWLYSHSSCPMCRADATPTPSSPAVFRDGLDSE----SVVVVHVRATR 173

[Close]

BLAST of Cp4.1LG13g09380 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-19
Identity = 53/148 (35.81%), Postives = 82/148 (55.41%), Query Frame = 0


Query: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQT-PANDLHSMSLA 61
           SSS ++ +S  L I LI + ++  ++  Y+ +++ +C R    +  +T   N       +
Sbjct: 47  SSSSSSSFSPLL-IALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFS 106

Query: 62  ETPRSTEN------SVVHLIPAYKYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPE 121
            T R + N      S++  I  YKY+       G  DG   C++CLSEFEE E +R LP+
Sbjct: 107 STQRISTNGDGLNESMIKSITVYKYKS----GDGFVDG-SDCSVCLSEFEENESLRLLPK 166

Query: 122 CLHSYHVPCIDMWLYSHSSCPMCRTDAT 143
           C H++H+PCID WL SHS+CP+CR   T
Sbjct: 167 CNHAFHLPCIDTWLKSHSNCPLCRAFVT 188

[Close]

BLAST of Cp4.1LG13g09380 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 91.3 bits (225), Expect = 8.2e-19
Identity = 57/177 (32.20%), Postives = 87/177 (49.15%), Query Frame = 0


Query: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61
           SSSD +     L I LI + ++  ++  Y+ +++ +C RRR N+   T A  ++ +S   
Sbjct: 52  SSSDFS----PLLIALIGILASAFILVSYYTLISKYCHRRRHNS-SSTSAAAINRISSDY 111

Query: 62  TPRSTEN-----------------------SVVHLIPAYKYEKQKAVDSGGCDGDGTCAI 121
           T + T N                       S++  I  YKY K       G      C++
Sbjct: 112 TWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKM-----DGFVESSDCSV 171

Query: 122 CLSEFEEGEEIRTLPECLHSYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQ 156
           CLSEF+E E +R LP+C H++HVPCID WL SHS+CP+CR     +S  + +    Q
Sbjct: 172 CLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDLTNQ 218

[Close]

BLAST of Cp4.1LG13g09380 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 87.8 bits (216), Expect = 9.1e-18
Identity = 42/132 (31.82%), Postives = 72/132 (54.55%), Query Frame = 0


Query: 20  VGSAGAVVTIYHCIMACWCD-------RRRLNAGDQTPANDLHSMSLAETPRSTENSVVH 79
           + +A  +V+ Y  ++ C  +       RRR  + DQ P   L   S  E  R  + S + 
Sbjct: 52  LATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSDQNP---LMIYSPHEVNRGLDESAIR 111

Query: 80  LIPAYKYEKQKAV--DSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYHVPCIDMWLYS 139
            IP +K++K+  V  +         C++CL+EF+E E++R +P C H +H+ CID+WL  
Sbjct: 112 AIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQG 171

Query: 140 HSSCPMCRTDAT 143
           +++CP+CRT  +
Sbjct: 172 NANCPLCRTSVS 180

[Close]

BLAST of Cp4.1LG13g09380 vs. TAIR 10
Match: AT2G17450.1 (RING-H2 finger A3A )

HSP 1 Score: 85.9 bits (211), Expect = 3.4e-17
Identity = 54/143 (37.76%), Postives = 65/143 (45.45%), Query Frame = 0


Query: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61
           + SD  V    L   LI V    AVV         W  R        +P   L   +L  
Sbjct: 24  AESDMVVILSALLCALICVAGLAAVV------RCAWLRRFTAGGDSPSPNKGLKKKALQS 83

Query: 62  TPRSTENSVVHLIPAYKYEKQKAVDSGGCDGDGT-CAICLSEFEEGEEIRTLPECLHSYH 121
            PRST  +            +    +   +GD T CAICL++F +GEEIR LP C HS+H
Sbjct: 84  LPRSTFTAA-----------ESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFH 143

Query: 122 VPCIDMWLYSHSSCPMCRTDATP 144
           V CID WL S SSCP CR   TP
Sbjct: 144 VECIDKWLVSRSSCPSCRRILTP 149

[Close]

BLAST of Cp4.1LG13g09380 vs. TAIR 10
Match: AT3G18930.1 (RING/U-box superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 5.9e-17
Identity = 45/121 (37.19%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 38  CDRRRL-----NAGDQTPANDLHSMS---------LAETPRSTENSVVHLIPAYKYEK-- 97
           C RRRL      +   T ++DL S S          + +P   ++SV+  +P + Y    
Sbjct: 79  CRRRRLLHLSSASSASTSSSDLRSFSPFPFDSFHYSSYSPYGLDDSVIKTLPLFLYSAAA 138

Query: 98  ---QKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYHVPCIDMWLYSHSSCPMCR 140
              + AV          CA+CL EFEEG+ +RTLP C H++H+ CID WL SH +CP+CR
Sbjct: 139 CTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCR 198

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g09380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LF64	3.0e-18	35.81	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9SRQ8	1.2e-17	32.20	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]
P93823	1.3e-16	31.82	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]
O22755	4.8e-16	37.76	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]
Q67YI6	8.3e-16	37.19	RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2	[more]

BLAST of Cp4.1LG13g09380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939139.1	3.17e-124	99.41	RING-H2 finger protein ATL52-like [Cucurbita moschata] >KAG7016242.1 RING-H2 fin...	[more]
XP_023551520.1	6.96e-124	100.00	probable E3 ubiquitin-protein ligase ATL44 [Cucurbita pepo subsp. pepo]	[more]
KAG6578710.1	1.66e-114	99.39	putative E3 ubiquitin-protein ligase ATL44, partial [Cucurbita argyrosperma subs...	[more]
XP_038889238.1	8.92e-104	81.29	probable E3 ubiquitin-protein ligase ATL44 [Benincasa hispida]	[more]
XP_008458935.1	5.83e-99	78.03	PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo] >KAA0042487.1 RING-H...	[more]

BLAST of Cp4.1LG13g09380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FG87	1.53e-124	99.41	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111445137...	[more]
A0A5D3DI14	2.82e-99	78.03	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C9L0	2.82e-99	78.03	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103498194 PE=3 ...	[more]
A0A0A0KNT5	8.81e-98	78.36	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G512950 PE...	[more]
A0A6J1BX43	1.27e-76	71.43	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11100612...	[more]

BLAST of Cp4.1LG13g09380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17600.1	2.2e-19	35.81	RING/U-box superfamily protein	[more]
AT3G03550.1	8.2e-19	32.20	RING/U-box superfamily protein	[more]
AT1G04360.1	9.1e-18	31.82	RING/U-box superfamily protein	[more]
AT2G17450.1	3.4e-17	37.76	RING-H2 finger A3A	[more]
AT3G18930.1	5.9e-17	37.19	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 96..137 e-value: 8.5E-7 score: 38.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 95..138 e-value: 1.3E-12 score: 47.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 96..138 score: 12.120453
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 52..144 e-value: 1.0E-21 score: 78.4
None	No IPR available	PANTHER	PTHR45676:SF43	RING-H2 FINGER PROTEIN ATL52-LIKE	coord: 8..150
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 95..143
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 8..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g09380.1	Cp4.1LG13g09380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane