Cp4.1LG13g09020 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g09020
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RNA exonuclease 4
Location	Cp4.1LG13: 7736009 .. 7737153 (+)
RNA-Seq Expression	Cp4.1LG13g09020
Synteny	Cp4.1LG13g09020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTTAGCTCTTTACCTTCAAAATCTTGAATCCTCCTTTCTTTTTTGGCTGTTTTGATCAGGGGCTTCTTGCTCGTTTGGCCAGCTTGGGAATTCGCGATGGTTCAACCGCCATCGACGGTGGAAGAACTCGAGGCTCCGGTCCCGTGGCGTTAGCTTGCAAATATGTAGGTGGCGGCGATGGGTCGCTGGATGTCTGCGCCAAGGTCTGCCTTATTGATGAGAGTGAAAATATCGTCTTCTATAGCTATGTCAAGCCCATAATTCCCGTTACAAATTATAGGTAAGTTATTTTTCGTGGCGAATCCTTTAAAATTTAGAGACCAAATAAACCTAATTCTATTTTAGAATTGGAGTATAATTTTTTTATAATTTAACCGCTTTGATATGTAAAAATAAAATTAGGTATGAAACGACGGGCATTCGTCCCGAACACCTTCGAGATGCAATGCCACTAAAGCAAGTTCAAAAGAAAATTCAAGACATCCTCTACAATGGAGGTGAGAAAGCTAGGGTTCTTGTGGGTCACTGTGTGGAAGACGATCTCAAACGTCTACAAATCGGATATCCATCCATCATGATAAGGTAAATTCTTCAAACAAAAATTAAATTTATCGTGACCCATCAACTCAAAATTTTAAATTTCTTATCGAGATTTGAAGTTCTAACCTTATATCAACTTTTTACGAAACCCTTTTAAGATCTTGACGAAGATTGCTTGGTTTCATGCACTGATCCACAGGGACATAGCAAATTATCCGCCATTGATGAAGACAAGCAAGCTTTGCAATTCACTCAAGTATCTAGCTCAAGTGTATCTTGGGCAAGTACCATTTTCAATTCAAATTTCATTCAAAAACGAACACGATTTTTAAAAAATAACACACGAAATGATTATCGAGCAACGTTTATGTAATAAACGAATAATTGGTATTTGTTATTGTAGATTTGAGATTCAAAATGGAGTACAAGATCTTTATGATTGTGTTGGTGGCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGCATCATCCAATGGCTTCTGACCCACAAAACAAAAACAACTTTGCAGCTTGGAGGGAGAATGAGCTTGAGAGGATGAGCCCAGAACAGATGTTGGAGATTTCT

mRNA sequence

ATGAAAGGGCTTCTTGCTCGTTTGGCCAGCTTGGGAATTCGCGATGGTTCAACCGCCATCGACGGTGGAAGAACTCGAGGCTCCGGTCCCGTGGCGTTAGCTTGCAAATATGTAGGTGGCGGCGATGGGTCGCTGGATGTCTGCGCCAAGGTCTGCCTTATTGATGAGAGTGAAAATATCGTCTTCTATAGCTATGTCAAGCCCATAATTCCCGTTACAAATTATAGGTATGAAACGACGGGCATTCGTCCCGAACACCTTCGAGATGCAATGCCACTAAAGCAAGTTCAAAAGAAAATTCAAGACATCCTCTACAATGGAGGTGAGAAAGCTAGGGTTCTTGTGGGTCACTGTGTGGAAGACGATCTCAAACGTCTACAAATCGGATATCCATCCATCATGATAAGATTTGAGATTCAAAATGGAGTACAAGATCTTTATGATTGTGTTGGTGGCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGCATCATCCAATGGCTTCTGACCCACAAAACAAAAACAACTTTGCAGCTTGGAGGGAGAATGAGCTTGAGAGGATGAGCCCAGAACAGATGTTGGAGATTTCT

Coding sequence (CDS)

ATGAAAGGGCTTCTTGCTCGTTTGGCCAGCTTGGGAATTCGCGATGGTTCAACCGCCATCGACGGTGGAAGAACTCGAGGCTCCGGTCCCGTGGCGTTAGCTTGCAAATATGTAGGTGGCGGCGATGGGTCGCTGGATGTCTGCGCCAAGGTCTGCCTTATTGATGAGAGTGAAAATATCGTCTTCTATAGCTATGTCAAGCCCATAATTCCCGTTACAAATTATAGGTATGAAACGACGGGCATTCGTCCCGAACACCTTCGAGATGCAATGCCACTAAAGCAAGTTCAAAAGAAAATTCAAGACATCCTCTACAATGGAGGTGAGAAAGCTAGGGTTCTTGTGGGTCACTGTGTGGAAGACGATCTCAAACGTCTACAAATCGGATATCCATCCATCATGATAAGATTTGAGATTCAAAATGGAGTACAAGATCTTTATGATTGTGTTGGTGGCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGCATCATCCAATGGCTTCTGACCCACAAAACAAAAACAACTTTGCAGCTTGGAGGGAGAATGAGCTTGAGAGGATGAGCCCAGAACAGATGTTGGAGATTTCT

Protein sequence

MKGLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENIVFYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIRFEIQNGVQDLYDCVGGMRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS

Homology

[Close]

BLAST of Cp4.1LG13g09020 vs. ExPASy Swiss-Prot
Match: Q9GZR2 (RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-14
Identity = 51/134 (38.06%), Postives = 77/134 (57.46%), Query Frame = 0


Query: 11  LGIRDGSTAID-------GGRTRGSGPVALACKYVG-GGDGSLDVCAKVCLIDESENIVF 70
           LG  +GS ++        GG TR    +AL C+ VG G  G   + A+V ++++    V+
Sbjct: 220 LGQSEGSVSLSLVKEQAFGGLTRA---LALDCEMVGVGPKGEESMAARVSIVNQYGKCVY 279

Query: 71  YSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDD 130
             YVKP  PVT+YR   +GIRPE+L+    L+ VQK++ ++L     K R+LVGH + +D
Sbjct: 280 DKYVKPTEPVTDYRTAVSGIRPENLKQGEELEVVQKEVAEML-----KGRILVGHALHND 339

Query: 131 LKRLQIGYPSIMIR 137
           LK L + +P   IR
Sbjct: 340 LKVLFLDHPKKKIR 345

[Close]

BLAST of Cp4.1LG13g09020 vs. ExPASy Swiss-Prot
Match: Q6CMT3 (RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=REX4 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-13
Identity = 43/115 (37.39%), Postives = 69/115 (60.00%), Query Frame = 0


Query: 24  RTRGSGP-VALACKYVG-GGDGSLDVCAKVCLIDESENIVFYSYVKPIIPVTNYRYETTG 83
           RT G G  V++ C++VG G DG     A+V +++   N+V   +V+P  PVT++R   +G
Sbjct: 112 RTNGVGKYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSG 171

Query: 84  IRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR 137
           I+P H+ +A+  +  QK++ ++L     K R+LVGH V  DL  L + +P  MIR
Sbjct: 172 IKPHHMANAVTQEDCQKQVSNVL-----KGRILVGHSVHHDLTALMLSHPRRMIR 221

[Close]

BLAST of Cp4.1LG13g09020 vs. ExPASy Swiss-Prot
Match: Q91560 (RNA exonuclease 4 OS=Xenopus laevis OX=8355 GN=rexo4 PE=2 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-13
Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 31  VALACKYVG-GGDGSLDVCAKVCLIDESENIVFYSYVKPIIPVTNYRYETTGIRPEHLRD 90
           VA+ C+ VG G DG   + A+V +++     V+  YVKP   VT+YR   +GIRPE ++ 
Sbjct: 235 VAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPEDVKK 294

Query: 91  AMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR 137
             P K VQK++ +IL     + R LVGH V +DLK L + +P   IR
Sbjct: 295 GEPFKVVQKEVSEIL-----RGRTLVGHAVHNDLKILFLDHPKKAIR 336

[Close]

BLAST of Cp4.1LG13g09020 vs. ExPASy Swiss-Prot
Match: Q6PAQ4 (RNA exonuclease 4 OS=Mus musculus OX=10090 GN=Rexo4 PE=2 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 3.5e-13
Identity = 44/116 (37.93%), Postives = 69/116 (59.48%), Query Frame = 0


Query: 22  GGRTRGSGPVALACKYVG-GGDGSLDVCAKVCLIDESENIVFYSYVKPIIPVTNYRYETT 81
           GG T+    +AL C+ VG G  G   + A+V ++++    V+  YVKP  PVT+YR   +
Sbjct: 248 GGLTKA---LALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVS 307

Query: 82  GIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR 137
           GIRPE+L+     + V+K++ ++L     K R+LVGH + +DLK L + +P   IR
Sbjct: 308 GIRPENLKQGEEFEVVKKEVAEML-----KGRILVGHALHNDLKVLFLDHPKKKIR 355

[Close]

BLAST of Cp4.1LG13g09020 vs. ExPASy Swiss-Prot
Match: Q08237 (RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=REX4 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.7e-13
Identity = 39/121 (32.23%), Postives = 73/121 (60.33%), Query Frame = 0


Query: 18  TAIDGGRTRGSGP-VALACKYVG-GGDGSLDVCAKVCLIDESENIVFYSYVKPIIPVTNY 77
           T I+  +++  G  +A+ C++VG G +G     A++ +++   ++V   +VKP   V  +
Sbjct: 108 TRINSNKSKEIGKYIAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEW 167

Query: 78  RYETTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMI 137
           R   +GI+PEH+++A+  K+ QKK  DIL     + R+LVGH ++ DL+ L + +P  ++
Sbjct: 168 RTWVSGIKPEHMKNAITFKEAQKKTADIL-----EGRILVGHALKHDLEALMLSHPKSLL 223

[Close]

BLAST of Cp4.1LG13g09020 vs. NCBI nr
Match: KAG6578645.1 (hypothetical protein SDJN03_23093, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 393 bits (1009), Expect = 6.49e-136
Identity = 193/201 (96.02%), Postives = 197/201 (98.01%), Query Frame = 0


Query: 2   KGLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENIV 61
            GLLARLA+LGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESEN++
Sbjct: 103 SGLLARLANLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVI 162

Query: 62  FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED 121
           FYSYVKPIIPVTNYRYE TGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED
Sbjct: 163 FYSYVKPIIPVTNYRYEMTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED 222

Query: 122 DLKRLQIGYPSIMIRFEIQNGVQDLYD-CVGGMRLYKRMRSQVHRIEHHPMASDPQNKNN 181
           DLKRLQIGYPSIMIRFEIQNGVQD Y+ CVGGMRLYKRMRSQVHRIEHHPMASDPQNKNN
Sbjct: 223 DLKRLQIGYPSIMIRFEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPMASDPQNKNN 282

Query: 182 FAAWRENELERMSPEQMLEIS 201
           FAAWRENELERMSPEQMLEIS
Sbjct: 283 FAAWRENELERMSPEQMLEIS 303

[Close]

BLAST of Cp4.1LG13g09020 vs. NCBI nr
Match: XP_023551468.1 (RNA exonuclease 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 391 bits (1005), Expect = 6.50e-135
Identity = 199/227 (87.67%), Postives = 199/227 (87.67%), Query Frame = 0


Query: 2   KGLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENIV 61
            GLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENIV
Sbjct: 103 SGLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENIV 162

Query: 62  FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED 121
           FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED
Sbjct: 163 FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED 222

Query: 122 DLKRLQIGYPSIMIR---------------------------FEIQNGVQDLYDCVGGMR 181
           DLKRLQIGYPSIMIR                           FEIQNGVQDLYDCVGGMR
Sbjct: 223 DLKRLQIGYPSIMIRDIANYPPLMKTSKLCNSLKYLAQVYLGFEIQNGVQDLYDCVGGMR 282

Query: 182 LYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 201
           LYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS
Sbjct: 283 LYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 329

[Close]

BLAST of Cp4.1LG13g09020 vs. NCBI nr
Match: KAG7016187.1 (REX4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 380 bits (976), Expect = 2.61e-130
Identity = 193/225 (85.78%), Postives = 198/225 (88.00%), Query Frame = 0


Query: 2   KGLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENIV 61
           +GLLARLA+LGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESEN++
Sbjct: 118 RGLLARLANLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVI 177

Query: 62  FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED 121
           FYSYVKPIIPVTNYRYE TGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED
Sbjct: 178 FYSYVKPIIPVTNYRYEMTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED 237

Query: 122 DLKRLQIGYPSIMIR------------------------FEIQNGVQDLYD-CVGGMRLY 181
           DLKRLQIGYPSIMIR                        FEIQNGVQD Y+ CVGGMRLY
Sbjct: 238 DLKRLQIGYPSIMIRDIANYPPLMKTSKLCNSLKYLAQVFEIQNGVQDPYEECVGGMRLY 297

Query: 182 KRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 201
           KRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS
Sbjct: 298 KRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 342

[Close]

BLAST of Cp4.1LG13g09020 vs. NCBI nr
Match: XP_022938612.1 (RNA exonuclease 4-like [Cucurbita moschata])

HSP 1 Score: 376 bits (966), Expect = 5.75e-129
Identity = 192/228 (84.21%), Postives = 197/228 (86.40%), Query Frame = 0


Query: 2   KGLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENIV 61
            GLLARLA+LGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESEN++
Sbjct: 103 SGLLARLANLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVI 162

Query: 62  FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED 121
           FYSYVKPIIPVTNYRYE TGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED
Sbjct: 163 FYSYVKPIIPVTNYRYEMTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED 222

Query: 122 DLKRLQIGYPSIMIR---------------------------FEIQNGVQDLYD-CVGGM 181
           DLKRLQIGYPSIMIR                           FEIQNGVQD Y+ CVGGM
Sbjct: 223 DLKRLQIGYPSIMIRDIANYPPLMKTSKLCNSLKYLAQVYLGFEIQNGVQDPYEECVGGM 282

Query: 182 RLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 201
           RLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRE+ELERMSPEQMLEIS
Sbjct: 283 RLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRESELERMSPEQMLEIS 330

[Close]

BLAST of Cp4.1LG13g09020 vs. NCBI nr
Match: XP_022993635.1 (RNA exonuclease 4-like [Cucurbita maxima])

HSP 1 Score: 375 bits (964), Expect = 1.16e-128
Identity = 191/228 (83.77%), Postives = 197/228 (86.40%), Query Frame = 0


Query: 2   KGLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENIV 61
            GLLARLA+LGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESEN++
Sbjct: 103 SGLLARLANLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVI 162

Query: 62  FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED 121
           FYSYVKP IPVTNYRYETTGIRPEH+RDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED
Sbjct: 163 FYSYVKPTIPVTNYRYETTGIRPEHVRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED 222

Query: 122 DLKRLQIGYPSIMIR---------------------------FEIQNGVQDLYD-CVGGM 181
           DLKRLQIGYPSIMIR                           FEIQNGVQD Y+ CVGGM
Sbjct: 223 DLKRLQIGYPSIMIRDIANYPPLMKTSKLCNSLKYLAQVYLGFEIQNGVQDPYEECVGGM 282

Query: 182 RLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 201
           RLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRE+ELERMSPEQMLEIS
Sbjct: 283 RLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRESELERMSPEQMLEIS 330

[Close]

BLAST of Cp4.1LG13g09020 vs. ExPASy TrEMBL
Match: A0A6J1FEK0 (RNA exonuclease 4 OS=Cucurbita moschata OX=3662 GN=LOC111444794 PE=3 SV=1)

HSP 1 Score: 376 bits (966), Expect = 2.79e-129
Identity = 192/228 (84.21%), Postives = 197/228 (86.40%), Query Frame = 0


Query: 2   KGLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENIV 61
            GLLARLA+LGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESEN++
Sbjct: 103 SGLLARLANLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVI 162

Query: 62  FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED 121
           FYSYVKPIIPVTNYRYE TGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED
Sbjct: 163 FYSYVKPIIPVTNYRYEMTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED 222

Query: 122 DLKRLQIGYPSIMIR---------------------------FEIQNGVQDLYD-CVGGM 181
           DLKRLQIGYPSIMIR                           FEIQNGVQD Y+ CVGGM
Sbjct: 223 DLKRLQIGYPSIMIRDIANYPPLMKTSKLCNSLKYLAQVYLGFEIQNGVQDPYEECVGGM 282

Query: 182 RLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 201
           RLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRE+ELERMSPEQMLEIS
Sbjct: 283 RLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRESELERMSPEQMLEIS 330

[Close]

BLAST of Cp4.1LG13g09020 vs. ExPASy TrEMBL
Match: A0A6J1JZ30 (RNA exonuclease 4 OS=Cucurbita maxima OX=3661 GN=LOC111489566 PE=3 SV=1)

HSP 1 Score: 375 bits (964), Expect = 5.61e-129
Identity = 191/228 (83.77%), Postives = 197/228 (86.40%), Query Frame = 0


Query: 2   KGLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENIV 61
            GLLARLA+LGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESEN++
Sbjct: 103 SGLLARLANLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVI 162

Query: 62  FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED 121
           FYSYVKP IPVTNYRYETTGIRPEH+RDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED
Sbjct: 163 FYSYVKPTIPVTNYRYETTGIRPEHVRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED 222

Query: 122 DLKRLQIGYPSIMIR---------------------------FEIQNGVQDLYD-CVGGM 181
           DLKRLQIGYPSIMIR                           FEIQNGVQD Y+ CVGGM
Sbjct: 223 DLKRLQIGYPSIMIRDIANYPPLMKTSKLCNSLKYLAQVYLGFEIQNGVQDPYEECVGGM 282

Query: 182 RLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 201
           RLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRE+ELERMSPEQMLEIS
Sbjct: 283 RLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRESELERMSPEQMLEIS 330

[Close]

BLAST of Cp4.1LG13g09020 vs. ExPASy TrEMBL
Match: A0A6J1BXL4 (RNA exonuclease 4 OS=Momordica charantia OX=3673 GN=LOC111006633 PE=3 SV=1)

HSP 1 Score: 324 bits (831), Expect = 8.85e-109
Identity = 164/227 (72.25%), Postives = 182/227 (80.18%), Query Frame = 0


Query: 2   KGLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENI 61
            GLLARLA+LGIRD S  +DGGR R +G VALACKYVGGG DGSLD+CAKVCLIDE+EN+
Sbjct: 103 SGLLARLANLGIRDASIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENV 162

Query: 62  VFYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVE 121
           +FYSYVKPIIPVTNYR+ETTGIRPEHLRDAMPLKQVQKKIQ+ILYNGGEKARVLVGH VE
Sbjct: 163 IFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILYNGGEKARVLVGHGVE 222

Query: 122 DDLKRLQIGYP-------------------------SIMIRFEIQNGVQDLY-DCVGGMR 181
           DDLKRLQIGYP                          + + F+IQNG+QD Y DCV  MR
Sbjct: 223 DDLKRLQIGYPIIRDTANYPPLMKTSKLCNSLKYLAQVYLGFDIQNGIQDPYEDCVASMR 282

Query: 182 LYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 201
           LYKRMRSQVH+IE +PMASDPQNKNNF  WR+NELERM+PE ML+IS
Sbjct: 283 LYKRMRSQVHKIEDYPMASDPQNKNNFGIWRQNELERMTPEHMLDIS 329

[Close]

BLAST of Cp4.1LG13g09020 vs. ExPASy TrEMBL
Match: A0A6J1BZE0 (RNA exonuclease 4 OS=Momordica charantia OX=3673 GN=LOC111006633 PE=3 SV=1)

HSP 1 Score: 324 bits (831), Expect = 9.77e-109
Identity = 164/227 (72.25%), Postives = 182/227 (80.18%), Query Frame = 0


Query: 2   KGLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENI 61
            GLLARLA+LGIRD S  +DGGR R +G VALACKYVGGG DGSLD+CAKVCLIDE+EN+
Sbjct: 106 SGLLARLANLGIRDASIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENV 165

Query: 62  VFYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVE 121
           +FYSYVKPIIPVTNYR+ETTGIRPEHLRDAMPLKQVQKKIQ+ILYNGGEKARVLVGH VE
Sbjct: 166 IFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILYNGGEKARVLVGHGVE 225

Query: 122 DDLKRLQIGYP-------------------------SIMIRFEIQNGVQDLY-DCVGGMR 181
           DDLKRLQIGYP                          + + F+IQNG+QD Y DCV  MR
Sbjct: 226 DDLKRLQIGYPIIRDTANYPPLMKTSKLCNSLKYLAQVYLGFDIQNGIQDPYEDCVASMR 285

Query: 182 LYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 201
           LYKRMRSQVH+IE +PMASDPQNKNNF  WR+NELERM+PE ML+IS
Sbjct: 286 LYKRMRSQVHKIEDYPMASDPQNKNNFGIWRQNELERMTPEHMLDIS 332

[Close]

BLAST of Cp4.1LG13g09020 vs. ExPASy TrEMBL
Match: A0A5D3BS62 (RNA exonuclease 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001070 PE=4 SV=1)

HSP 1 Score: 282 bits (722), Expect = 7.40e-93
Identity = 141/212 (66.51%), Postives = 171/212 (80.66%), Query Frame = 0


Query: 3   GLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENIV 62
           GLLAR A+LGIRDGST ID GRTRGSG +ALACKYVGGG DGSLD+CAKVCL+DE EN++
Sbjct: 73  GLLARFANLGIRDGSTIIDSGRTRGSGAIALACKYVGGGSDGSLDICAKVCLVDEGENVI 132

Query: 63  FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNGGE----------KA 122
           FYSYVKPIIPVTNYRYE TG+RPEHLRDAMPLKQVQKKIQ+ L NG +          KA
Sbjct: 133 FYSYVKPIIPVTNYRYEFTGVRPEHLRDAMPLKQVQKKIQEFLCNGEQMWKIRPGSTRKA 192

Query: 123 RVLVGHCVEDDLKRLQIGYPSIMIRFEIQNGVQD--LYDCVGGMRLYKRMRSQVHRIEHH 182
           R+LVGH +++ L  LQI YPSIMIR+ ++NG +     +CV  MRLY +M+SQVH+ E +
Sbjct: 193 RILVGHGLQEYLTSLQIDYPSIMIRYNMENGKKSEGYEECVATMRLYLKMKSQVHKREEY 252

Query: 183 PMASDPQNKNNFAAWRENELERMSPEQMLEIS 201
           P+ASDP NK NFA W++ ELE+M+P+Q+L+IS
Sbjct: 253 PLASDPPNKFNFAIWKQLELEKMTPQQLLQIS 284

[Close]

BLAST of Cp4.1LG13g09020 vs. TAIR 10
Match: AT5G40310.1 (Exonuclease family protein )

HSP 1 Score: 229.2 bits (583), Expect = 3.0e-60
Identity = 127/237 (53.59%), Postives = 159/237 (67.09%), Query Frame = 0


Query: 3   GLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENIV 62
           GL+ R+A+LG+R+ ST ID   +R    VAL+CK VGGG DGSLD+CA+VC+ DESEN+V
Sbjct: 100 GLMIRMAALGLRNNST-IDYTSSRSPRVVALSCKMVGGGSDGSLDLCARVCITDESENVV 159

Query: 63  FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNG---------GEKAR 122
           F++YVKP IPVTNYRYE TGIRPE+LRDAM LK  Q+K+Q+ L NG           KAR
Sbjct: 160 FHTYVKPTIPVTNYRYEMTGIRPENLRDAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKAR 219

Query: 123 VLVGHCVEDDLKRLQIGYPSIMIR---------------------------FEIQNGVQD 182
           +LVGH +++ L  LQ+ Y S MIR                           ++I  G+QD
Sbjct: 220 ILVGHGLDNHLDSLQLEYSSSMIRDTAEYPPLMKSSKLSNSLKYLTQAYLGYDIHVGIQD 279

Query: 183 LY-DCVGGMRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 202
            Y DCV  MRLY RMR Q HR E +P+ASD QN NNFAAWR+NELERMSPE++L++S
Sbjct: 280 PYEDCVATMRLYTRMRYQKHRAEAYPLASDTQNHNNFAAWRQNELERMSPEELLDLS 335

[Close]

BLAST of Cp4.1LG13g09020 vs. TAIR 10
Match: AT3G27970.1 (Exonuclease family protein )

HSP 1 Score: 227.6 bits (579), Expect = 8.7e-60
Identity = 124/237 (52.32%), Postives = 160/237 (67.51%), Query Frame = 0


Query: 3   GLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENIV 62
           GL  R+A+LG+RD    ID   +R    VAL+CK VGGG DGSLD+CA+VC+ DES+N++
Sbjct: 109 GLTTRMAALGLRD-KAMIDYTSSRSPRVVALSCKMVGGGSDGSLDLCARVCITDESDNVI 168

Query: 63  FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNG---------GEKAR 122
           F++YVKP + VT+YRYETTGIRPE+LRDAMPLKQVQ+KIQ+ L NG         G KAR
Sbjct: 169 FHTYVKPSMAVTSYRYETTGIRPENLRDAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKAR 228

Query: 123 VLVGHCVEDDLKRLQIGYPSIMIR---------------------------FEIQNGVQD 182
           +LVGH ++ DL RLQ+ YPS MIR                           +++  G+QD
Sbjct: 229 ILVGHGLDHDLDRLQLEYPSSMIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDVHFGIQD 288

Query: 183 LY-DCVGGMRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 202
            Y DCV  MRLY RMR Q H+IE +P+A+D QN++N  AWR++E ERMSP++ML IS
Sbjct: 289 PYEDCVATMRLYTRMRYQKHKIEAYPLAADAQNRSNQVAWRQSEAERMSPDEMLSIS 344

[Close]

BLAST of Cp4.1LG13g09020 vs. TAIR 10
Match: AT2G48100.1 (Exonuclease family protein )

HSP 1 Score: 132.9 bits (333), Expect = 2.9e-31
Identity = 77/220 (35.00%), Postives = 126/220 (57.27%), Query Frame = 0


Query: 14  RDGSTAIDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENIVFYSYVKPIIPV 73
           R+ S+++ G R +    +AL C+ VGGG DG++D CA VCL+D+ EN++F ++V+P++PV
Sbjct: 119 RNPSSSLAGSRLKA---MALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPV 178

Query: 74  TNYRYETTGIRPEHLRDAMPLKQVQKKIQDIL---YNGGEKARVLVGHCVEDDLKRLQIG 133
           T+YR+E TG+  E L+D MPL+ V++++   L    N G    +LVGH +  D+  L++ 
Sbjct: 179 TDYRHEITGLTKEDLKDGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLE 238

Query: 134 YPSIMIR---------------------------FEIQNGVQDLY-DCVGGMRLYKRMRS 193
           YPS ++R                           ++IQ G  ++Y DCV  MRLYKRMR 
Sbjct: 239 YPSHLLRDTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRD 298

Query: 194 QVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 202
           Q H      + S     N   + ++++LE+M+ E++ + S
Sbjct: 299 QEH------VCSGKAEGNGLNSRKQSDLEKMNAEELYQKS 329

[Close]

BLAST of Cp4.1LG13g09020 vs. TAIR 10
Match: AT2G48100.2 (Exonuclease family protein )

HSP 1 Score: 132.9 bits (333), Expect = 2.9e-31
Identity = 77/220 (35.00%), Postives = 126/220 (57.27%), Query Frame = 0


Query: 14  RDGSTAIDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENIVFYSYVKPIIPV 73
           R+ S+++ G R +    +AL C+ VGGG DG++D CA VCL+D+ EN++F ++V+P++PV
Sbjct: 119 RNPSSSLAGSRLKA---MALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPV 178

Query: 74  TNYRYETTGIRPEHLRDAMPLKQVQKKIQDIL---YNGGEKARVLVGHCVEDDLKRLQIG 133
           T+YR+E TG+  E L+D MPL+ V++++   L    N G    +LVGH +  D+  L++ 
Sbjct: 179 TDYRHEITGLTKEDLKDGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLE 238

Query: 134 YPSIMIR---------------------------FEIQNGVQDLY-DCVGGMRLYKRMRS 193
           YPS ++R                           ++IQ G  ++Y DCV  MRLYKRMR 
Sbjct: 239 YPSHLLRDTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRD 298

Query: 194 QVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 202
           Q H      + S     N   + ++++LE+M+ E++ + S
Sbjct: 299 QEH------VCSGKAEGNGLNSRKQSDLEKMNAEELYQKS 329

[Close]

BLAST of Cp4.1LG13g09020 vs. TAIR 10
Match: AT2G48100.3 (Exonuclease family protein )

HSP 1 Score: 132.9 bits (333), Expect = 2.9e-31
Identity = 77/220 (35.00%), Postives = 126/220 (57.27%), Query Frame = 0


Query: 14  RDGSTAIDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENIVFYSYVKPIIPV 73
           R+ S+++ G R +    +AL C+ VGGG DG++D CA VCL+D+ EN++F ++V+P++PV
Sbjct: 119 RNPSSSLAGSRLKA---MALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPV 178

Query: 74  TNYRYETTGIRPEHLRDAMPLKQVQKKIQDIL---YNGGEKARVLVGHCVEDDLKRLQIG 133
           T+YR+E TG+  E L+D MPL+ V++++   L    N G    +LVGH +  D+  L++ 
Sbjct: 179 TDYRHEITGLTKEDLKDGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLE 238

Query: 134 YPSIMIR---------------------------FEIQNGVQDLY-DCVGGMRLYKRMRS 193
           YPS ++R                           ++IQ G  ++Y DCV  MRLYKRMR 
Sbjct: 239 YPSHLLRDTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRD 298

Query: 194 QVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 202
           Q H      + S     N   + ++++LE+M+ E++ + S
Sbjct: 299 QEH------VCSGKAEGNGLNSRKQSDLEKMNAEELYQKS 329

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g09020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9GZR2	1.4e-14	38.06	RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2	[more]
Q6CMT3	1.6e-13	37.39	RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 707...	[more]
Q91560	1.6e-13	41.12	RNA exonuclease 4 OS=Xenopus laevis OX=8355 GN=rexo4 PE=2 SV=2	[more]
Q6PAQ4	3.5e-13	37.93	RNA exonuclease 4 OS=Mus musculus OX=10090 GN=Rexo4 PE=2 SV=2	[more]
Q08237	7.7e-13	32.23	RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=55...	[more]

BLAST of Cp4.1LG13g09020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578645.1	6.49e-136	96.02	hypothetical protein SDJN03_23093, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023551468.1	6.50e-135	87.67	RNA exonuclease 4-like [Cucurbita pepo subsp. pepo]	[more]
KAG7016187.1	2.61e-130	85.78	REX4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022938612.1	5.75e-129	84.21	RNA exonuclease 4-like [Cucurbita moschata]	[more]
XP_022993635.1	1.16e-128	83.77	RNA exonuclease 4-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG13g09020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEK0	2.79e-129	84.21	RNA exonuclease 4 OS=Cucurbita moschata OX=3662 GN=LOC111444794 PE=3 SV=1	[more]
A0A6J1JZ30	5.61e-129	83.77	RNA exonuclease 4 OS=Cucurbita maxima OX=3661 GN=LOC111489566 PE=3 SV=1	[more]
A0A6J1BXL4	8.85e-109	72.25	RNA exonuclease 4 OS=Momordica charantia OX=3673 GN=LOC111006633 PE=3 SV=1	[more]
A0A6J1BZE0	9.77e-109	72.25	RNA exonuclease 4 OS=Momordica charantia OX=3673 GN=LOC111006633 PE=3 SV=1	[more]
A0A5D3BS62	7.40e-93	66.51	RNA exonuclease 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00...	[more]

BLAST of Cp4.1LG13g09020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40310.1	3.0e-60	53.59	Exonuclease family protein	[more]
AT3G27970.1	8.7e-60	52.32	Exonuclease family protein	[more]
AT2G48100.1	2.9e-31	35.00	Exonuclease family protein	[more]
AT2G48100.2	2.9e-31	35.00	Exonuclease family protein	[more]
AT2G48100.3	2.9e-31	35.00	Exonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 29..165 e-value: 1.1E-4 score: 27.5
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 54..131 e-value: 1.2E-5 score: 25.9
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 28..162 e-value: 1.3E-22 score: 82.2
None	No IPR available	PANTHER	PTHR12801	RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED	coord: 2..136
None	No IPR available	PANTHER	PTHR12801	RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED	coord: 137..201
None	No IPR available	PANTHER	PTHR12801:SF122	OS02G0709000 PROTEIN	coord: 137..201 coord: 2..136
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 43..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g09020.1	Cp4.1LG13g09020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006364	rRNA processing
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003676	nucleic acid binding