Cp4.1LG13g08870 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g08870
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RNA ligase/cyclic nucleotide phosphodiesterase
Location	Cp4.1LG13: 7784680 .. 7785231 (+)
RNA-Seq Expression	Cp4.1LG13g08870
Synteny	Cp4.1LG13g08870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACAAGGCTTTGCGATCGAGCTCTATTTCGATCCGGCGCTTGAAAATCAAGTTCTCAAGGCTTGGAATGTACTGGCTCGCCGTCAAATTAGTACCCAACTCATTGAAATTGAATCACGCCCTCACATTACCCTCTTCTCCAGCCCTTTTCTTGAACCCACAAAAGTTGAATCCATCGTTAAAAATTTCGCTTCTAAACAGGAACCCTTGCCACTGTCCTTATCGTCAATTGGTAGCCTTCCCAGTGACAACAACGTTCTATTTCTTGGTCCAGCACCTTCGATTTCACTCCTCCAATTCCAGTCCCAATTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAATCGGGGAGGAATATCGTCCTGGCTCGTGGATTCCCCATTGCGCTGTTGCTCAGGAGGTGCCCAGGGCTCGAATGGCTGAGGCATTTTGTGTTCTAAGGGATTTGAAGCTACCAGTTTCCGGGTACGCAATTGATATTGGGTTGGTGGAATTTTCCCCTGTTCGGGAGCTGTTCTCTTTTGTTCTTGGCAACACTGTCGAAGCTTGA

mRNA sequence

ATGTCACAAGGCTTTGCGATCGAGCTCTATTTCGATCCGGCGCTTGAAAATCAAGTTCTCAAGGCTTGGAATGTACTGGCTCGCCGTCAAATTAGTACCCAACTCATTGAAATTGAATCACGCCCTCACATTACCCTCTTCTCCAGCCCTTTTCTTGAACCCACAAAAGTTGAATCCATCGTTAAAAATTTCGCTTCTAAACAGGAACCCTTGCCACTGTCCTTATCGTCAATTGGTAGCCTTCCCAGTGACAACAACGTTCTATTTCTTGGTCCAGCACCTTCGATTTCACTCCTCCAATTCCAGTCCCAATTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAATCGGGGAGGAATATCGTCCTGGCTCGTGGATTCCCCATTGCGCTGTTGCTCAGGAGGTGCCCAGGGCTCGAATGGCTGAGGCATTTTGTGTTCTAAGGGATTTGAAGCTACCAGTTTCCGGGTACGCAATTGATATTGGGTTGGTGGAATTTTCCCCTGTTCGGGAGCTGTTCTCTTTTGTTCTTGGCAACACTGTCGAAGCTTGA

Coding sequence (CDS)

ATGTCACAAGGCTTTGCGATCGAGCTCTATTTCGATCCGGCGCTTGAAAATCAAGTTCTCAAGGCTTGGAATGTACTGGCTCGCCGTCAAATTAGTACCCAACTCATTGAAATTGAATCACGCCCTCACATTACCCTCTTCTCCAGCCCTTTTCTTGAACCCACAAAAGTTGAATCCATCGTTAAAAATTTCGCTTCTAAACAGGAACCCTTGCCACTGTCCTTATCGTCAATTGGTAGCCTTCCCAGTGACAACAACGTTCTATTTCTTGGTCCAGCACCTTCGATTTCACTCCTCCAATTCCAGTCCCAATTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAATCGGGGAGGAATATCGTCCTGGCTCGTGGATTCCCCATTGCGCTGTTGCTCAGGAGGTGCCCAGGGCTCGAATGGCTGAGGCATTTTGTGTTCTAAGGGATTTGAAGCTACCAGTTTCCGGGTACGCAATTGATATTGGGTTGGTGGAATTTTCCCCTGTTCGGGAGCTGTTCTCTTTTGTTCTTGGCAACACTGTCGAAGCTTGA

Protein sequence

MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEYRPGSWIPHCAVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

Homology

[Close]

BLAST of Cp4.1LG13g08870 vs. NCBI nr
Match: XP_022993671.1 (uncharacterized protein LOC111489594 [Cucurbita maxima] >XP_023551692.1 uncharacterized protein LOC111809459 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 365 bits (937), Expect = 2.66e-127
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120
           VKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY
Sbjct: 61  VKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120

Query: 121 RPGSWIPHCAVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           RPGSWIPHCAVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RPGSWIPHCAVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 VEA 183
           VEA
Sbjct: 181 VEA 183

[Close]

BLAST of Cp4.1LG13g08870 vs. NCBI nr
Match: XP_022939795.1 (uncharacterized protein LOC111445566 [Cucurbita moschata] >KAG6578632.1 hypothetical protein SDJN03_23080, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 364 bits (934), Expect = 7.61e-127
Identity = 182/183 (99.45%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120
           VKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY
Sbjct: 61  VKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120

Query: 121 RPGSWIPHCAVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           RPGSWIPHC+VAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RPGSWIPHCSVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 VEA 183
           VEA
Sbjct: 181 VEA 183

[Close]

BLAST of Cp4.1LG13g08870 vs. NCBI nr
Match: XP_004142350.1 (uncharacterized protein LOC101208638 [Cucumis sativus] >XP_008458738.1 PREDICTED: uncharacterized protein LOC103498055 [Cucumis melo] >KAA0037479.1 RNA ligase/cyclic nucleotide phosphodiesterase [Cucumis melo var. makuwa] >KGN52392.1 hypothetical protein Csa_007965 [Cucumis sativus] >TYK01955.1 RNA ligase/cyclic nucleotide phosphodiesterase [Cucumis melo var. makuwa])

HSP 1 Score: 355 bits (912), Expect = 1.72e-123
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120
           VKNFASKQEPL LSLSSIGSLPSDNN+LFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY
Sbjct: 61  VKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120

Query: 121 RPGSWIPHCAVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R GSWIPHCAVAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 VEA 183
           VEA
Sbjct: 181 VEA 183

[Close]

BLAST of Cp4.1LG13g08870 vs. NCBI nr
Match: XP_038890563.1 (uncharacterized protein LOC120080080 [Benincasa hispida])

HSP 1 Score: 355 bits (912), Expect = 1.72e-123
Identity = 177/183 (96.72%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120
           VKNFASKQEPLPLSLSSIGSLPSD+N+LFLGPAPSISLLQFQSQLC+AMRKEGIEIGEEY
Sbjct: 61  VKNFASKQEPLPLSLSSIGSLPSDSNILFLGPAPSISLLQFQSQLCDAMRKEGIEIGEEY 120

Query: 121 RPGSWIPHCAVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R GSWIPHCAVAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 VEA 183
           VEA
Sbjct: 181 VEA 183

[Close]

BLAST of Cp4.1LG13g08870 vs. NCBI nr
Match: XP_022964210.1 (uncharacterized protein LOC111464296 [Cucurbita moschata] >KAG6602451.1 hypothetical protein SDJN03_07684, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033135.1 hypothetical protein SDJN02_07188, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 354 bits (909), Expect = 4.94e-123
Identity = 176/183 (96.17%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120
           VKNFASKQEPLPLSL+SIGSLP+DNN+LFLGPAPSISLLQFQSQLCEAMRKEGIE GEEY
Sbjct: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120

Query: 121 RPGSWIPHCAVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R GSWIPHCAVAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 VEA 183
           +EA
Sbjct: 181 LEA 183

[Close]

BLAST of Cp4.1LG13g08870 vs. ExPASy TrEMBL
Match: A0A6J1JWZ6 (uncharacterized protein LOC111489594 OS=Cucurbita maxima OX=3661 GN=LOC111489594 PE=4 SV=1)

HSP 1 Score: 365 bits (937), Expect = 1.29e-127
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120
           VKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY
Sbjct: 61  VKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120

Query: 121 RPGSWIPHCAVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           RPGSWIPHCAVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RPGSWIPHCAVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 VEA 183
           VEA
Sbjct: 181 VEA 183

[Close]

BLAST of Cp4.1LG13g08870 vs. ExPASy TrEMBL
Match: A0A6J1FNR7 (uncharacterized protein LOC111445566 OS=Cucurbita moschata OX=3662 GN=LOC111445566 PE=4 SV=1)

HSP 1 Score: 364 bits (934), Expect = 3.69e-127
Identity = 182/183 (99.45%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120
           VKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY
Sbjct: 61  VKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120

Query: 121 RPGSWIPHCAVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           RPGSWIPHC+VAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RPGSWIPHCSVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 VEA 183
           VEA
Sbjct: 181 VEA 183

[Close]

BLAST of Cp4.1LG13g08870 vs. ExPASy TrEMBL
Match: A0A5A7T7Y4 (RNA ligase/cyclic nucleotide phosphodiesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00470 PE=4 SV=1)

HSP 1 Score: 355 bits (912), Expect = 8.35e-124
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120
           VKNFASKQEPL LSLSSIGSLPSDNN+LFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY
Sbjct: 61  VKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120

Query: 121 RPGSWIPHCAVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R GSWIPHCAVAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 VEA 183
           VEA
Sbjct: 181 VEA 183

[Close]

BLAST of Cp4.1LG13g08870 vs. ExPASy TrEMBL
Match: A0A0A0KVB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630940 PE=4 SV=1)

HSP 1 Score: 355 bits (912), Expect = 8.35e-124
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120
           VKNFASKQEPL LSLSSIGSLPSDNN+LFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY
Sbjct: 61  VKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120

Query: 121 RPGSWIPHCAVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R GSWIPHCAVAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 VEA 183
           VEA
Sbjct: 181 VEA 183

[Close]

BLAST of Cp4.1LG13g08870 vs. ExPASy TrEMBL
Match: A0A1S3C834 (uncharacterized protein LOC103498055 OS=Cucumis melo OX=3656 GN=LOC103498055 PE=4 SV=1)

HSP 1 Score: 355 bits (912), Expect = 8.35e-124
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120
           VKNFASKQEPL LSLSSIGSLPSDNN+LFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY
Sbjct: 61  VKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120

Query: 121 RPGSWIPHCAVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R GSWIPHCAVAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 VEA 183
           VEA
Sbjct: 181 VEA 183

[Close]

BLAST of Cp4.1LG13g08870 vs. TAIR 10
Match: AT5G40190.1 (RNA ligase/cyclic nucleotide phosphodiesterase family protein )

HSP 1 Score: 277.3 bits (708), Expect = 8.7e-75
Identity = 130/183 (71.04%), Postives = 159/183 (86.89%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MS+G+AIELYFDPALENQVLKAWNV ARRQIST+LI  ESRPHITLFS+ F + T++ES+
Sbjct: 1   MSEGYAIELYFDPALENQVLKAWNVFARRQISTKLINTESRPHITLFSTSFFDSTRLESV 60

Query: 61  VKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120
           +KNF SKQEP+ +S S+IGS  SDNNVLFL P PS+SLLQ Q+QLC+ ++KE ++IGEEY
Sbjct: 61  IKNFVSKQEPISISFSTIGSFSSDNNVLFLSPTPSLSLLQLQTQLCDMLKKESVDIGEEY 120

Query: 121 RPGSWIPHCAVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R  SW+P C VA +VP++RMAEAF VLRDLKLPV+GY ++IGLVEFSPVRE+FSF LGNT
Sbjct: 121 RVDSWVPFCPVALDVPKSRMAEAFSVLRDLKLPVNGYGMEIGLVEFSPVREVFSFPLGNT 180

Query: 181 VEA 184
           +E+
Sbjct: 181 LES 183

[Close]

BLAST of Cp4.1LG13g08870 vs. TAIR 10
Match: AT3G28140.1 (RNA ligase/cyclic nucleotide phosphodiesterase family protein )

HSP 1 Score: 260.4 bits (664), Expect = 1.1e-69
Identity = 129/184 (70.11%), Postives = 154/184 (83.70%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-SPFLEPTKVES 60
           MSQG+AIELYFDPALENQVLKAWNV ARRQIST LI  ESRPHITLFS +  ++ TK+E 
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVFARRQISTYLINNESRPHITLFSTTSSIDSTKLEP 60

Query: 61  IVKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEE 120
           I+K+F+SKQEP+ LS SSIGS  SD+N LFL P PS+SL+Q Q QLCE ++KEG EIGEE
Sbjct: 61  IIKSFSSKQEPISLSFSSIGSFSSDDNALFLSPTPSLSLIQLQLQLCEVIKKEGFEIGEE 120

Query: 121 YRPGSWIPHCAVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGN 180
           YR  SW+P C+VA +VP++R++E F VLRDLKL V GYA+DIGLVEFSPVRE+FSF LGN
Sbjct: 121 YRVDSWVPFCSVAVDVPKSRISEGFLVLRDLKLLVYGYAMDIGLVEFSPVREVFSFGLGN 180

Query: 181 TVEA 184
            +E+
Sbjct: 181 NLES 184

[Close]

BLAST of Cp4.1LG13g08870 vs. TAIR 10
Match: AT3G28140.2 (RNA ligase/cyclic nucleotide phosphodiesterase family protein )

HSP 1 Score: 204.9 bits (520), Expect = 5.5e-53
Identity = 101/153 (66.01%), Postives = 122/153 (79.74%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-SPFLEPTKVES 60
           MSQG+AIELYFDPALENQVLKAWNV ARRQIST LI  ESRPHITLFS +  ++ TK+E 
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVFARRQISTYLINNESRPHITLFSTTSSIDSTKLEP 60

Query: 61  IVKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEE 120
           I+K+F+SKQEP+ LS SSIGS  SD+N LFL P PS+SL+Q Q QLCE ++KEG EIGEE
Sbjct: 61  IIKSFSSKQEPISLSFSSIGSFSSDDNALFLSPTPSLSLIQLQLQLCEVIKKEGFEIGEE 120

Query: 121 YRPGSWIPHCAVAQEVPRARMAEAFCVLRDLKL 153
           YR  SW+P C+VA +VP++R++E F V     L
Sbjct: 121 YRVDSWVPFCSVAVDVPKSRISEGFLVTSTFSL 153

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g08870 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG13g08870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022993671.1	2.66e-127	100.00	uncharacterized protein LOC111489594 [Cucurbita maxima] >XP_023551692.1 uncharac...	[more]
XP_022939795.1	7.61e-127	99.45	uncharacterized protein LOC111445566 [Cucurbita moschata] >KAG6578632.1 hypothet...	[more]
XP_004142350.1	1.72e-123	97.27	uncharacterized protein LOC101208638 [Cucumis sativus] >XP_008458738.1 PREDICTED...	[more]
XP_038890563.1	1.72e-123	96.72	uncharacterized protein LOC120080080 [Benincasa hispida]	[more]
XP_022964210.1	4.94e-123	96.17	uncharacterized protein LOC111464296 [Cucurbita moschata] >KAG6602451.1 hypothet...	[more]

BLAST of Cp4.1LG13g08870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JWZ6	1.29e-127	100.00	uncharacterized protein LOC111489594 OS=Cucurbita maxima OX=3661 GN=LOC111489594...	[more]
A0A6J1FNR7	3.69e-127	99.45	uncharacterized protein LOC111445566 OS=Cucurbita moschata OX=3662 GN=LOC1114455...	[more]
A0A5A7T7Y4	8.35e-124	97.27	RNA ligase/cyclic nucleotide phosphodiesterase OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0KVB2	8.35e-124	97.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630940 PE=4 SV=1	[more]
A0A1S3C834	8.35e-124	97.27	uncharacterized protein LOC103498055 OS=Cucumis melo OX=3656 GN=LOC103498055 PE=...	[more]

BLAST of Cp4.1LG13g08870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40190.1	8.7e-75	71.04	RNA ligase/cyclic nucleotide phosphodiesterase family protein	[more]
AT3G28140.1	1.1e-69	70.11	RNA ligase/cyclic nucleotide phosphodiesterase family protein	[more]
AT3G28140.2	5.5e-53	66.01	RNA ligase/cyclic nucleotide phosphodiesterase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.1140.10	Cyclic phosphodiesterase	coord: 5..178 e-value: 2.0E-17 score: 65.4
None	No IPR available	PFAM	PF13563	2_5_RNA_ligase2	coord: 41..155 e-value: 1.7E-12 score: 47.5
None	No IPR available	PANTHER	PTHR36039	FAMILY NOT NAMED	coord: 1..182
IPR009097	Cyclic phosphodiesterase	SUPERFAMILY	55144	LigT-like	coord: 5..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g08870.1	Cp4.1LG13g08870.1	mRNA