Cp4.1LG13g07270 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g07270
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	GATA type zinc finger transcription factor family protein
Location	Cp4.1LG13: 8720474 .. 8723408 (+)
RNA-Seq Expression	Cp4.1LG13g07270
Synteny	Cp4.1LG13g07270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATGGGTATGGCGTCTGGAGGAGGCGCGTTGTAACAGCTAACTCGGTGGTTGAAGAAGCCAAATTAATGGTGGGTCACAATTGCTGCCCACCTGATCTTTATCTTTTACGTTCTTTTTCTTTTCCTTTTAATTATTTCTAATGCGTTGTAATCACACACATTAAACAATAATTCCTTCTTAATTTTTCTCTTTATTGTTATTGTAACAATTCTTTATCCCAAATTCCAACATAAAACTCCCACCGCGCTGCGCCAAAACGGGCTCCATTCCAATCCCTCTCCTTATTCTTCACCTCTTCCCTTCTCCCCCCTCGAACATCTCTGACGATTCCGCTTTGTTTGGTTTACAGATCCACCATTTTCCCAGTCTCTAATCTCAGGTATGTGATTTTAACTCGATTTAGTTCACATTTCCCAGCTCCCAACTCCCAGATCACGATCAATTTTTCGTGTTTAAGATCTTTGTTGTTAAAACAGTCGTGGGGTTTTGGGTTTATGTTTGTTCGTTGCAATTTTACAATCTAAACTTGAATGGGTTTGGGAGTTTGAAGTTAATCTCTCTCACTCGAAATACTTTTGCATTTTCTTCTACGCCAAACAGAATTTGATTCGAGGAGCGTCTACGTTCAGTCCGATTGTGGTCTAACAAGACAGAGAAGGGAAGTTAGCTTGGAGAGTTGGGGATTGGTTGTCATCTTGGTCGGTTGGGTGAAAAAGGCTCAGATCTAACTCCAAGGGCTTAGCTATGTCTTTCATTGGCACCCAACAAAAGTGCAAGGCCTGCGAGAAGACTGTGTACCCTGTGGAGCAGCTCTCTGTTGATGGAGTTTCCTACCACAAATCTTGCTTCAAATGCACCCACTGCAAAGGGACTCTAAAGGTATTGCACTGTGTGTTTTCAGCATAATGGCGTTTAACAGTGAGTAGGAGCTAAAATATGACCACTCCTGATCTTGATTTGAACAATAACAAGAGATTTTACTGTTTATAACCCTGGTCTCTGCTTGCCTTCAGCTGAGCAATTATTCATCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGAGTGGCAACTTCAACAAGAACTTTCAATCACGTACGTTTTGATTTTGTTTCAGATAACTTTTTGTTTCACTTCCTAGAAATTTTACTTTCGCATGTTTAATTGTGTTTGAGTTTTACTCTCTACAGCTGCCAAGTCAGCTGAGAAGTTAACTCCAGAGCTGGTAATTTCCTGTCGTAATCAATTGTAATTTTTTGCTTCAAGGAGATAAAATTATGCTGATTCTTGTAAGCACTTTACTGGTTTCAGACAAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGCGGTAAAACTGTTTATCCACTAGAGAAGGTAACTCACCTACTGACATCTCCATAGATTATTCATTATTGGAGCGTTCAATCTACGATGCATTAATGCATGAATGAACATCTGTTGAAGCTGGCCAATTAGTTTGGGTACGATGCTATTATATTAATAAGATTTGCTATAGAACTATACTCGTATTCTTTCAAAAGTTGCTATACTACCTTGACCGTTCAGAAACGTTTCAAAGCTACTATTGGTGTAGAGAGTTATTGAAATATTGGATGAAAATTAGGACTTGTTGCGTCTATGTACGTAAGCCCCTTCTCTGTTACTTCCTTCGGGTCGACCTTCCTTTGAATGGCTGATAGGATTTCAAGCGTACCCATTTTGGGGTTGTCTTGGTCTTCCCTTTTGTCTGTCGCTGGCTCGACTCGTGTCATTGCTCTCTTGTATGGACACTTGGAGTGCACTGAGGGATGCTCGATGAGGTTAGTAGAACAGTTTGTGGGGGCTTTTACACAACAAGCACTGTAAAGGCGTCATCGGATAGTTCTTTTGAGGGTAGGATCCTCGAGATGACCCAACGTTGGTATTCTTAGGAGGTCTATCCGTTCCCCCATTTGGTCTGTCATTACTTTCGTTTGGCCTACTGGGACCTTCATTCTGTTGACCTGACGGCTTGTACGATTTGCCCCCAACACTGGAGTTTATGTATTCTTCCTTTTAGAAACGTTTCAAAACCACCATTTCAGTTCACTGTCATTCATTCCAAGTCCAAATTTTCAACCAAATTTCCCGAAGGGTGAAACTTTTGAAAGAGTACGAGTTCTTTTTAAACGATCGGTTAACTTTGGGAGTATTTTGATCAACTCCATGGATATTGGTTTACAAATTTGAGAATTGTCCGAAACCAAACCAAGGTTTATAGAGTATGATATGAATGTGTTATTACAAATACTTGCAGGTAACAGTGGAAAGCCAATCGTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTTCCATATCCCCATCAAACTATGCAGCGCTAGAGGGTATTCTATATTGCAAACACCATTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTATAACCACCTCATCAAGTCTGCATCCATGAAGCGTCCCGCTGCCTCCGTTCCCGAAGCTTGAAGTTCTTATTATCGCATCGTCATTCACGGTTTTGGACCTAACTCTCTGTTTACCTGAATGTGTTTGACTTTAAAAACTTATGGGTTTTGAGATGGGAAAAGGAAAAATATATATGTTAACCATCATTTCGGCTCGGTTCGTGTGTTTATTTGGACAAACCGTTGAATTCGATCGATATTTGAGGTGCAAACCTTATATATGGTTTCCAGGATTTGCATATTTTGAGAATTATGCGTCGTGTTCTCGTGCATAAACAAGCATTCTGGAATTATTATCTTTTCAATTTGATATTACTATGAAAACCAACATATGATCATTATATCAAAGAAAACCTACGAGAGAATACATTAGTCTTCAATTTTTTTTAAAAAAAAAAAAAAAAA

mRNA sequence

CATGGGTATGGCGTCTGGAGGAGGCGCGTTGTAACAGCTAACTCGGTGGTTGAAGAAGCCAAATTAATGATCCACCATTTTCCCAGTCTCTAATCTCAGAATTTGATTCGAGGAGCGTCTACGTTCAGTCCGATTGTGGTCTAACAAGACAGAGAAGGGAAGTTAGCTTGGAGAGTTGGGGATTGGTTGTCATCTTGGTCGGTTGGGTGAAAAAGGCTCAGATCTAACTCCAAGGGCTTAGCTATGTCTTTCATTGGCACCCAACAAAAGTGCAAGGCCTGCGAGAAGACTGTGTACCCTGTGGAGCAGCTCTCTGTTGATGGAGTTTCCTACCACAAATCTTGCTTCAAATGCACCCACTGCAAAGGGACTCTAAAGCTGAGCAATTATTCATCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGAGTGGCAACTTCAACAAGAACTTTCAATCACCTGCCAAGTCAGCTGAGAAGTTAACTCCAGAGCTGACAAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGCGGTAAAACTGTTTATCCACTAGAGAAGGTAACAGTGGAAAGCCAATCGTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTTCCATATCCCCATCAAACTATGCAGCGCTAGAGGGTATTCTATATTGCAAACACCATTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTATAACCACCTCATCAAGTCTGCATCCATGAAGCGTCCCGCTGCCTCCGTTCCCGAAGCTTGAAGTTCTTATTATCGCATCGTCATTCACGGTTTTGGACCTAACTCTCTGTTTACCTGAATGTGTTTGACTTTAAAAACTTATGGGTTTTGAGATGGGAAAAGGAAAAATATATATGTTAACCATCATTTCGGCTCGGTTCGTGTGTTTATTTGGACAAACCGTTGAATTCGATCGATATTTGAGGTGCAAACCTTATATATGGTTTCCAGGATTTGCATATTTTGAGAATTATGCGTCGTGTTCTCGTGCATAAACAAGCATTCTGGAATTATTATCTTTTCAATTTGATATTACTATGAAAACCAACATATGATCATTATATCAAAGAAAACCTACGAGAGAATACATTAGTCTTCAATTTTTTTTAAAAAAAAAAAAAAAAA

Coding sequence (CDS)

ATGTCTTTCATTGGCACCCAACAAAAGTGCAAGGCCTGCGAGAAGACTGTGTACCCTGTGGAGCAGCTCTCTGTTGATGGAGTTTCCTACCACAAATCTTGCTTCAAATGCACCCACTGCAAAGGGACTCTAAAGCTGAGCAATTATTCATCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGAGTGGCAACTTCAACAAGAACTTTCAATCACCTGCCAAGTCAGCTGAGAAGTTAACTCCAGAGCTGACAAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGCGGTAAAACTGTTTATCCACTAGAGAAGGTAACAGTGGAAAGCCAATCGTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTTCCATATCCCCATCAAACTATGCAGCGCTAGAGGGTATTCTATATTGCAAACACCATTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTATAACCACCTCATCAAGTCTGCATCCATGAAGCGTCCCGCTGCCTCCGTTCCCGAAGCTTGA

Protein sequence

MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMKRPAASVPEA

Homology

[Close]

BLAST of Cp4.1LG13g07270 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 1.7e-94
Identity = 165/199 (82.91%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LS DGV YHKSCFKCTHCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESG+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 R----------PAASVPEA 190
           R          PAASVPE+
Sbjct: 181 RSAAAAVAAGVPAASVPES 199

[Close]

BLAST of Cp4.1LG13g07270 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 2.5e-90
Identity = 155/190 (81.58%), Postives = 171/190 (90.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKC+ACEKTVYPVE LS DG+SYHK+CFKC+HCK  L+LSNYSSMEGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKS-AEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLE 120
           HFEQLFKESG+F+KNFQSPAK   +K TPEL R+PS+ AGMFSGTQDKCATC KTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASM 180
           KVTVESQ YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KRPAASVPEA 190
           KR  A+   A
Sbjct: 181 KRATAAATAA 190

[Close]

BLAST of Cp4.1LG13g07270 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 3.1e-72
Identity = 124/185 (67.03%), Postives = 154/185 (83.24%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KCKAC+KTVY ++ L+++G +YHKSCF+CTHCKGTL +SNYSSM+GVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGN++KNFQ  A   EK    LTR+PSK +  FSGTQDKCATC KTVYPLEK
Sbjct: 61  HFEQLFKESGNYSKNFQ--AGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VT+E +SYHK+CF+C+H GC ++ S+YA+L G+LYCK HF+QLF EKGSYNH+ ++A+  
Sbjct: 121 VTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANH 180

Query: 181 RPAAS 186
           R +AS
Sbjct: 181 RRSAS 183

[Close]

BLAST of Cp4.1LG13g07270 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.0e-70
Identity = 116/184 (63.04%), Postives = 155/184 (84.24%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KC  C+KTVY V+ LS++G+ YHKSCF+CTHCKGTL++SNYSSM+GVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGNF+KNFQ P K+ +   PELTR+PSK + +F GTQDKCA C KTVYPLEK
Sbjct: 61  HFEQLFKESGNFSKNFQ-PGKTEK---PELTRTPSKISSIFCGTQDKCAACEKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           + +E + +HK+CF+C+HGGC+++ S+YA+L+ +LYC+HHF+QLF EKG+Y H++++A+ +
Sbjct: 121 IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHR 180

Query: 181 RPAA 185
           R A+
Sbjct: 181 RTAS 180

[Close]

BLAST of Cp4.1LG13g07270 vs. ExPASy Swiss-Prot
Match: Q7F9R9 (LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 7.9e-68
Identity = 121/189 (64.02%), Postives = 146/189 (77.25%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQ KC AC+KTV+ ++ L+ DGV YHK+CFKC+HCKG L + +YSSM+GVLYCK 
Sbjct: 1   MSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+F+K F    +S +K   EL R+PSK    FSGTQDKCA C KTVYPLEK
Sbjct: 61  HFEQLFKETGSFSKKFAPGCRSTDK---ELARAPSKICSAFSGTQDKCAACQKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHL-IKSASM 180
           +T+E +SYHKSCFKCSHGGC ++ S+YAAL G+LYCK HF QLF EKGSYNH+  KS S 
Sbjct: 121 LTLEGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLFMEKGSYNHMKKKSESQ 180

Query: 181 KRPAASVPE 189
           +     VPE
Sbjct: 181 EVLPEVVPE 186

[Close]

BLAST of Cp4.1LG13g07270 vs. NCBI nr
Match: XP_023550254.1 (LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo])

HSP 1 Score: 398 bits (1023), Expect = 3.22e-140
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 189
           RPAASVPEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of Cp4.1LG13g07270 vs. NCBI nr
Match: XP_022939310.1 (LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939311.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939312.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022993072.1 LIM domain-containing protein WLIM2b [Cucurbita maxima] >XP_022993073.1 LIM domain-containing protein WLIM2b [Cucurbita maxima] >KAG7015999.1 LIM domain-containing protein WLIM2b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 397 bits (1019), Expect = 1.31e-139
Identity = 188/189 (99.47%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 189
           RPAASVPEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of Cp4.1LG13g07270 vs. NCBI nr
Match: KAG6578438.1 (LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 395 bits (1016), Expect = 3.76e-139
Identity = 187/189 (98.94%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCK+CEKTVYPVEQLSVDGVSYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKSCEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 189
           RPAASVPEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of Cp4.1LG13g07270 vs. NCBI nr
Match: XP_004138434.1 (LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_008441430.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_008441431.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_011656401.1 LIM domain-containing protein WLIM2b [Cucumis sativus] >KGN45769.1 hypothetical protein Csa_005194 [Cucumis sativus])

HSP 1 Score: 387 bits (994), Expect = 8.52e-136
Identity = 182/189 (96.30%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC++SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 189
           R AA VPEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of Cp4.1LG13g07270 vs. NCBI nr
Match: XP_038884117.1 (LIM domain-containing protein WLIM2b [Benincasa hispida] >XP_038884118.1 LIM domain-containing protein WLIM2b [Benincasa hispida])

HSP 1 Score: 385 bits (990), Expect = 3.47e-135
Identity = 181/189 (95.77%), Postives = 185/189 (97.88%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVYPVEQLS DG+SYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYPVEQLSADGISYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC+ISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 189
           R AA VPEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of Cp4.1LG13g07270 vs. ExPASy TrEMBL
Match: A0A6J1K140 (LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111489197 PE=4 SV=1)

HSP 1 Score: 397 bits (1019), Expect = 6.35e-140
Identity = 188/189 (99.47%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 189
           RPAASVPEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of Cp4.1LG13g07270 vs. ExPASy TrEMBL
Match: A0A6J1FFI9 (LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC111445264 PE=4 SV=1)

HSP 1 Score: 397 bits (1019), Expect = 6.35e-140
Identity = 188/189 (99.47%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 189
           RPAASVPEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of Cp4.1LG13g07270 vs. ExPASy TrEMBL
Match: A0A1S3B3E4 (LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=4 SV=1)

HSP 1 Score: 387 bits (994), Expect = 4.13e-136
Identity = 182/189 (96.30%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC++SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 189
           R AA VPEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of Cp4.1LG13g07270 vs. ExPASy TrEMBL
Match: A0A0A0KAA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1)

HSP 1 Score: 387 bits (994), Expect = 4.13e-136
Identity = 182/189 (96.30%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC++SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 189
           R AA VPEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of Cp4.1LG13g07270 vs. ExPASy TrEMBL
Match: A0A2R6RWU9 (LIM domain-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc01597 PE=4 SV=1)

HSP 1 Score: 379 bits (972), Expect = 9.35e-133
Identity = 176/189 (93.12%), Postives = 184/189 (97.35%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVE LS DGVSYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVELLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSAEKLTPELTRSPSKAA MFSGTQ+KCATCGKT YPLEK
Sbjct: 61  HFEQLFKETGSFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGCSI+PSNYAALEGILYCKHHFSQLFKEKGSYNHL+KSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSITPSNYAALEGILYCKHHFSQLFKEKGSYNHLLKSASMK 180

Query: 181 RPAASVPEA 189
           RP AS+PEA
Sbjct: 181 RPIASIPEA 189

[Close]

BLAST of Cp4.1LG13g07270 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-95
Identity = 165/199 (82.91%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LS DGV YHKSCFKCTHCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESG+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 R----------PAASVPEA 190
           R          PAASVPE+
Sbjct: 181 RSAAAAVAAGVPAASVPES 199

[Close]

BLAST of Cp4.1LG13g07270 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-95
Identity = 165/199 (82.91%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LS DGV YHKSCFKCTHCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESG+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 R----------PAASVPEA 190
           R          PAASVPE+
Sbjct: 181 RSAAAAVAAGVPAASVPES 199

[Close]

BLAST of Cp4.1LG13g07270 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-95
Identity = 165/199 (82.91%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LS DGV YHKSCFKCTHCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESG+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 R----------PAASVPEA 190
           R          PAASVPE+
Sbjct: 181 RSAAAAVAAGVPAASVPES 199

[Close]

BLAST of Cp4.1LG13g07270 vs. TAIR 10
Match: AT3G55770.4 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-95
Identity = 165/199 (82.91%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LS DGV YHKSCFKCTHCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESG+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 R----------PAASVPEA 190
           R          PAASVPE+
Sbjct: 181 RSAAAAVAAGVPAASVPES 199

[Close]

BLAST of Cp4.1LG13g07270 vs. TAIR 10
Match: AT3G55770.5 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-95
Identity = 165/199 (82.91%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LS DGV YHKSCFKCTHCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESG+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 R----------PAASVPEA 190
           R          PAASVPE+
Sbjct: 181 RSAAAAVAAGVPAASVPES 199

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g07270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M047	1.7e-94	82.91	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
O04193	2.5e-90	81.58	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
O80839	3.1e-72	67.03	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]
Q1ECF5	1.0e-70	63.04	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]
Q7F9R9	7.9e-68	64.02	LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of Cp4.1LG13g07270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023550254.1	3.22e-140	100.00	LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo]	[more]
XP_022939310.1	1.31e-139	99.47	LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939311.1 LIM do...	[more]
KAG6578438.1	3.76e-139	98.94	LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_004138434.1	8.52e-136	96.30	LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_008441430.1 PREDICTED...	[more]
XP_038884117.1	3.47e-135	95.77	LIM domain-containing protein WLIM2b [Benincasa hispida] >XP_038884118.1 LIM dom...	[more]

BLAST of Cp4.1LG13g07270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K140	6.35e-140	99.47	LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111489197...	[more]
A0A6J1FFI9	6.35e-140	99.47	LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC1114452...	[more]
A0A1S3B3E4	4.13e-136	96.30	LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=...	[more]
A0A0A0KAA4	4.13e-136	96.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1	[more]
A0A2R6RWU9	9.35e-133	93.12	LIM domain-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 G...	[more]

BLAST of Cp4.1LG13g07270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55770.1	1.2e-95	82.91	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	1.2e-95	82.91	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	1.2e-95	82.91	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.4	1.2e-95	82.91	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.5	1.2e-95	82.91	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 107..159 e-value: 1.3E-13 score: 61.2 coord: 9..61 e-value: 1.1E-12 score: 58.2
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 108..163 e-value: 5.0E-11 score: 42.7 coord: 10..65 e-value: 8.2E-12 score: 45.2
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.404699
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 106..166 score: 12.5731
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 102..172 e-value: 3.4E-20 score: 74.0 coord: 4..74 e-value: 9.2E-21 score: 75.8
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..189
None	No IPR available	PANTHER	PTHR24206:SF94	LIM DOMAIN-CONTAINING PROTEIN WLIM2B	coord: 1..189
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 108..168 e-value: 4.32335E-37 score: 121.038
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 1.73295E-41 score: 132.203
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..35
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 100..133
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 134..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g07270.1	Cp4.1LG13g07270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding