Cp4.1LG13g05500 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG13g05500
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionGRIP and coiled-coil domain-containing protein 1
LocationCp4.1LG13: 5383281 .. 5386653 (-)
RNA-Seq ExpressionCp4.1LG13g05500
SyntenyCp4.1LG13g05500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATGAGAGAATATTCAAATCGAAATCTGAATAAAATATTATAATCAATTCGGTCAGTCTTTAACACGTTCAATTGAGAGAAGAAGAACTTCTGAATTTGCTTCGAATTATCTGTTGATCGTTGAAGAGAAATCGGTGTTCGTCAAAAGCGGCAGTCGTCGTCGGTGGCGATGGCTCGGGCAGGTGGTCGGAGCAGGAGTGTGAACGAACTGTCGGGGGGAGGGTTTCTTAAGGCGGTTTTCAGATTCTTGAAGATGGCGGAGTTTGAGATCCTTTTCGTTCTCTTCTTCATCGTGGCTTTTATCGTCTTTAAAGATCTCGTAAGTCTCTCTGTTATTGGTCTGTTGTTATTCCTGCTCTGTCTTGAGGCATATTATCTTAATTGGATTGGATCCGCTCTGTCGTTGTTTTGTAATCTTGTTTTCAGAAATTTGGTGTATGTTAGTGTACTTTGATCCTCGAATTAGATTTGATCGAGCAGCTGATGATCTTTTCTTTTCTTTCCTCGCCGTTGTATATAGTCACTGGTTTAGACTAAACTTATGATAAGATTAAAAATTTTCGCTAATTTTTGAATGTAAAATACAGATTTGTGGAAACTTCTGTCTTTTTAGTGTACAAAATTTGGCTAGGTAGAAGGTAGAAATTATCTTTGAAAGTAGATAAAACAAGGAAGAAATTTATGCAAGTATGATTGGTAGGCAAAGGAAAAAGTTATCCTTTAGGCTCATAGATATTCCAACAAAAATTCCATTTAACAAGCCGTTTAACAAGGAGTTAAAGAAGTTAAAACAATTCCTGGATATGATTGTCCTCAACAGGCAATGGTTGATTTGACTACTGCCGTTGGCTTGTGAGCTTTGCTACTCGGACCGATGAATGTTTAGGATTGCAAGCTAAGCTTTTGAAATGGCAGAACTTGCAGTTGTTGCAAGCTCACTTTAGCCACGCTGATGGTTATAAATATTCCTGCCTATTTTCTTCTCGTTGTGACTAAGAACTTGGAGAAGTCTATTACAAATTTTGCACAGAAAGCTATCACTTGTGATTGTGATAGCCATCACTGCATGAGATGGAATGAGACAAATCACTAACTCTATATATATTGTTTTCTCAAAATTTCTTTGCTGACACAAGGAAAATCACTCCAACATCAGTATTCATTTGCTTGTCAGTTTTCAAAGATTTAAACATTAGGTCATATGGTTGCTTTTGCAAGTGAATACTCATCTTTTCCTTTCTGACAAATAAATAAATAACTTTTGTACTTCATAGGAGATTTGGAGTATGTATGGCGTTGTTTCATAGGAGATTTGCCCAGTTATTGCTTCCTCCTCCGATTTTGATGTTGATTTTTTGGTAGTTGTGGTAGTTATGGATATGGATGCCCAATGAAGGGTATGTTCTAGTACCCTGTAGAAAAAGATGACTGGAGAGAGAGACATTTTAGAGAGAAGCGATTTATGTAATCTTGCTTGCTATCTGGTGAAAAATCTAAGCCTAAAATATGCCAAGGATTCACAATATGGAAGGAGAAGATTTGCACTTGAGGAAATAAAATACGTTTGATGAATAAGAGTGCAAGCCCTGTATTTGGTCTTTTCCAACGGTAACTGCATAAAGGGAAATGGTCCAGATTTCTTTTTATAACATGGAACCCTATTTTCTAAGAAAATTCATGGGTCCAGAATGAAAGATTGGATAATTTTGAAAACATATAGGAACTCTTCTCTCTTCTTCACTGCAAGACCAGAGGACATTGCTGATGGAACATTCATGCCATTCAACAGTATTATTTCTCTCCTTCTTTCTTTCCCTTTTTTTAGAATCACTATTTCATAAGATTACTGTTGTGGGTAGCATCATTTGTTTCTTTTCGAGCTCGATTAGAAAGCGAAATGTCCTTAGAAGGAAAATTATTTATGTGATCGTACTGAAATCAGTTATCAGGATTCCGAAATTGCTTCTCACCTTAGTTCTATTCAGCTGGTATAAATTTAGTTGTTTGTTTTCAGTTGAGAGGTGTAGTCAGTTTGAGATTGCCAAAGATACATGATATTCATATGGCAATGGAAAGAATCTTCATATCTTGGATTTTCTTGGATAAAATTTTTAGACAATTCTTATGTTGCTCGCTGCTTAGGCATCAACATTAAAGATTCATTTCATCGTGTATGGGTCTTGTGAGCTCATTCTCCATTTTCAATAACAATTCTCAGATAGATTCAGTGTTCTTTATTCATTTTTGTGCTGAATTTAGTTGTGAACCGTGGCATTATTTATTTATGTTCTCTCTGAAGCAGAGTAGAGTCAAAGTAGGGTCATAAATGAACGTCTATTTCAAAACACTTTTGTAATTATTTTCTTGGTCTTATTGTTTTTTATTGGAGCTCGTTTTAATTGTTAAGGTGTTAGAGTTTGTTTTGTGCTTTGCCTTTTTGTATGCCACTTTTGTTATCTCTTCTGAATTAAAGCTGAGTCAAATTGTATCAAATCAAACTTCAAAGGATGTAAATTTATCAATTTAAATCAAAAACTTTCATAAATAGGTCAATTTAGTATCTTCATTACATATTTTTTAAACGGTTAATACACAACTTTCACATATTTTTTTTTTAAATGTGAGAATTAATGTAAATTAGATTGAAGTGTGCGACTCGAACGGATTGTAGCAGTTTTATTTATTTATTTGTTTTAAATTTGTGTGGTTTTCATTGTCTTCTATTTTTCTATACTTATTTAGTCTGTGGAATCTTTGGAGAAATAATTTTGTTTAGGCGATTTTGAGTTTGTTTTAAATGAAATCAAGTGAAAATAGCTATAAATCATTAACGAACGGTATAAATTGATTCATTTATGAGAGATTAAGGTTTGAATTTATACAATTACTAGTTTAGTTTGTAGCTTTAATACTCAACTCTCAATGCATAAATTGATTTTTGTCCAAATCTTTATGTTGAAACTACTCAACAAAAATCTAGCATAACAGATCGTGAACATTCTTATTTTTTTGATCGTCTTCCTTTATTGATGTGCAAATGTTAAGAGATTCTAATCGTGTGGAATTCAAATGCAGACATCAAGGCCAGAGTACAATCAGATCCTTGTAAAGAAGCCTGAGGGTTTTGATATGTGGCCATTCCAGTAATTTCTTGACCTTGCATTCTTGTAATCTGAGATATTCACTCCACTTTCCAACTTTGCATCTTTTTATGATGCTGTAAAAATGTTCGTCGATGTTGACGTTTTTATTGATACTGTCGTAAGTTCGAAAGATTGTGAAGTAAATATTGGTTTTAGAAATGATTTGGAATTGTCAAAAAAGAAAAAGTATCAAGGAAAAGCCGAATGTTGAACGATATAGTGAGGATTCG

mRNA sequence

TATGAGAGAATATTCAAATCGAAATCTGAATAAAATATTATAATCAATTCGGTCAGTCTTTAACACGTTCAATTGAGAGAAGAAGAACTTCTGAATTTGCTTCGAATTATCTGTTGATCGTTGAAGAGAAATCGGTGTTCGTCAAAAGCGGCAGTCGTCGTCGGTGGCGATGGCTCGGGCAGGTGGTCGGAGCAGGAGTGTGAACGAACTGTCGGGGGGAGGGTTTCTTAAGGCGGTTTTCAGATTCTTGAAGATGGCGGAGTTTGAGATCCTTTTCGTTCTCTTCTTCATCGTGGCTTTTATCGTCTTTAAAGATCTCACATCAAGGCCAGAGTACAATCAGATCCTTGTAAAGAAGCCTGAGGGTTTTGATATGTGGCCATTCCAGTAATTTCTTGACCTTGCATTCTTGTAATCTGAGATATTCACTCCACTTTCCAACTTTGCATCTTTTTATGATGCTGTAAAAATGTTCGTCGATGTTGACGTTTTTATTGATACTGTCGTAAGTTCGAAAGATTGTGAAGTAAATATTGGTTTTAGAAATGATTTGGAATTGTCAAAAAAGAAAAAGTATCAAGGAAAAGCCGAATGTTGAACGATATAGTGAGGATTCG

Coding sequence (CDS)

ATGGCTCGGGCAGGTGGTCGGAGCAGGAGTGTGAACGAACTGTCGGGGGGAGGGTTTCTTAAGGCGGTTTTCAGATTCTTGAAGATGGCGGAGTTTGAGATCCTTTTCGTTCTCTTCTTCATCGTGGCTTTTATCGTCTTTAAAGATCTCACATCAAGGCCAGAGTACAATCAGATCCTTGTAAAGAAGCCTGAGGGTTTTGATATGTGGCCATTCCAGTAA

Protein sequence

MARAGGRSRSVNELSGGGFLKAVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQILVKKPEGFDMWPFQ
Homology
[Close]
BLAST of Cp4.1LG13g05500 vs. NCBI nr
Match: XP_023549700.1 (uncharacterized protein LOC111808120 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144 bits (364), Expect = 1.95e-43
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MARAGGRSRSVNELSGGGFLKAVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60
          MARAGGRSRSVNELSGGGFLKAVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL
Sbjct: 1  MARAGGRSRSVNELSGGGFLKAVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60

Query: 61 VKKPEGFDMWPFQ 73
          VKKPEGFDMWPFQ
Sbjct: 61 VKKPEGFDMWPFQ 73

[Close]
BLAST of Cp4.1LG13g05500 vs. NCBI nr
Match: KAG6579058.1 (hypothetical protein SDJN03_23506, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137 bits (344), Expect = 5.01e-40
Identity = 70/73 (95.89%), Postives = 70/73 (95.89%), Query Frame = 0 

Query: 1   MARAGGRSRSVNELSGGGFLKAVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60
           MARAGGRSRS NE SGGGFLKAVFR LKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL
Sbjct: 29  MARAGGRSRSGNEPSGGGFLKAVFRLLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 88

Query: 61  VKKPEGFDMWPFQ 73
           VKKPEGFDMWPFQ
Sbjct: 89  VKKPEGFDMWPFQ 101

[Close]
BLAST of Cp4.1LG13g05500 vs. NCBI nr
Match: XP_022938472.1 (uncharacterized protein LOC111444698 [Cucurbita moschata] >KAG7016589.1 hypothetical protein SDJN02_21699 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135 bits (340), Expect = 8.97e-40
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 1  MARAGGRSRSVNELSGGGFLKAVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60
          MARAGGRSRS NE SGGGFLKAVFR LKM EFEILFVLFFIVAFIVFKDLTSRPEYNQIL
Sbjct: 1  MARAGGRSRSGNEPSGGGFLKAVFRLLKMVEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60

Query: 61 VKKPEGFDMWPFQ 73
          VKKPEGFDMWPFQ
Sbjct: 61 VKKPEGFDMWPFQ 73

[Close]
BLAST of Cp4.1LG13g05500 vs. NCBI nr
Match: XP_022993749.1 (uncharacterized protein LOC111489659 [Cucurbita maxima])

HSP 1 Score: 135 bits (339), Expect = 1.27e-39
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 1  MARAGGRSRSVNELSGGGFLKAVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60
          MA AGGRSRS NE SGGGFLK VFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL
Sbjct: 1  MALAGGRSRSGNEPSGGGFLKTVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60

Query: 61 VKKPEGFDMWPFQ 73
          VKKPEGFDMWPFQ
Sbjct: 61 VKKPEGFDMWPFQ 73

[Close]
BLAST of Cp4.1LG13g05500 vs. NCBI nr
Match: XP_008463128.1 (PREDICTED: uncharacterized protein LOC103501353 [Cucumis melo])

HSP 1 Score: 131 bits (330), Expect = 3.01e-38
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 1  MARAGGRSRSVNELSGGGFLKAVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60
          MARA GRSR+ ++ SGGGFLKA FRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL
Sbjct: 1  MARASGRSRNGSDSSGGGFLKATFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60

Query: 61 VKKPEGFDMWPFQ 73
          VKKPEGFDMWPFQ
Sbjct: 61 VKKPEGFDMWPFQ 73

[Close]
BLAST of Cp4.1LG13g05500 vs. ExPASy TrEMBL
Match: A0A6J1FE48 (uncharacterized protein LOC111444698 OS=Cucurbita moschata OX=3662 GN=LOC111444698 PE=4 SV=1)

HSP 1 Score: 135 bits (340), Expect = 4.34e-40
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 1  MARAGGRSRSVNELSGGGFLKAVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60
          MARAGGRSRS NE SGGGFLKAVFR LKM EFEILFVLFFIVAFIVFKDLTSRPEYNQIL
Sbjct: 1  MARAGGRSRSGNEPSGGGFLKAVFRLLKMVEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60

Query: 61 VKKPEGFDMWPFQ 73
          VKKPEGFDMWPFQ
Sbjct: 61 VKKPEGFDMWPFQ 73

[Close]
BLAST of Cp4.1LG13g05500 vs. ExPASy TrEMBL
Match: A0A6J1K0Z3 (uncharacterized protein LOC111489659 OS=Cucurbita maxima OX=3661 GN=LOC111489659 PE=4 SV=1)

HSP 1 Score: 135 bits (339), Expect = 6.17e-40
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 1  MARAGGRSRSVNELSGGGFLKAVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60
          MA AGGRSRS NE SGGGFLK VFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL
Sbjct: 1  MALAGGRSRSGNEPSGGGFLKTVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60

Query: 61 VKKPEGFDMWPFQ 73
          VKKPEGFDMWPFQ
Sbjct: 61 VKKPEGFDMWPFQ 73

[Close]
BLAST of Cp4.1LG13g05500 vs. ExPASy TrEMBL
Match: A0A1S3CK24 (uncharacterized protein LOC103501353 OS=Cucumis melo OX=3656 GN=LOC103501353 PE=4 SV=1)

HSP 1 Score: 131 bits (330), Expect = 1.46e-38
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 1  MARAGGRSRSVNELSGGGFLKAVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60
          MARA GRSR+ ++ SGGGFLKA FRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL
Sbjct: 1  MARASGRSRNGSDSSGGGFLKATFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60

Query: 61 VKKPEGFDMWPFQ 73
          VKKPEGFDMWPFQ
Sbjct: 61 VKKPEGFDMWPFQ 73

[Close]
BLAST of Cp4.1LG13g05500 vs. ExPASy TrEMBL
Match: A0A0A0KPT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G315390 PE=4 SV=1)

HSP 1 Score: 128 bits (321), Expect = 3.65e-37
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = 0 

Query: 1  MARAGGRSRSVNELSGGGFLKAVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60
          MARA GR R+  + SGGGFLKA FRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL
Sbjct: 1  MARATGRIRNGTDSSGGGFLKATFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60

Query: 61 VKKPEGFDMWPFQ 73
          VKKPEGFDMWPFQ
Sbjct: 61 VKKPEGFDMWPFQ 73

[Close]
BLAST of Cp4.1LG13g05500 vs. ExPASy TrEMBL
Match: A0A6J1CIZ9 (uncharacterized protein LOC111011789 OS=Momordica charantia OX=3673 GN=LOC111011789 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 2.47e-35
Identity = 61/73 (83.56%), Postives = 67/73 (91.78%), Query Frame = 0 

Query: 1  MARAGGRSRSVNELSGGGFLKAVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60
          MAR GGRSR+ N+ +  GFLKAV RFLKMAEFEILF+LFF+VAFI+FKDLTSRPEYNQIL
Sbjct: 1  MARTGGRSRNGNDSAVVGFLKAVLRFLKMAEFEILFILFFVVAFILFKDLTSRPEYNQIL 60

Query: 61 VKKPEGFDMWPFQ 73
          VKKPEGFDMWPFQ
Sbjct: 61 VKKPEGFDMWPFQ 73

[Close]
BLAST of Cp4.1LG13g05500 vs. TAIR 10
Match: AT3G14430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 6.2e-16
Identity = 35/54 (64.81%), Postives = 47/54 (87.04%), Query Frame = 0 

Query: 19 FLKAVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQILVKKPEGFDMWPF 73
          F+ +VF F ++AEFEILFVLF ++ +++FKDLTSRPEYN+ILV+KP G D+WPF
Sbjct: 23 FVDSVFYFFRLAEFEILFVLFMLITYVIFKDLTSRPEYNRILVEKPGGSDIWPF 76

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g05500 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g05500 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023549700.11.95e-43100.00uncharacterized protein LOC111808120 [Cucurbita pepo subsp. pepo][more]
KAG6579058.15.01e-4095.89hypothetical protein SDJN03_23506, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022938472.18.97e-4094.52uncharacterized protein LOC111444698 [Cucurbita moschata] >KAG7016589.1 hypothet... [more]
XP_022993749.11.27e-3994.52uncharacterized protein LOC111489659 [Cucurbita maxima][more]
XP_008463128.13.01e-3890.41PREDICTED: uncharacterized protein LOC103501353 [Cucumis melo][more]
BLAST of Cp4.1LG13g05500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FE484.34e-4094.52uncharacterized protein LOC111444698 OS=Cucurbita moschata OX=3662 GN=LOC1114446... [more]
A0A6J1K0Z36.17e-4094.52uncharacterized protein LOC111489659 OS=Cucurbita maxima OX=3661 GN=LOC111489659... [more]
A0A1S3CK241.46e-3890.41uncharacterized protein LOC103501353 OS=Cucumis melo OX=3656 GN=LOC103501353 PE=... [more]
A0A0A0KPT83.65e-3789.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G315390 PE=4 SV=1[more]
A0A6J1CIZ92.47e-3583.56uncharacterized protein LOC111011789 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
BLAST of Cp4.1LG13g05500 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G14430.16.2e-1664.81unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37223OS08G0528601 PROTEINcoord: 3..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g05500.1Cp4.1LG13g05500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006979 response to oxidative stress
cellular_component GO:0016021 integral component of membrane