Cp4.1LG13g05020 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG13g05020
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description60S ribosomal protein L30-like
LocationCp4.1LG13: 5671199 .. 5673262 (-)
RNA-Seq ExpressionCp4.1LG13g05020
SyntenyCp4.1LG13g05020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGACAATGGCGCCGGCGAAGAAGACTGTAAGTGTTACTCTTAACGGTTCATAAATGTTGCATTTCCAATTACTTCAGTGATAATGGTTTTGATGATCTGTGGTGTTGTAATTGCAGAAGAAGACTCATGAGAGCATTAACAACAGGCTCGCCCTTGTGATGAAGAGCGGCAAGTACACACTGGGGTACAAAACCGTTCTTCGCACTATCCGCAGTTCCAAAGGTCTTCGTCCGTTGTTTTCCCTTTCCAAGAAACCTTGTTTATTCGAATTTATATTTTATTTCCATATATATATATATTGACATTTTTCTGTTTTTCGATCTGTGAAAATACAGGAAAGCTTATTATTCTATCGAACAACTGCCCGCCTCTGCGTAAATCCGAAATTGAGTACTACGCAATGCTTGCCAAAATTGGGGTTCACCACTATAACGGAAGTAAGTATAGTAGAGCTTAAGCAGGATTTTTCTGCTTTATTGTATTTTAGAATTGCTCTCATTGCTTGTATTGCGTTTCGTTTTTCACTATTGTAGTATAAGAAATAACAGGCTGTCCTCATCTCAACTCCGTATTGGAGGTTGATTATTGTATATCTGGACAAGAACTTGCTGTGTTTGTAAATGTTGTTTGATTGTATATTTGAGTAACTCGATCGATTACGTAATGGGTGGGTGCTCATAACGGGTTTCCATGACCGGGATAAACGAATTTGATATTCAATGTGTAGTTCGTCCTTGCTAGTTTCCTGTTGATTTGCTAGCATTGTCTTCTACAGATGTTTTCATCATTGGTATATTGCTTATTGAATAAAATAGGTGGGTTGCTTCCATTGGCAGTACATGGTTCTTCTGACTCATAATATTGATGTAGGGTTTTTTTTTTTTGTGTGTGTCAAAGCACAAAACTCACCTCAATGCTCGGTTCGATCGCATCGAAGTGATAGGTGACGCCTGAGTGAAGTGAGGTGCAATGAGTAAATAAATAGTATGGAGATCATAAATTTATAAAAACATAGTCATGAAATTTCAAAGCTTTAAAAATTAATACTAAATGGTAAAAACATCCAAATGTCTAAATTATCCAATAATAATCACAAGTCATGAAGAAGTTTGATTTCCTATTTTGATTGCTGCATGAATCATGTGCCTGCCTTGGTTTTATTGCTAAGAAGAAAAAAACGAAATAGTGATAATTGAATCATGTGCCTGCCTTCAACCATGGGGAAGGTGACGCTGGGAAACCACAGGTGCAGCGTGGAAGTGCTGGATTGAAGTTGGCTTGCCCCAGCTGCTTGCAAGGCCCAAAGGCCTCAGGTTCCCTCGCCCTTAACCATAGGAGAGTGCCTGGTTTAACACTAGTTATTTCCATCCCTTTTGTCCATCTTTTGTTTCAAAAATTGTTAATAAATTAGTGTGTATGCTCGTTCAATCTGCTTTACCTTCTATGCATTTTTATATACGTTTATTAGTATTTTTTGTTTCTTCTGTCTTATATGTTATTTTTGTTATTTGGGTGTACATTTAGGTAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTACCGTGTTTCCTGCCTCAGCATCATTGACCCAGGTACTACAAATTTTATTATTTGGTTTATCGAATTTAAATTTTATGTTGTTATGACGGTCTCTAATTTTCAGTTCTTGAAGTTTGTATAAACTTTTGAACAAAAACTTGATATGATCGCAGTTAGGTGTTCTTGACGGTCTTTAACTTGATACAAATTTTATTATGTGAGTGAATATTACTGCGGACAAATGTTTGAGAGAATACATGCAGTTAGGTGTCGAGTTTTGAAATATATTAAATCTTTTTGTTATATGATTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAANTGTTCAGAATGCTACACTTCGAAAGTTGGCACTAAATAAAACCATTTGTAAGTATAGATATAAAAGAGAAATAAGTAAAACTTTCAGCTGCCTAATACTTGTTTTTTAATGATGGGTTTTACCAATTCTCCTGCTGCTCTATTCTTTTCCAGGTGATTCGGATATTATCAAATCGCTTCCA

mRNA sequence

CGACAATGGCGCCGGCGAAGAAGACTAAGAAGACTCATGAGAGCATTAACAACAGGCTCGCCCTTGTGATGAAGAGCGGCAAGTACACACTGGGGTACAAAACCGTTCTTCGCACTATCCGCAGTTCCAAAGGAAAGCTTATTATTCTATCGAACAACTGCCCGCCTCTGCGTAAATCCGAAATTGAGTACTACGCAATGCTTGCCAAAATTGGGGTTCACCACTATAACGGAAGTAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTACCGTGTTTCCTGCCTCAGCATCATTGACCCAGGTGATTCGGATATTATCAAATCGCTTCCA

Coding sequence (CDS)

ATGGCGCCGGCGAAGAAGACTAAGAAGACTCATGAGAGCATTAACAACAGGCTCGCCCTTGTGATGAAGAGCGGCAAGTACACACTGGGGTACAAAACCGTTCTTCGCACTATCCGCAGTTCCAAAGGAAAGCTTATTATTCTATCGAACAACTGCCCGCCTCTGCGTAAATCCGAAATTGAGTACTACGCAATGCTTGCCAAAATTGGGGTTCACCACTATAACGGAAGTAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTACCGTGTTTCCTGCCTCAGCATCATTGACCCAGGTGATTCGGATATTATCAAATCGCTTCCA

Protein sequence

MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEIEYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP
Homology
[Close]
BLAST of Cp4.1LG13g05020 vs. ExPASy Swiss-Prot
Match: O49884 (60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.2e-52
Identity = 97/109 (88.99%), Postives = 106/109 (97.25%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESINNRLALVMKSGKYTLGYKTVL+++RSSKGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 110
           EYYAMLAK+GVHHYNG+NVDLGTACGKYYRV CLSI+DPGDSDIIK+LP
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLP 109

[Close]
BLAST of Cp4.1LG13g05020 vs. ExPASy Swiss-Prot
Match: Q9M5M6 (60S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 7.3e-50
Identity = 93/109 (85.32%), Postives = 104/109 (95.41%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESIN+RLALVMKSGK+TLGYKTVL ++RS+KGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 110
           EYYAMLAK+GVHHYNG+NVDLGTACGKY+RV CLSIID GDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIP 109

[Close]
BLAST of Cp4.1LG13g05020 vs. ExPASy Swiss-Prot
Match: Q9C8F7 (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.1e-49
Identity = 91/109 (83.49%), Postives = 105/109 (96.33%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 110
           EYYAMLAK+GVHHYN +NVDLGTACGKY+RVSCLSI+DPGDSDIIKSLP
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLP 109

[Close]
BLAST of Cp4.1LG13g05020 vs. ExPASy Swiss-Prot
Match: Q8VZ19 (60S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 6.2e-49
Identity = 89/109 (81.65%), Postives = 103/109 (94.50%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++R SKGKLI++S NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 110
           EYYAMLAK+GVHHYNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIP 109

[Close]
BLAST of Cp4.1LG13g05020 vs. ExPASy Swiss-Prot
Match: Q9LSA3 (60S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 6.9e-48
Identity = 88/109 (80.73%), Postives = 103/109 (94.50%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KK KK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 110
           EYYAMLAK+GVH YNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIK+LP
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLP 109

[Close]
BLAST of Cp4.1LG13g05020 vs. NCBI nr
Match: XP_008460497.1 (PREDICTED: 60S ribosomal protein L30-like [Cucumis melo] >XP_022939971.1 60S ribosomal protein L30-like [Cucurbita moschata] >XP_022992865.1 60S ribosomal protein L30-like [Cucurbita maxima] >XP_023549693.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo] >XP_023549694.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo] >XP_038906736.1 60S ribosomal protein L30-like [Benincasa hispida] >KAA0062391.1 60S ribosomal protein L30-like [Cucumis melo var. makuwa] >KAG6579016.1 60S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016539.1 60S ribosomal protein L30 [Cucurbita argyrosperma subsp. argyrosperma] >TYK26589.1 60S ribosomal protein L30-like [Cucumis melo var. makuwa])

HSP 1 Score: 220 bits (561), Expect = 2.51e-72
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 109
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 109

[Close]
BLAST of Cp4.1LG13g05020 vs. NCBI nr
Match: XP_004140311.1 (60S ribosomal protein L30 [Cucumis sativus] >KGN51019.1 hypothetical protein Csa_008795 [Cucumis sativus])

HSP 1 Score: 219 bits (557), Expect = 1.02e-71
Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIR SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRGSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 109
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 109

[Close]
BLAST of Cp4.1LG13g05020 vs. NCBI nr
Match: XP_022952815.1 (60S ribosomal protein L30-like [Cucurbita moschata] >XP_023525455.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo] >KAG7032743.1 60S ribosomal protein L30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218 bits (556), Expect = 1.46e-71
Identity = 107/109 (98.17%), Postives = 109/109 (100.00%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 109
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLP
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 109

[Close]
BLAST of Cp4.1LG13g05020 vs. NCBI nr
Match: XP_022990953.1 (60S ribosomal protein L30-like [Cucurbita maxima])

HSP 1 Score: 218 bits (554), Expect = 2.94e-71
Identity = 106/109 (97.25%), Postives = 109/109 (100.00%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTV+RTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVIRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 109
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLP
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 109

[Close]
BLAST of Cp4.1LG13g05020 vs. NCBI nr
Match: KAG6602049.1 (60S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218 bits (556), Expect = 4.30e-71
Identity = 107/109 (98.17%), Postives = 109/109 (100.00%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 34  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 93

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 109
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLP
Sbjct: 94  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 142

[Close]
BLAST of Cp4.1LG13g05020 vs. ExPASy TrEMBL
Match: A0A5D3DSZ7 (60S ribosomal protein L30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002180 PE=3 SV=1)

HSP 1 Score: 220 bits (561), Expect = 1.22e-72
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 109
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 109

[Close]
BLAST of Cp4.1LG13g05020 vs. ExPASy TrEMBL
Match: A0A6J1JWW8 (60S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111489070 PE=3 SV=1)

HSP 1 Score: 220 bits (561), Expect = 1.22e-72
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 109
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 109

[Close]
BLAST of Cp4.1LG13g05020 vs. ExPASy TrEMBL
Match: A0A6J1FH91 (60S ribosomal protein L30-like OS=Cucurbita moschata OX=3662 GN=LOC111445673 PE=3 SV=1)

HSP 1 Score: 220 bits (561), Expect = 1.22e-72
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 109
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 109

[Close]
BLAST of Cp4.1LG13g05020 vs. ExPASy TrEMBL
Match: A0A1S3CCQ4 (60S ribosomal protein L30-like OS=Cucumis melo OX=3656 GN=LOC103499296 PE=3 SV=1)

HSP 1 Score: 220 bits (561), Expect = 1.22e-72
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 109
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 109

[Close]
BLAST of Cp4.1LG13g05020 vs. ExPASy TrEMBL
Match: A0A0A0KQ98 (Ribosomal_L7Ae domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G409620 PE=3 SV=1)

HSP 1 Score: 219 bits (557), Expect = 4.96e-72
Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIR SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRGSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 109
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 109

[Close]
BLAST of Cp4.1LG13g05020 vs. TAIR 10
Match: AT1G36240.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 196.1 bits (497), Expect = 1.5e-50
Identity = 91/109 (83.49%), Postives = 105/109 (96.33%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 110
           EYYAMLAK+GVHHYN +NVDLGTACGKY+RVSCLSI+DPGDSDIIKSLP
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLP 109

[Close]
BLAST of Cp4.1LG13g05020 vs. TAIR 10
Match: AT1G77940.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 194.5 bits (493), Expect = 4.4e-50
Identity = 89/109 (81.65%), Postives = 103/109 (94.50%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++R SKGKLI++S NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 110
           EYYAMLAK+GVHHYNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIP 109

[Close]
BLAST of Cp4.1LG13g05020 vs. TAIR 10
Match: AT3G18740.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 191.0 bits (484), Expect = 4.9e-49
Identity = 88/109 (80.73%), Postives = 103/109 (94.50%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KK KK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLP 110
           EYYAMLAK+GVH YNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIK+LP
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLP 109

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g05020 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O498841.2e-5288.9960S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1[more]
Q9M5M67.3e-5085.3260S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1[more]
Q9C8F72.1e-4983.49Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A P... [more]
Q8VZ196.2e-4981.6560S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1[more]
Q9LSA36.9e-4880.7360S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1[more]
BLAST of Cp4.1LG13g05020 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008460497.12.51e-72100.00PREDICTED: 60S ribosomal protein L30-like [Cucumis melo] >XP_022939971.1 60S rib... [more]
XP_004140311.11.02e-7199.0860S ribosomal protein L30 [Cucumis sativus] >KGN51019.1 hypothetical protein Csa... [more]
XP_022952815.11.46e-7198.1760S ribosomal protein L30-like [Cucurbita moschata] >XP_023525455.1 60S ribosoma... [more]
XP_022990953.12.94e-7197.2560S ribosomal protein L30-like [Cucurbita maxima][more]
KAG6602049.14.30e-7198.1760S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Cp4.1LG13g05020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DSZ71.22e-72100.0060S ribosomal protein L30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A6J1JWW81.22e-72100.0060S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111489070 PE=3 ... [more]
A0A6J1FH911.22e-72100.0060S ribosomal protein L30-like OS=Cucurbita moschata OX=3662 GN=LOC111445673 PE=... [more]
A0A1S3CCQ41.22e-72100.0060S ribosomal protein L30-like OS=Cucumis melo OX=3656 GN=LOC103499296 PE=3 SV=1[more]
A0A0A0KQ984.96e-7299.08Ribosomal_L7Ae domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G409... [more]
BLAST of Cp4.1LG13g05020 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G36240.11.5e-5083.49Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT1G77940.14.4e-5081.65Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT3G18740.14.9e-4980.73Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 3..107
e-value: 5.5E-53
score: 179.1
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 13..106
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 13..105
e-value: 3.2E-23
score: 81.3
NoneNo IPR availablePANTHERPTHR11449:SF2660S RIBOSOMAL PROTEIN L30-LIKEcoord: 1..109
IPR039109Ribosomal protein L30/YlxQPANTHERPTHR11449RIBOSOMAL PROTEIN L30coord: 1..109
IPR022991Ribosomal protein L30e, conserved sitePROSITEPS00993RIBOSOMAL_L30E_2coord: 80..100
IPR022991Ribosomal protein L30e, conserved sitePROSITEPS00709RIBOSOMAL_L30E_1coord: 24..48
IPR000231Ribosomal protein L30eHAMAPMF_00481Ribosomal_L30ecoord: 12..109
score: 21.272532

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g05020.1Cp4.1LG13g05020.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome