Cp4.1LG13g04980 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g04980
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	DFRP_C domain-containing protein
Location	Cp4.1LG13: 5678054 .. 5679707 (-)
RNA-Seq Expression	Cp4.1LG13g04980
Synteny	Cp4.1LG13g04980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAGGGAAGTATACGAATATATGGATTTTTTACGTCTCTCCGATTCCCCGCGAATAGAACAGAGGTTGAAGCAGCAATTCATTAGGAGTCTGCAAAATGGGGGCAGAAGAAGCAGCCATGGAACAAGAGAAGCTCGCATCTCGGAATCCAAGGACGATTCCGATCACAGAGACTCAGTTCCTATCCTGGAAGAGGCAGAAGGTACTTTCCCTTCTCCATCGATCTATCTCAGGCTTCGCTTAGGGTTTCTTTTAGGTGTCAATTACTTGTATTTCGTGCCAAAGCCTGTAAAATTAGAGAATTAGGGCTGCGTGAGATGATTATTGTGAATTTGAAAACCTCTAGGATTCATTCAGTTTAGAAAGGCATTGAAGAATTTGCTGAATAGTTTCTTGCATACATCGCATGCCAAACATCACTGTCATTTGACATAAAACAATGAATGAAGATCATTGAATGAAGCCACGGTATTTAACCTTCCCAAATAAGGCAATCAAGCAAAGAACCTAATCTTCTGTAGATTGTTACAGATTATGGAGAGGAATTAGGGGACTGGAGGATTGGGTTCAGACAGTATACAGGAAAGAAGAAACTTCATAGAGAACATTCCTGAAGGCTCAAGAGTCCATTTATGACGATCGTTTAAAGTTGGGGATAGGCAAACTTCTAGTGCAACAAAAAGGAGATTAGCCAAATCTTGAGATTCATGATCATTAAGGGGCTTCTAAAATGAAAAATCATAATCTTTAAGGAGAGTAGAAGAACTGTGACTATAAGGATTAAAATAGAATGGAAAAGCACCTCATTTTGAAGGGAAAATAAAGTGGGGTAGAACAATTTGGAAAGAATTATTTCCGATCCTGAAGTCCTACGAGAAATGAACATGAGTCCCATTTCAGGTGGAAATTTTAATGAAATTGTTAAGGAAGGGGATTATTGAAATTCTGCTAGAAAATACTTGCAATATGTAAGCGGCTATCATTAGATTTGGAGGCTATTAATGTTCTAAATCACGTGTTTCAACAATCGACAGTGACACGGAATGCAGGTTCGATTTTGTTCGAGTCAACTGACCTGAAAGGAAACTCAACCATTCCACCAGTCTTTTATAAGGCGATTTGTGTGTCACTGAAGTCTGAAGCTAATGAGTTGTTGATGTTTGACATCTATCTCCAACCATCTTCTCTTATTTGCAGGATGCTGAGGCATCTGCAAAGAGAGATGAAACAGCAAGGAAGCGTGCGGATGATATAGCCTCAGGAGCAGTGCAAATGAATGGGCGAGAGCTTTTCTTGCACCAACCATGGGTTTTTGATAATTCTCAATATTGAGGTTGGTTTTAGATGGAAACATTGTGGTGCTACGCTTTGTGGTCTCTTGAGATATTGGTCTTTTACTTTAAAATGTTACCTTGTATTGTATTCGACTTTCATTGCTCATACGAGTCGGTAGTCCTTCAGCCCAAAATTTTTATTCTCTTTGGCCATAGTAGCCGTATATGAATCTGTGTAGGTTTCATGCATGGTAAAATCCGTACAAATTTTTTTGAATTGGACCAAGCTTTCAAAGCCATTGATTGTCCTATGCTGTTGGCCTAAAACGACTTTATGGAATGCATTTGTCTTCTGCAGTTTACAAATCACGTGTAAATAA

mRNA sequence

AATAGGGAAGTATACGAATATATGGATTTTTTACGTCTCTCCGATTCCCCGCGAATAGAACAGAGGTTGAAGCAGCAATTCATTAGGAGTCTGCAAAATGGGGGCAGAAGAAGCAGCCATGGAACAAGAGAAGCTCGCATCTCGGAATCCAAGGACGATTCCGATCACAGAGACTCAGTTCCTATCCTGGAAGAGGCAGAAGGATGCTGAGGCATCTGCAAAGAGAGATGAAACAGCAAGGAAGCGTGCGGATGATATAGCCTCAGGAGCAGTGCAAATGAATGGGCGAGAGCTTTTCTTGCACCAACCATGGGTTTTTGATAATTCTCAATATTGAGGTTGGTTTTAGATGGAAACATTGTGGTGCTACGCTTTGTGGTCTCTTGAGATATTGGTCTTTTACTTTAAAATGTTACCTTGTATTGTATTCGACTTTCATTGCTCATACGAGTCGGTAGTCCTTCAGCCCAAAATTTTTATTCTCTTTGGCCATAGTAGCCGTATATGAATCTGTGTAGGTTTCATGCATGGTAAAATCCGTACAAATTTTTTTGAATTGGACCAAGCTTTCAAAGCCATTGATTGTCCTATGCTGTTGGCCTAAAACGACTTTATGGAATGCATTTGTCTTCTGCAGTTTACAAATCACGTGTAAATAA

Coding sequence (CDS)

ATGGGGGCAGAAGAAGCAGCCATGGAACAAGAGAAGCTCGCATCTCGGAATCCAAGGACGATTCCGATCACAGAGACTCAGTTCCTATCCTGGAAGAGGCAGAAGGATGCTGAGGCATCTGCAAAGAGAGATGAAACAGCAAGGAAGCGTGCGGATGATATAGCCTCAGGAGCAGTGCAAATGAATGGGCGAGAGCTTTTCTTGCACCAACCATGGGTTTTTGATAATTCTCAATATTGA

Protein sequence

MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQMNGRELFLHQPWVFDNSQY

Homology

[Close]

BLAST of Cp4.1LG13g04980 vs. NCBI nr
Match: XP_022939418.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata] >XP_023549915.1 zinc finger CCCH domain-containing protein 15 homolog [Cucurbita pepo subsp. pepo] >KAG6579014.1 hypothetical protein SDJN03_23462, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159 bits (403), Expect = 3.32e-49
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60
          MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ
Sbjct: 1  MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60

Query: 61 MNGRELFLHQPWVFDNSQY 79
          MNGRELFLHQPWVFDNSQY
Sbjct: 61 MNGRELFLHQPWVFDNSQY 79

[Close]

BLAST of Cp4.1LG13g04980 vs. NCBI nr
Match: XP_022992866.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucurbita maxima])

HSP 1 Score: 156 bits (394), Expect = 7.86e-48
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60
          M AEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ
Sbjct: 1  MVAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60

Query: 61 MNGRELFLHQPWVFDNSQY 79
          MNGRELFLHQPWVFDNSQY
Sbjct: 61 MNGRELFLHQPWVFDNSQY 79

[Close]

BLAST of Cp4.1LG13g04980 vs. NCBI nr
Match: XP_008460490.1 (PREDICTED: zinc finger CCCH domain-containing protein 15 homolog isoform X2 [Cucumis melo] >XP_016902565.1 PREDICTED: zinc finger CCCH domain-containing protein 15 homolog isoform X2 [Cucumis melo] >XP_016902566.1 PREDICTED: zinc finger CCCH domain-containing protein 15 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 146 bits (368), Expect = 7.30e-44
Identity = 71/79 (89.87%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1  MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60
          MG EEAAMEQEKL+  NPRT+PITE QFLSWKRQKDAEASAKRDETARKRA+DIA GAVQ
Sbjct: 1  MGDEEAAMEQEKLSCNNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIALGAVQ 60

Query: 61 MNGRELFLHQPWVFDNSQY 79
          MNGRELFLHQPWVFDNSQY
Sbjct: 61 MNGRELFLHQPWVFDNSQY 79

[Close]

BLAST of Cp4.1LG13g04980 vs. NCBI nr
Match: XP_011655210.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucumis sativus] >XP_011655211.1 zinc finger CCCH domain-containing protein 15 homolog [Cucumis sativus] >XP_011655212.1 zinc finger CCCH domain-containing protein 15 homolog [Cucumis sativus] >KGN51013.1 hypothetical protein Csa_009113 [Cucumis sativus])

HSP 1 Score: 142 bits (359), Expect = 1.78e-42
Identity = 71/80 (88.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MGAEEAAMEQEK-LASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAV 60
          MGAEEAAMEQEK L+S NPRT+PITE QFLSWKR+KDAEASAKR+ETARKRA+DIA GAV
Sbjct: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60

Query: 61 QMNGRELFLHQPWVFDNSQY 79
          QMNGRELFLHQPWVFDNSQY
Sbjct: 61 QMNGRELFLHQPWVFDNSQY 80

[Close]

BLAST of Cp4.1LG13g04980 vs. NCBI nr
Match: XP_022141384.1 (zinc finger CCCH domain-containing protein 15 homolog [Momordica charantia])

HSP 1 Score: 141 bits (355), Expect = 7.45e-42
Identity = 71/81 (87.65%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MGAEEAA--MEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGA 60
          MGAEEAA  ME+EKL S NPRT PITE QFLSWKRQKDAEASAKRDETARKRA+DIA+GA
Sbjct: 1  MGAEEAAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60

Query: 61 VQMNGRELFLHQPWVFDNSQY 79
          VQMNGRELFLHQPWVFDN+QY
Sbjct: 61 VQMNGRELFLHQPWVFDNTQY 81

[Close]

BLAST of Cp4.1LG13g04980 vs. ExPASy TrEMBL
Match: A0A6J1FLL2 (zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita moschata OX=3662 GN=LOC111445336 PE=4 SV=1)

HSP 1 Score: 159 bits (403), Expect = 1.61e-49
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60
          MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ
Sbjct: 1  MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60

Query: 61 MNGRELFLHQPWVFDNSQY 79
          MNGRELFLHQPWVFDNSQY
Sbjct: 61 MNGRELFLHQPWVFDNSQY 79

[Close]

BLAST of Cp4.1LG13g04980 vs. ExPASy TrEMBL
Match: A0A6J1JUQ1 (zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita maxima OX=3661 GN=LOC111489071 PE=4 SV=1)

HSP 1 Score: 156 bits (394), Expect = 3.80e-48
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60
          M AEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ
Sbjct: 1  MVAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60

Query: 61 MNGRELFLHQPWVFDNSQY 79
          MNGRELFLHQPWVFDNSQY
Sbjct: 61 MNGRELFLHQPWVFDNSQY 79

[Close]

BLAST of Cp4.1LG13g04980 vs. ExPASy TrEMBL
Match: A0A1S3CCP9 (zinc finger CCCH domain-containing protein 15 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499290 PE=4 SV=1)

HSP 1 Score: 146 bits (368), Expect = 3.53e-44
Identity = 71/79 (89.87%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1  MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60
          MG EEAAMEQEKL+  NPRT+PITE QFLSWKRQKDAEASAKRDETARKRA+DIA GAVQ
Sbjct: 1  MGDEEAAMEQEKLSCNNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIALGAVQ 60

Query: 61 MNGRELFLHQPWVFDNSQY 79
          MNGRELFLHQPWVFDNSQY
Sbjct: 61 MNGRELFLHQPWVFDNSQY 79

[Close]

BLAST of Cp4.1LG13g04980 vs. ExPASy TrEMBL
Match: A0A0A0KN87 (DFRP_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G407070 PE=4 SV=1)

HSP 1 Score: 142 bits (359), Expect = 8.60e-43
Identity = 71/80 (88.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MGAEEAAMEQEK-LASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAV 60
          MGAEEAAMEQEK L+S NPRT+PITE QFLSWKR+KDAEASAKR+ETARKRA+DIA GAV
Sbjct: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60

Query: 61 QMNGRELFLHQPWVFDNSQY 79
          QMNGRELFLHQPWVFDNSQY
Sbjct: 61 QMNGRELFLHQPWVFDNSQY 80

[Close]

BLAST of Cp4.1LG13g04980 vs. ExPASy TrEMBL
Match: A0A6J1CIH3 (zinc finger CCCH domain-containing protein 15 homolog OS=Momordica charantia OX=3673 GN=LOC111011797 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 3.61e-42
Identity = 71/81 (87.65%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MGAEEAA--MEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGA 60
          MGAEEAA  ME+EKL S NPRT PITE QFLSWKRQKDAEASAKRDETARKRA+DIA+GA
Sbjct: 1  MGAEEAAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60

Query: 61 VQMNGRELFLHQPWVFDNSQY 79
          VQMNGRELFLHQPWVFDN+QY
Sbjct: 61 VQMNGRELFLHQPWVFDNTQY 81

[Close]

BLAST of Cp4.1LG13g04980 vs. TAIR 10
Match: AT1G22140.1 (unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 87.0 bits (214), Expect = 7.2e-18
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 18 PRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQMNGRELFLHQPWVFDNS 77
          P  I I++ QFL+WKRQKDAE  AK+ E ARKR +DIASG V MNGRELFLH+PWVFD++
Sbjct: 11 PTQISISKDQFLAWKRQKDAELLAKQAEAARKRQEDIASGRVPMNGRELFLHEPWVFDDT 70

Query: 78 QY 80
           +
Sbjct: 71 HH 72

[Close]

BLAST of Cp4.1LG13g04980 vs. TAIR 10
Match: AT1G22140.2 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 4.4e-07
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 18 PRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASG 58
          P  I I++ QFL+WKRQKDAE  AK+ E ARKR +DIASG
Sbjct: 11 PTQISISKDQFLAWKRQKDAELLAKQAEAARKRQEDIASG 50

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g04980 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG13g04980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939418.1	3.32e-49	100.00	zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata] >XP_0...	[more]
XP_022992866.1	7.86e-48	98.73	zinc finger CCCH domain-containing protein 15 homolog [Cucurbita maxima]	[more]
XP_008460490.1	7.30e-44	89.87	PREDICTED: zinc finger CCCH domain-containing protein 15 homolog isoform X2 [Cuc...	[more]
XP_011655210.1	1.78e-42	88.75	zinc finger CCCH domain-containing protein 15 homolog [Cucumis sativus] >XP_0116...	[more]
XP_022141384.1	7.45e-42	87.65	zinc finger CCCH domain-containing protein 15 homolog [Momordica charantia]	[more]

BLAST of Cp4.1LG13g04980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FLL2	1.61e-49	100.00	zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita moschata OX=3...	[more]
A0A6J1JUQ1	3.80e-48	98.73	zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita maxima OX=366...	[more]
A0A1S3CCP9	3.53e-44	89.87	zinc finger CCCH domain-containing protein 15 homolog isoform X2 OS=Cucumis melo...	[more]
A0A0A0KN87	8.60e-43	88.75	DFRP_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G407070 PE=4...	[more]
A0A6J1CIH3	3.61e-42	87.65	zinc finger CCCH domain-containing protein 15 homolog OS=Momordica charantia OX=...	[more]

BLAST of Cp4.1LG13g04980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22140.1	7.2e-18	66.13	unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 0; Bac...	[more]
AT1G22140.2	4.4e-07	65.00	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.20.400.10		coord: 4..71 e-value: 1.1E-5 score: 27.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..51
None	No IPR available	PANTHER	PTHR12681	ZINC FINGER-CONTAINING PROTEIN P48ZNF	coord: 1..79
None	No IPR available	PANTHER	PTHR12681:SF10	OS03G0385301 PROTEIN	coord: 1..79
IPR032378	ZC3H15/TMA46 family, C-terminal	PFAM	PF16543	DFRP_C	coord: 9..75 e-value: 2.3E-8 score: 34.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g04980.1	Cp4.1LG13g04980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
cellular_component	GO:0005829	cytosol