Cp4.1LG13g02380 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAGAGTTACTGGGGATGGGCGGCACGTGTTTTGCTTCACCCTCCCTTGGCCGCAGCACGTTCGCCATTGTTGCTCGTTCGCCATTGTTGCTCCTCTCTTTAATCGATCGGTTCGGGAAACTTGCTCGCAAGCAAACTCATTTCCAGATTCTTTTTCTCTCTTCAATTTCATCTTCCTCTCTTGTTCCTGGTTCAATCTTCCAAGAATGAGTACGGGAGAACTCCTCAGCATCGAACCTCTCGAGCTCAAGTTTCCCTGTGAGTTCATCTTCTTTTGGTGGTGGGGTGGACTGATTTCTTGTTGCGGATCTNTTAATTAAATAGTTTAATTAATCGTTTAATATTACTTTAATTTGAAATTAATTATTCAAATTCATTAGTTGTAGTTTTTTTTCTTTTTCTTTCTGGTTAGTCGAATTGAAGAAGCAGATCTGTTGTTCCCTTCAATTGTCTAACAAGACCGAGAGCTGCGTTGCATTTAAGGTGTGTATTTTGTTTCTCTCCGTTTGAATCTTTTTGGTGTTGATTCAATTTGTGTGATTTCGTAATTGATCTTTTCTCCAGTGAAGTGATTTGGTGCTTGTAGTATGAAGGTGTTCTGGATTTGGAATGTAAGCGTGTGCACTTCCAAATCACTTCTTTTCTTTTTCATTTTTGTCACTCTCTCTTGATGTATCTGTCTGCGCCAGATCACGCTGTGAAATTTGTTGATTTCGTCGATTTTCAATTTGCTCGCGTGTTTCTCTGTTTCTATAATTCATTATTATTTGGAAAATTTAGCAAAGATTAAGCTCGTAATTGATGACTTTGTTCCGTGTTTGTTGTCCACTTAACTCGAATTTTATACTTTTCTAGGTGAAAACTACGAACCCTAAAAAGTACTGCGTTCGCCCAAACACTGGAATTGTCTCGCCACGATCAACATGCGACGTTATAGGTGCCAAATGCCAAATATATTCATTCCAATACTTAATTTTCAAATAAGTTTTTTGGTTACTGATATAAGGATCACTTTGTTGTGTAGTCACAATGCAAGCCCAGAAAGAGGCTCCTCCTGATATGCAATGCAAAGACAAATTCCTCCTTCAGAGTGTTAAAACCGCTGATGGCGTAACCGCAAAGGATATCAATGCAGAAATGGTACATATATGATGAATGTTTAAAGCTTGTGGTTAGTATTAGCATTTTACTTTTATTTAAGGGCGTGGGTTTTGCAGTTCAATAAGGAGGCTGGGCATGTGGTTGAGGAATTCAAGTTGAAAGTCGTTTATGTTTCTCGGCCGCAACCACCTTCTCCAGTACCAGAAGGTTCCGAAGAAGGGTCCTCCCCAAGAGGTTCTTTTTCAGAGAATGGAAACTTCAATGATGCTGATTTGAACACTGTGAGTAGTTGGGTTCTTTTTTTTCCCTTTTTCGTTCAACTGCATGGTTGATTGACGCACCTTCACCTTCCATTGGCAGGCCACGAGGGGATACGTTGAACGGTCGGAGCCCCAGGATAAATCTGCCGAGGTAAAAAATAGGATGATTGTTGGTATGCTCTAGGTGTATAGTTTTATGCCTGCAGATATAGATGATTCTCTTCTTTTCTGTAGCTTTGATACCTGGTTATGCATATCTTGTGATGTATTTTCTCCAACTAATGCCATTTTTTTTTATTAGATAGAACTCGATGCTAATATATGACCTTGTGATTAGAGTGTCACTCCGAGAAGTAAACAACAAAATTTTCTTGGGACAGTATTCTACGGTAGTTGACGATACAGTTGTGAAGTTTTGTGTGTACATGTTACATGATAGAAGTTTTTGTTTAATAAAGAGTTAGGATAGGATACGTCCACTTGGAGCGAACCTCCGATTTTTGTTTTGACTTAAAACGATCTTTTATTGATAAAAGAGTGATGGTATGTTCCTGTGTTGTTGCTCTGTATTTAAACTGTTTCCAAAGTTTCCTGGCAACTAATTGATTCTCCAAAGTATGTTTTATGCATTCAGTTTGGTTTGTTTGTTCGTTGAACATTGTCAAATTCCACGGACTCTCTGTTCCTTGGCGCCACTATCCAACTAATTTCTCTTACACAGCTAATCAATCGTTAGTCTCTTTGCCCAAAGATGCCTAAGCTAAGCTCAGAACATGGTGTCTGCCCACCGTTTATTATCAATAGACAAACTGTTTCAATCTTTCAAGATATTATGGGAAACTCTATCCCTTCGCTTCAGATTTTTTCGTTGAAACCTGAAAAGTACCATAATTCATAAGTCCAACAACCTTTGGATCTCTCCTTCTCCTTGTTCCTTAAAACAAAAATGTTGTTGTTCTTCTTTGTTTGTCCAATGTTCTCAAACCTTTATCATGGTTCTCAAATGTTTTAAAATTATTTGGCACTACACAGATGGTTTGATTGACTAAATCTTGGGCCACTGCAGCTATTTGTGTACGTGTGTGTTTTTGTGTATTCATATGCTGTACTTTCTGCTTCTACCAAGCTGCGTATTGACGGCTACTTGGCATGTGCAGGCTAGAGCCCTCATAGCAAAACTCACAGAGGAAAAGAATAATGCCATGCAACAGAATAACAAGCTTCGTCAGGAATTGGTAAGAAAATGGATGGTTTGAAGCTTCACTGGATGCAATTTTGCTGAAGTTTCCTATATGATTACATGGGAAACAATGCCTTTACTTTTGAGATATACATGCAAAGTTTCTACGTCTCTTTGCCTGAATACCGTTCAACGATTATGCAAATGAAATATTTCTATAACATCGAACGTGTGGTTGTAAATAAAATTATGACCAAATTTGATTCTCATTTTCGTGAAATATTAGAATACCAGGTCTACATTAGTTTCTTACGTTGGACGTCTGCATCGTGCAGGAACTTTTGAAGCGTGAAGGCAGGAAAAATGCCGGTGGCGTCTCCTTCCTGTTCATCATATTAACCGGATTGATTGGAATCATCCTTGGCTATATTATGAAGAAGACTTGAGAATCTCTTTGCAGCAAACTGGATTATATCATTATATCTTCCATGATGAAAGGAAGGGAACTACTAATGTTCTTTGGGTGGATCTGTAGCAAGTTTTAATTTGTTGAAGTAGCAAATTGTTAGGTGGTGTTCAAGAATTTGTAGTTGCTGAATTTGCAAGGTAGCACACTCTAAATGTAACTTAAAAGAGTTTTTTTCCCCCTCTACTCCCCCCTTCTGTTGCCATTCAACTTATTATATTTGGTGACACTGTTGATTTAATAATCTTACAGCCTCCATTGTTACCTGATTTGAAGTTTATATTTTAGAATGAACCAAATCACCTGATAAGCTCGATCCATAGCTCGGGCATTAGATTGCGTTATTTACGAGGACAGAACTTGTTTTGTATCC AAGAGTTACTGGGGATGGGCGGCACGTGTTTTGCTTCACCCTCCCTTGGCCGCAGCACGTTCGCCATTGTTGCTCGTTCGCCATTGTTGCTCCTCTCTTTAATCGATCGGTTCGGGAAACTTGCTCGCAAGCAAACTCATTTCCAGATTCTTTTTCTCTCTTCAATTTCATCTTCCTCTCTTGTTCCTGGTTCAATCTTCCAAGAATGAGTACGGGAGAACTCCTCAGCATCGAACCTCTCGAGCTCAAGTTTCCCTTCGAATTGAAGAAGCAGATCTGTTGTTCCCTTCAATTGTCTAACAAGACCGAGAGCTGCGTTGCATTTAAGTGAAGTGATTTGGTGCTTGTAGTATGAAGGTGTTCTGGATTTGGAATGTGAAAACTACGAACCCTAAAAAGTACTGCGTTCGCCCAAACACTGGAATTGTCTCGCCACGATCAACATGCGACGTTATAGTCACAATGCAAGCCCAGAAAGAGGCTCCTCCTGATATGCAATGCAAAGACAAATTCCTCCTTCAGAGTGTTAAAACCGCTGATGGCGTAACCGCAAAGGATATCAATGCAGAAATGTTCAATAAGGAGGCTGGGCATGTGGTTGAGGAATTCAAGTTGAAAGTCGTTTATGTTTCTCGGCCGCAACCACCTTCTCCAGTACCAGAAGGTTCCGAAGAAGGGTCCTCCCCAAGAGGTTCTTTTTCAGAGAATGGAAACTTCAATGATGCTGATTTGAACACTGCCACGAGGGGATACGTTGAACGGTCGGAGCCCCAGGATAAATCTGCCGAGGCTAGAGCCCTCATAGCAAAACTCACAGAGGAAAAGAATAATGCCATGCAACAGAATAACAAGCTTCGTCAGGAATTGGAACTTTTGAAGCGTGAAGGCAGGAAAAATGCCGGTGGCGTCTCCTTCCTGTTCATCATATTAACCGGATTGATTGGAATCATCCTTGGCTATATTATGAAGAAGACTTGAGAATCTCTTTGCAGCAAACTGGATTATATCATTATATCTTCCATGATGAAAGGAAGGGAACTACTAATGTTCTTTGGGTGGATCTGTAGCAAGTTTTAATTTGTTGAAGTAGCAAATTGTTAGGTGGTGTTCAAGAATTTGTAGTTGCTGAATTTGCAAGGTAGCACACTCTAAATGTAACTTAAAAGAGTTTTTTTCCCCCTCTACTCCCCCCTTCTGTTGCCATTCAACTTATTATATTTGGTGACACTGTTGATTTAATAATCTTACAGCCTCCATTGTTACCTGATTTGAAGTTTATATTTTAGAATGAACCAAATCACCTGATAAGCTCGATCCATAGCTCGGGCATTAGATTGCGTTATTTACGAGGACAGAACTTGTTTTGTATCC ATGAAGGTGTTCTGGATTTGGAATGTGAAAACTACGAACCCTAAAAAGTACTGCGTTCGCCCAAACACTGGAATTGTCTCGCCACGATCAACATGCGACGTTATAGTCACAATGCAAGCCCAGAAAGAGGCTCCTCCTGATATGCAATGCAAAGACAAATTCCTCCTTCAGAGTGTTAAAACCGCTGATGGCGTAACCGCAAAGGATATCAATGCAGAAATGTTCAATAAGGAGGCTGGGCATGTGGTTGAGGAATTCAAGTTGAAAGTCGTTTATGTTTCTCGGCCGCAACCACCTTCTCCAGTACCAGAAGGTTCCGAAGAAGGGTCCTCCCCAAGAGGTTCTTTTTCAGAGAATGGAAACTTCAATGATGCTGATTTGAACACTGCCACGAGGGGATACGTTGAACGGTCGGAGCCCCAGGATAAATCTGCCGAGGCTAGAGCCCTCATAGCAAAACTCACAGAGGAAAAGAATAATGCCATGCAACAGAATAACAAGCTTCGTCAGGAATTGGAACTTTTGAAGCGTGAAGGCAGGAAAAATGCCGGTGGCGTCTCCTTCCTGTTCATCATATTAACCGGATTGATTGGAATCATCCTTGGCTATATTATGAAGAAGACTTGA MKVFWIWNVKTTNPKKYCVRPNTGIVSPRSTCDVIVTMQAQKEAPPDMQCKDKFLLQSVKTADGVTAKDINAEMFNKEAGHVVEEFKLKVVYVSRPQPPSPVPEGSEEGSSPRGSFSENGNFNDADLNTATRGYVERSEPQDKSAEARALIAKLTEEKNNAMQQNNKLRQELELLKREGRKNAGGVSFLFIILTGLIGIILGYIMKKT Homology
BLAST of Cp4.1LG13g02380 vs. ExPASy Swiss-Prot
Match: Q9SHC8 (Vesicle-associated protein 1-2 OS=Arabidopsis thaliana OX=3702 GN=PVA12 PE=1 SV=1) HSP 1 Score: 251.9 bits (642), Expect = 6.3e-66 Identity = 131/203 (64.53%), Postives = 163/203 (80.30%), Query Frame = 0
BLAST of Cp4.1LG13g02380 vs. ExPASy Swiss-Prot
Match: Q8VZ95 (Vesicle-associated protein 1-1 OS=Arabidopsis thaliana OX=3702 GN=PVA11 PE=1 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 2.9e-63 Identity = 128/204 (62.75%), Postives = 166/204 (81.37%), Query Frame = 0
BLAST of Cp4.1LG13g02380 vs. ExPASy Swiss-Prot
Match: Q84WW5 (Vesicle-associated protein 1-3 OS=Arabidopsis thaliana OX=3702 GN=PVA13 PE=2 SV=1) HSP 1 Score: 214.5 bits (545), Expect = 1.1e-54 Identity = 113/202 (55.94%), Postives = 156/202 (77.23%), Query Frame = 0
BLAST of Cp4.1LG13g02380 vs. ExPASy Swiss-Prot
Match: Q9SYC9 (Vesicle-associated protein 1-4 OS=Arabidopsis thaliana OX=3702 GN=PVA14 PE=2 SV=1) HSP 1 Score: 152.1 bits (383), Expect = 6.7e-36 Identity = 75/119 (63.03%), Postives = 91/119 (76.47%), Query Frame = 0
BLAST of Cp4.1LG13g02380 vs. ExPASy Swiss-Prot
Match: Q9LVU1 (Vesicle-associated protein 2-1 OS=Arabidopsis thaliana OX=3702 GN=PVA21 PE=1 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 1.2e-27 Identity = 79/204 (38.73%), Postives = 116/204 (56.86%), Query Frame = 0
BLAST of Cp4.1LG13g02380 vs. NCBI nr
Match: XP_022922308.1 (vesicle-associated protein 1-2-like isoform X2 [Cucurbita moschata] >XP_023550758.1 vesicle-associated protein 1-2-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 407 bits (1045), Expect = 6.10e-143 Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0
BLAST of Cp4.1LG13g02380 vs. NCBI nr
Match: XP_022922307.1 (vesicle-associated protein 1-2-like isoform X1 [Cucurbita moschata] >XP_023550757.1 vesicle-associated protein 1-2-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 387 bits (994), Expect = 1.18e-134 Identity = 200/202 (99.01%), Postives = 201/202 (99.50%), Query Frame = 0
BLAST of Cp4.1LG13g02380 vs. NCBI nr
Match: KAG6579415.1 (Vesicle-associated protein 1-2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 384 bits (986), Expect = 1.95e-133 Identity = 199/202 (98.51%), Postives = 200/202 (99.01%), Query Frame = 0
BLAST of Cp4.1LG13g02380 vs. NCBI nr
Match: XP_022969723.1 (vesicle-associated protein 1-2-like [Cucurbita maxima]) HSP 1 Score: 385 bits (990), Expect = 3.72e-133 Identity = 199/202 (98.51%), Postives = 200/202 (99.01%), Query Frame = 0
BLAST of Cp4.1LG13g02380 vs. NCBI nr
Match: KAG7016892.1 (Vesicle-associated protein 1-2, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 385 bits (988), Expect = 7.50e-133 Identity = 199/202 (98.51%), Postives = 200/202 (99.01%), Query Frame = 0
BLAST of Cp4.1LG13g02380 vs. ExPASy TrEMBL
Match: A0A6J1E673 (vesicle-associated protein 1-2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430328 PE=4 SV=1) HSP 1 Score: 407 bits (1045), Expect = 2.95e-143 Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0
BLAST of Cp4.1LG13g02380 vs. ExPASy TrEMBL
Match: A0A6J1E2V8 (vesicle-associated protein 1-2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430328 PE=4 SV=1) HSP 1 Score: 387 bits (994), Expect = 5.71e-135 Identity = 200/202 (99.01%), Postives = 201/202 (99.50%), Query Frame = 0
BLAST of Cp4.1LG13g02380 vs. ExPASy TrEMBL
Match: A0A6J1I1T7 (vesicle-associated protein 1-2-like OS=Cucurbita maxima OX=3661 GN=LOC111468836 PE=4 SV=1) HSP 1 Score: 385 bits (990), Expect = 1.80e-133 Identity = 199/202 (98.51%), Postives = 200/202 (99.01%), Query Frame = 0
BLAST of Cp4.1LG13g02380 vs. ExPASy TrEMBL
Match: A0A5A7T8A8 (Vesicle-associated protein 1-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold558G00430 PE=4 SV=1) HSP 1 Score: 358 bits (919), Expect = 1.53e-123 Identity = 184/202 (91.09%), Postives = 191/202 (94.55%), Query Frame = 0
BLAST of Cp4.1LG13g02380 vs. ExPASy TrEMBL
Match: A0A1S3ATQ2 (vesicle-associated protein 1-2 OS=Cucumis melo OX=3656 GN=LOC103482614 PE=4 SV=1) HSP 1 Score: 358 bits (919), Expect = 1.53e-123 Identity = 184/202 (91.09%), Postives = 191/202 (94.55%), Query Frame = 0
BLAST of Cp4.1LG13g02380 vs. TAIR 10
Match: AT2G45140.1 (plant VAP homolog 12 ) HSP 1 Score: 251.9 bits (642), Expect = 4.4e-67 Identity = 131/203 (64.53%), Postives = 163/203 (80.30%), Query Frame = 0
BLAST of Cp4.1LG13g02380 vs. TAIR 10
Match: AT3G60600.1 (vesicle associated protein ) HSP 1 Score: 243.0 bits (619), Expect = 2.1e-64 Identity = 128/204 (62.75%), Postives = 166/204 (81.37%), Query Frame = 0
BLAST of Cp4.1LG13g02380 vs. TAIR 10
Match: AT4G00170.1 (Plant VAMP (vesicle-associated membrane protein) family protein ) HSP 1 Score: 214.5 bits (545), Expect = 7.9e-56 Identity = 113/202 (55.94%), Postives = 156/202 (77.23%), Query Frame = 0
BLAST of Cp4.1LG13g02380 vs. TAIR 10
Match: AT3G60600.3 (vesicle associated protein ) HSP 1 Score: 177.6 bits (449), Expect = 1.1e-44 Identity = 92/136 (67.65%), Postives = 106/136 (77.94%), Query Frame = 0
BLAST of Cp4.1LG13g02380 vs. TAIR 10
Match: AT3G60600.2 (vesicle associated protein ) HSP 1 Score: 176.4 bits (446), Expect = 2.4e-44 Identity = 86/115 (74.78%), Postives = 99/115 (86.09%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|