Cp4.1LG13g01250 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g01250
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ethylene-responsive transcription factor CRF2-like
Location	Cp4.1LG13: 859999 .. 860889 (-)
RNA-Seq Expression	Cp4.1LG13g01250
Synteny	Cp4.1LG13g01250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCTGAACCTTGTTAAGCTCACTTCAGTGCCGGAAACCAGGCAGAGGGTTGTACGGATTTCTGTTTCCGACGGTGATGCCACTGATTCCTCCAGCGATGATGAGCCTGAAATGTTTGGTCGTCAAAGAGTCAAGAAGTTTGTTAATGAAATTACGATTGAACCGTCTTGTTCTGGTGAAGGAAATGGAATCTGGGGTGGGAACAGATCGGAGAGGATTGGACTGAGACGGTCGCCGGGGAAATGTGGGGTTTCGAGGAATCGACGGTCTGTGAAGCCGCCCATTGGGAAGAAGTTCCGCGGCGTGAGACAGAGGCCGTGGGGAAAATGGGCGGCGGAAATCAGAGACCCACTTCGCCGTGTACGCCTCTGGTTGGGAACTTACGACACGGCTGAGGAAGCTGCTATGGTTTACGACAACGCCGCCATTCAACTCCGGGGACCAGATGCACTTACTAATTTCACTACCCAACCGCCGAAATCATCCGCCGGCTACAACTCCGGCGAGGAATCGAACAACAACATTTCCTCTCCAACCTCTGTCCTCCGATGTCCTTCTCCGGCCATTGAAGAAATCCATCCGCAAATCCCCGGCGAGCCCGACAACTCTTGTATGTCGGAAAATCTCTCGTCGGAATTCTCGAGCTGCTCCGACACCTTCATTCCCGACGACATTTTCACCTTCGAAACTACGATTCCAACTTTATTCGACGAGTTAGGCGACGGTTCCTTCAACGACTTCTTCAGTGACGGCGGTTCCTTCAACGGCGTGTTTCACAGTCCGGTCGAAGAAATCGGATCCGGGCTCGTGTTAGAATACCCGACTCCTCCTCCTGACGACTTCTTTCAAGACTTCAGCGATGTGTTCGGGTCGGATCCTCTCGTCGTCCTT

mRNA sequence

CATCTGAACCTTGTTAAGCTCACTTCAGTGCCGGAAACCAGGCAGAGGGTTGTACGGATTTCTGTTTCCGACGGTGATGCCACTGATTCCTCCAGCGATGATGAGCCTGAAATGTTTGGTCGTCAAAGAGTCAAGAAGTTTGTTAATGAAATTACGATTGAACCGTCTTGTTCTGGTGAAGGAAATGGAATCTGGGAAATCCATCCGCAAATCCCCGGCGAGCCCGACAACTCTTGTATGTCGGAAAATCTCTCGTCGGAATTCTCGAGCTGCTCCGACACCTTCATTCCCGACGACATTTTCACCTTCGAAACTACGATTCCAACTTTATTCGACGAGTTAGGCGACGGTTCCTTCAACGACTTCTTCAGTGACGGCGGTTCCTTCAACGGCGTGTTTCACAGTCCGGTCGAAGAAATCGGATCCGGGCTCGTGTTAGAATACCCGACTCCTCCTCCTGACGACTTCTTTCAAGACTTCAGCGATGTGTTCGGGTCGGATCCTCTCGTCGTCCTT

Coding sequence (CDS)

CATCTGAACCTTGTTAAGCTCACTTCAGTGCCGGAAACCAGGCAGAGGGTTGTACGGATTTCTGTTTCCGACGGTGATGCCACTGATTCCTCCAGCGATGATGAGCCTGAAATGTTTGGTCGTCAAAGAGTCAAGAAGTTTGTTAATGAAATTACGATTGAACCGTCTTGTTCTGGTGAAGGAAATGGAATCTGGGAAATCCATCCGCAAATCCCCGGCGAGCCCGACAACTCTTGTATGTCGGAAAATCTCTCGTCGGAATTCTCGAGCTGCTCCGACACCTTCATTCCCGACGACATTTTCACCTTCGAAACTACGATTCCAACTTTATTCGACGAGTTAGGCGACGGTTCCTTCAACGACTTCTTCAGTGACGGCGGTTCCTTCAACGGCGTGTTTCACAGTCCGGTCGAAGAAATCGGATCCGGGCTCGTGTTAGAATACCCGACTCCTCCTCCTGACGACTTCTTTCAAGACTTCAGCGATGTGTTCGGGTCGGATCCTCTCGTCGTCCTT

Protein sequence

HLNLVKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGEGNGIWEIHPQIPGEPDNSCMSENLSSEFSSCSDTFIPDDIFTFETTIPTLFDELGDGSFNDFFSDGGSFNGVFHSPVEEIGSGLVLEYPTPPPDDFFQDFSDVFGSDPLVVL

Homology

[Close]

BLAST of Cp4.1LG13g01250 vs. ExPASy Swiss-Prot
Match: Q9SUE3 (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana OX=3702 GN=CRF4 PE=1 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-08
Identity = 30/60 (50.00%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 3  NLVKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGEGN 62
          ++ + TSV ++  R+VR+S++D DATDSSSD+E  +F R+RVK+ +NEI +EPS S  G+
Sbjct: 29 SMERKTSVRDS-ARLVRVSMTDRDATDSSSDEEEFLFPRRRVKRLINEIRVEPSSSSTGD 87

[Close]

BLAST of Cp4.1LG13g01250 vs. ExPASy Swiss-Prot
Match: Q9FK12 (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana OX=3702 GN=CRF3 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.2e-07
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 18 VRISVSDGDATDSSSDDEPE--MFGRQRVKKFVNEITIEPSCSGEGNGI 65
          V I  +D DATDSSSD++ E  +F R+RVK+FVNEIT+EPSC+    G+
Sbjct: 39 VSICYTDPDATDSSSDEDEEDFLFPRRRVKRFVNEITVEPSCNNVVTGV 87

[Close]

BLAST of Cp4.1LG13g01250 vs. ExPASy Swiss-Prot
Match: Q9SUQ2 (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana OX=3702 GN=CRF2 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.3e-05
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 6  KLTSVPETRQRVVRISVSDGDATDSSSDDEPE-----MFGRQRVKKFVNEITIE 55
          +LT+  +T  R++RISV+D DATDSSSDDE E     +  R+RVKKFVNE+ ++
Sbjct: 27 ELTNTHQT--RILRISVTDPDATDSSSDDEEEEHQRFVSKRRRVKKFVNEVYLD 78

[Close]

BLAST of Cp4.1LG13g01250 vs. ExPASy Swiss-Prot
Match: Q9C995 (Ethylene-responsive transcription factor ERF070 OS=Arabidopsis thaliana OX=3702 GN=ERF070 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.6e-04
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 15 QRVVRISVSDGDATDSSSDDEPEMFG-----RQRVKKFVNEITIEPSCSGE 61
          +R++RIS +D +ATDSSSD++ E  G     R+R K+ V EI I+PS S +
Sbjct: 2  KRIIRISFTDAEATDSSSDEDTEERGGASQTRRRGKRLVKEIVIDPSDSAD 52

[Close]

BLAST of Cp4.1LG13g01250 vs. NCBI nr
Match: XP_023550210.1 (ethylene-responsive transcription factor CRF2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 304 bits (778), Expect = 2.38e-101
Identity = 172/297 (57.91%), Postives = 172/297 (57.91%), Query Frame = 0


Query: 1   HLNLVKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE 60
           HLNLVKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE
Sbjct: 16  HLNLVKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE 75

Query: 61  GNGIW------------------------------------------------------- 120
           GNGIW                                                       
Sbjct: 76  GNGIWGGNRSERIGLRRSPGKCGVSRNRRSVKPPIGKKFRGVRQRPWGKWAAEIRDPLRR 135

Query: 121 ------------------------------------------------------------ 172
                                                                       
Sbjct: 136 VRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQPPKSSAGYNSGEESNNNISSPTS 195

[Close]

BLAST of Cp4.1LG13g01250 vs. NCBI nr
Match: XP_022929005.1 (ethylene-responsive transcription factor CRF2-like [Cucurbita moschata])

HSP 1 Score: 289 bits (740), Expect = 1.61e-95
Identity = 166/301 (55.15%), Postives = 167/301 (55.48%), Query Frame = 0


Query: 1   HLNLVKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE 60
           HLN VKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE
Sbjct: 16  HLNHVKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE 75

Query: 61  GNGIW------------------------------------------------------- 120
           GNGIW                                                       
Sbjct: 76  GNGIWGGNRSERIGLRRSPGKCGVSRNRRSVKPPIGKKFRGVRQRPWGKWAAEIRDPLRR 135

Query: 121 ------------------------------------------------------------ 172
                                                                       
Sbjct: 136 VRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQPPKSSAGKSAGYNSGDESNNNIC 195

[Close]

BLAST of Cp4.1LG13g01250 vs. NCBI nr
Match: KAG6579544.1 (Ethylene-responsive transcription factor CRF4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017002.1 Ethylene-responsive transcription factor CRF4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 289 bits (740), Expect = 1.61e-95
Identity = 166/301 (55.15%), Postives = 167/301 (55.48%), Query Frame = 0


Query: 1   HLNLVKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE 60
           HLN VKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE
Sbjct: 16  HLNHVKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE 75

Query: 61  GNGIW------------------------------------------------------- 120
           GNGIW                                                       
Sbjct: 76  GNGIWGGNRSERIGLRRSPGKCGVSRNRRSVKPPIGKKFRGVRQRPWGKWAAEIRDPLRR 135

Query: 121 ------------------------------------------------------------ 172
                                                                       
Sbjct: 136 VRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQPPKSSAGKSAGYNSGEESNNNIC 195

[Close]

BLAST of Cp4.1LG13g01250 vs. NCBI nr
Match: XP_022970071.1 (ethylene-responsive transcription factor CRF2-like [Cucurbita maxima])

HSP 1 Score: 288 bits (738), Expect = 3.23e-95
Identity = 166/301 (55.15%), Postives = 167/301 (55.48%), Query Frame = 0


Query: 1   HLNLVKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE 60
           HLN VKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE
Sbjct: 16  HLNHVKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE 75

Query: 61  GNGIW------------------------------------------------------- 120
           GNGIW                                                       
Sbjct: 76  GNGIWGGNRSERIGLRRSPGKCGVSKNRRSVKPLIGKKFRGVRQRPWGKWAAEIRDPLRR 135

Query: 121 ------------------------------------------------------------ 172
                                                                       
Sbjct: 136 VRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQPPKSSSGKCADYNSGEESNNNIC 195

[Close]

BLAST of Cp4.1LG13g01250 vs. NCBI nr
Match: XP_038875480.1 (ethylene-responsive transcription factor CRF2-like [Benincasa hispida])

HSP 1 Score: 226 bits (576), Expect = 1.27e-70
Identity = 141/304 (46.38%), Postives = 150/304 (49.34%), Query Frame = 0


Query: 1   HLNLVKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE 60
           HLN VKLTS+PE R RVVRISV+DGDATDSSSDDE EMFGR RVKKFVNEITIEPSCSGE
Sbjct: 18  HLNHVKLTSMPEIRPRVVRISVTDGDATDSSSDDESEMFGRHRVKKFVNEITIEPSCSGE 77

Query: 61  GNGIW------------------------------------------------------- 120
           GNGIW                                                       
Sbjct: 78  GNGIWGLNRSARTRLRRSTGKCGAPSRNRRSAKGTPGKKFRGVRQRPWGKWAAEIRDPLR 137

Query: 121 ------------------------------------------------------------ 172
                                                                       
Sbjct: 138 RVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQQPKSFDGKCSGYNSGEESNNIC 197

[Close]

BLAST of Cp4.1LG13g01250 vs. ExPASy TrEMBL
Match: A0A6J1ET08 (ethylene-responsive transcription factor CRF2-like OS=Cucurbita moschata OX=3662 GN=LOC111435736 PE=4 SV=1)

HSP 1 Score: 289 bits (740), Expect = 7.78e-96
Identity = 166/301 (55.15%), Postives = 167/301 (55.48%), Query Frame = 0


Query: 1   HLNLVKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE 60
           HLN VKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE
Sbjct: 16  HLNHVKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE 75

Query: 61  GNGIW------------------------------------------------------- 120
           GNGIW                                                       
Sbjct: 76  GNGIWGGNRSERIGLRRSPGKCGVSRNRRSVKPPIGKKFRGVRQRPWGKWAAEIRDPLRR 135

Query: 121 ------------------------------------------------------------ 172
                                                                       
Sbjct: 136 VRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQPPKSSAGKSAGYNSGDESNNNIC 195

[Close]

BLAST of Cp4.1LG13g01250 vs. ExPASy TrEMBL
Match: A0A6J1HZK2 (ethylene-responsive transcription factor CRF2-like OS=Cucurbita maxima OX=3661 GN=LOC111469071 PE=4 SV=1)

HSP 1 Score: 288 bits (738), Expect = 1.57e-95
Identity = 166/301 (55.15%), Postives = 167/301 (55.48%), Query Frame = 0


Query: 1   HLNLVKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE 60
           HLN VKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE
Sbjct: 16  HLNHVKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE 75

Query: 61  GNGIW------------------------------------------------------- 120
           GNGIW                                                       
Sbjct: 76  GNGIWGGNRSERIGLRRSPGKCGVSKNRRSVKPLIGKKFRGVRQRPWGKWAAEIRDPLRR 135

Query: 121 ------------------------------------------------------------ 172
                                                                       
Sbjct: 136 VRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQPPKSSSGKCADYNSGEESNNNIC 195

[Close]

BLAST of Cp4.1LG13g01250 vs. ExPASy TrEMBL
Match: A0A5A7TMW3 (Ethylene-responsive transcription factor CRF2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G002040 PE=4 SV=1)

HSP 1 Score: 209 bits (532), Expect = 2.65e-64
Identity = 134/305 (43.93%), Postives = 145/305 (47.54%), Query Frame = 0


Query: 1   HLNLVKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE 60
           HLN VKLTS+P+ R RVVRISV+DGDATDSSSDDE EMFGR RVKKFVNEI+IEPSCSGE
Sbjct: 16  HLNHVKLTSMPDIRPRVVRISVTDGDATDSSSDDESEMFGRHRVKKFVNEISIEPSCSGE 75

Query: 61  GNGIW------------------------------------------------------- 120
           GN IW                                                       
Sbjct: 76  GNRIWGLNRSARTGLRRSTGKCGVPSRNRRSTKVSTGKKFRGVRQRPWGKWAAEIRDPLR 135

Query: 121 ------------------------------------------------------------ 172
                                                                       
Sbjct: 136 RVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQQTKSFTEKCSGYNSGEESNNNI 195

[Close]

BLAST of Cp4.1LG13g01250 vs. ExPASy TrEMBL
Match: A0A1S3AUG2 (ethylene-responsive transcription factor CRF2-like OS=Cucumis melo OX=3656 GN=LOC103482804 PE=4 SV=1)

HSP 1 Score: 209 bits (532), Expect = 2.65e-64
Identity = 134/305 (43.93%), Postives = 145/305 (47.54%), Query Frame = 0


Query: 1   HLNLVKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE 60
           HLN VKLTS+P+ R RVVRISV+DGDATDSSSDDE EMFGR RVKKFVNEI+IEPSCSGE
Sbjct: 16  HLNHVKLTSMPDIRPRVVRISVTDGDATDSSSDDESEMFGRHRVKKFVNEISIEPSCSGE 75

Query: 61  GNGIW------------------------------------------------------- 120
           GN IW                                                       
Sbjct: 76  GNRIWGLNRSARTGLRRSTGKCGVPSRNRRSTKVSTGKKFRGVRQRPWGKWAAEIRDPLR 135

Query: 121 ------------------------------------------------------------ 172
                                                                       
Sbjct: 136 RVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQQTKSFTEKCSGYNSGEESNNNI 195

[Close]

BLAST of Cp4.1LG13g01250 vs. ExPASy TrEMBL
Match: A0A0A0KNS8 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G151530 PE=4 SV=1)

HSP 1 Score: 206 bits (523), Expect = 6.05e-63
Identity = 131/305 (42.95%), Postives = 144/305 (47.21%), Query Frame = 0


Query: 1   HLNLVKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGE 60
           HLN VKLTS+P+ R RVVRISV+DGDATDSSSDDE EMFGR RVKKFVNEI+IEPSCSGE
Sbjct: 16  HLNHVKLTSMPDIRPRVVRISVTDGDATDSSSDDESEMFGRHRVKKFVNEISIEPSCSGE 75

Query: 61  GNGIW------------------------------------------------------- 120
           GN IW                                                       
Sbjct: 76  GNRIWGSNRSARTGQRRSTGKCGVPSRNRRSAKVSTGKKFRGVRQRPWGKWAAEIRDPLR 135

Query: 121 ------------------------------------------------------------ 172
                                                                       
Sbjct: 136 RVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQQSKSFEEKCSGYNSGEESNNNI 195

[Close]

BLAST of Cp4.1LG13g01250 vs. TAIR 10
Match: AT4G27950.1 (cytokinin response factor 4 )

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-09
Identity = 30/60 (50.00%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 3  NLVKLTSVPETRQRVVRISVSDGDATDSSSDDEPEMFGRQRVKKFVNEITIEPSCSGEGN 62
          ++ + TSV ++  R+VR+S++D DATDSSSD+E  +F R+RVK+ +NEI +EPS S  G+
Sbjct: 29 SMERKTSVRDS-ARLVRVSMTDRDATDSSSDEEEFLFPRRRVKRLINEIRVEPSSSSTGD 87

[Close]

BLAST of Cp4.1LG13g01250 vs. TAIR 10
Match: AT5G53290.1 (cytokinin response factor 3 )

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-08
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 18 VRISVSDGDATDSSSDDEPE--MFGRQRVKKFVNEITIEPSCSGEGNGI 65
          V I  +D DATDSSSD++ E  +F R+RVK+FVNEIT+EPSC+    G+
Sbjct: 39 VSICYTDPDATDSSSDEDEEDFLFPRRRVKRFVNEITVEPSCNNVVTGV 87

[Close]

BLAST of Cp4.1LG13g01250 vs. TAIR 10
Match: AT4G23750.1 (cytokinin response factor 2 )

HSP 1 Score: 50.4 bits (119), Expect = 1.6e-06
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 6  KLTSVPETRQRVVRISVSDGDATDSSSDDEPE-----MFGRQRVKKFVNEITIE 55
          +LT+  +T  R++RISV+D DATDSSSDDE E     +  R+RVKKFVNE+ ++
Sbjct: 27 ELTNTHQT--RILRISVTDPDATDSSSDDEEEEHQRFVSKRRRVKKFVNEVYLD 78

[Close]

BLAST of Cp4.1LG13g01250 vs. TAIR 10
Match: AT4G23750.2 (cytokinin response factor 2 )

HSP 1 Score: 50.4 bits (119), Expect = 1.6e-06
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 6  KLTSVPETRQRVVRISVSDGDATDSSSDDEPE-----MFGRQRVKKFVNEITIE 55
          +LT+  +T  R++RISV+D DATDSSSDDE E     +  R+RVKKFVNE+ ++
Sbjct: 27 ELTNTHQT--RILRISVTDPDATDSSSDDEEEEHQRFVSKRRRVKKFVNEVYLD 78

[Close]

BLAST of Cp4.1LG13g01250 vs. TAIR 10
Match: AT1G71130.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 4.0e-05
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 15 QRVVRISVSDGDATDSSSDDEPEMFG-----RQRVKKFVNEITIEPSCSGE 61
          +R++RIS +D +ATDSSSD++ E  G     R+R K+ V EI I+PS S +
Sbjct: 2  KRIIRISFTDAEATDSSSDEDTEERGGASQTRRRGKRLVKEIVIDPSDSAD 52

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g01250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SUE3	2.9e-08	50.00	Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9FK12	3.2e-07	57.14	Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9SUQ2	2.3e-05	53.70	Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9C995	5.6e-04	47.06	Ethylene-responsive transcription factor ERF070 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cp4.1LG13g01250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023550210.1	2.38e-101	57.91	ethylene-responsive transcription factor CRF2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022929005.1	1.61e-95	55.15	ethylene-responsive transcription factor CRF2-like [Cucurbita moschata]	[more]
KAG6579544.1	1.61e-95	55.15	Ethylene-responsive transcription factor CRF4, partial [Cucurbita argyrosperma s...	[more]
XP_022970071.1	3.23e-95	55.15	ethylene-responsive transcription factor CRF2-like [Cucurbita maxima]	[more]
XP_038875480.1	1.27e-70	46.38	ethylene-responsive transcription factor CRF2-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG13g01250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ET08	7.78e-96	55.15	ethylene-responsive transcription factor CRF2-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1HZK2	1.57e-95	55.15	ethylene-responsive transcription factor CRF2-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A5A7TMW3	2.65e-64	43.93	Ethylene-responsive transcription factor CRF2-like OS=Cucumis melo var. makuwa O...	[more]
A0A1S3AUG2	2.65e-64	43.93	ethylene-responsive transcription factor CRF2-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0KNS8	6.05e-63	42.95	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G151530 PE=...	[more]

BLAST of Cp4.1LG13g01250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27950.1	2.0e-09	50.00	cytokinin response factor 4	[more]
AT5G53290.1	2.3e-08	57.14	cytokinin response factor 3	[more]
AT4G23750.1	1.6e-06	53.70	cytokinin response factor 2	[more]
AT4G23750.2	1.6e-06	53.70	cytokinin response factor 2	[more]
AT1G71130.1	4.0e-05	47.06	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 15..62
None	No IPR available	PANTHER	PTHR31194:SF137	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF4-LIKE	coord: 15..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g01250.1	Cp4.1LG13g01250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity