Cp4.1LG12g09110 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG12g09110
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING-type E3 ubiquitin transferase
Location	Cp4.1LG12: 5930041 .. 5930529 (+)
RNA-Seq Expression	Cp4.1LG12g09110
Synteny	Cp4.1LG12g09110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGTCTTCTTCATTTGCTCCGGCATTGCCATTATTTGCTCACTGATTATATCCCTCACATTCTTCCATCTCACAATACTAGGATGGTTCAATTGCTGCTGCCATTCACCCGGGACGACCGAGTCGGTTGAGAATATTAAGAATGAAGTATCACATATCATGCAGATCCCAACTGTCACGTACAAGAAAGAAAATGAGAATGAAGAAACTAATACTGAAAGTGATTGTGTTTTGTGCTTGTCACCTTTTGAAGATGGGGAATGCATACGGCAGCTTCCCAGCTGCAACCATGTCTTTCATGCTTCGTGTTTCGACGTATGGCTCTCTTCACATTCAGAGTGCCCACTCTGTCGGACTCCAGTCCACCGTGTAGCTTGTCGGACTCCAGAGGCGGTGATTTCTCAGGTAGTAGACATTAACAGTCTCCAGATTGAGCTTTCTCCTCATGTAATTAAGAGCGAAGCGTGGCCAGAAAACATGGTTTAA

mRNA sequence

ATGTCCGTCTTCTTCATTTGCTCCGGCATTGCCATTATTTGCTCACTGATTATATCCCTCACATTCTTCCATCTCACAATACTAGGATGGTTCAATTGCTGCTGCCATTCACCCGGGACGACCGAGTCGGTTGAGAATATTAAGAATGAAGTATCACATATCATGCAGATCCCAACTGTCACGTACAAGAAAGAAAATGAGAATGAAGAAACTAATACTGAAAGTGATTGTGTTTTGTGCTTGTCACCTTTTGAAGATGGGGAATGCATACGGCAGCTTCCCAGCTGCAACCATGTCTTTCATGCTTCGTGTTTCGACGTATGGCTCTCTTCACATTCAGAGTGCCCACTCTGTCGGACTCCAGTCCACCGTGTAGCTTGTCGGACTCCAGAGGCGGTGATTTCTCAGGTAGTAGACATTAACAGTCTCCAGATTGAGCTTTCTCCTCATGTAATTAAGAGCGAAGCGTGGCCAGAAAACATGGTTTAA

Coding sequence (CDS)

ATGTCCGTCTTCTTCATTTGCTCCGGCATTGCCATTATTTGCTCACTGATTATATCCCTCACATTCTTCCATCTCACAATACTAGGATGGTTCAATTGCTGCTGCCATTCACCCGGGACGACCGAGTCGGTTGAGAATATTAAGAATGAAGTATCACATATCATGCAGATCCCAACTGTCACGTACAAGAAAGAAAATGAGAATGAAGAAACTAATACTGAAAGTGATTGTGTTTTGTGCTTGTCACCTTTTGAAGATGGGGAATGCATACGGCAGCTTCCCAGCTGCAACCATGTCTTTCATGCTTCGTGTTTCGACGTATGGCTCTCTTCACATTCAGAGTGCCCACTCTGTCGGACTCCAGTCCACCGTGTAGCTTGTCGGACTCCAGAGGCGGTGATTTCTCAGGTAGTAGACATTAACAGTCTCCAGATTGAGCTTTCTCCTCATGTAATTAAGAGCGAAGCGTGGCCAGAAAACATGGTTTAA

Protein sequence

MSVFFICSGIAIICSLIISLTFFHLTILGWFNCCCHSPGTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESDCVLCLSPFEDGECIRQLPSCNHVFHASCFDVWLSSHSECPLCRTPVHRVACRTPEAVISQVVDINSLQIELSPHVIKSEAWPENMV

Homology

[Close]

BLAST of Cp4.1LG12g09110 vs. ExPASy Swiss-Prot
Match: Q9LUZ9 (RING-H2 finger protein ATL63 OS=Arabidopsis thaliana OX=3702 GN=ATL63 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-15
Identity = 44/95 (46.32%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 28  LGWFNCCCHSPGTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESDCVLCLSPFEDG 87
           LG F+    SP  T + ++   + S I  IP   Y +ENE EE + E +CV+CL  +E G
Sbjct: 91  LGGFDDGVSSPAATATRDDKGLDSSVISSIPLFVY-EENEEEE-DEEEECVICLGLWEAG 150

Query: 88  ECIRQLPSCNHVFHASCFDVWLSSHSECPLCRTPV 123
           +  R+L +C H FH  C D+WLSSHS CPLCR+PV
Sbjct: 151 DFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPV 183

[Close]

BLAST of Cp4.1LG12g09110 vs. ExPASy Swiss-Prot
Match: Q8LFY8 (RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 3.3e-14
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 75  SDCVLCLSPFEDGECIRQLPSCNHVFHASCFDVWLSSHSECPLCRTPVHRVACRTP 131
           +DC +CL+ FE+ E +R LP CNH FH SC D WLSSH+ CPLCR  +  ++  TP
Sbjct: 175 TDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTP 230

[Close]

BLAST of Cp4.1LG12g09110 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.6e-14
Identity = 38/84 (45.24%), Postives = 46/84 (54.76%), Query Frame = 0


Query: 57  IPTVTYKKENENEETNTESDCVLCLSPFEDGECIRQLPSCNHVFHASCFDVWLSSHSECP 116
           I ++T  K    +     SDC +CLS FE+ E +R LP CNH FH  C D WL SHS CP
Sbjct: 122 IKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCP 181

Query: 117 LCRTPVHRVACRTPEAVISQVVDI 141
           LCR  V  V    P A + Q V +
Sbjct: 182 LCRAFVTGV--NNPTASVGQNVSV 203

[Close]

BLAST of Cp4.1LG12g09110 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-13
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 52  SHIMQIPTVTYKK-----------ENENEETNTESDCVLCLSPFEDGECIRQLPSCNHVF 111
           S I  IP   +KK           E E EE     +C +CLS F+D E +R +P+C+H+F
Sbjct: 102 SVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLF 161

Query: 112 HASCFDVWLSSHSECPLCRTPVHRVACRT 130
           H  C DVWL +++ CPLCRT   RV+C T
Sbjct: 162 HIDCIDVWLQNNANCPLCRT---RVSCDT 187

[Close]

BLAST of Cp4.1LG12g09110 vs. ExPASy Swiss-Prot
Match: Q9M0R5 (Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana OX=3702 GN=ATL36 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-13
Identity = 39/103 (37.86%), Postives = 51/103 (49.51%), Query Frame = 0


Query: 28  LGWFNCCCHSPGTTESVENIKNEVSH-----------IMQIPTVTYKKENENEETNTESD 87
           LG  +CC H     E +     +V H           I   PT  Y +    +      +
Sbjct: 63  LGMVSCCLHCIFYREEIGAAGQDVLHSRARRGLEKEVIESFPTFLYSEVKGLKIGKGGVE 122

Query: 88  CVLCLSPFEDGECIRQLPSCNHVFHASCFDVWLSSHSECPLCR 120
           C +CLS FED E +R +P C+H FHA+C DVWLSS S CP+CR
Sbjct: 123 CAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCR 165

[Close]

BLAST of Cp4.1LG12g09110 vs. NCBI nr
Match: KAG7013994.1 (E3 ubiquitin-protein ligase ATL6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 321 bits (822), Expect = 1.86e-110
Identity = 154/162 (95.06%), Postives = 157/162 (96.91%), Query Frame = 0


Query: 1   MSVFFICSGIAIICSLIISLTFFHLTILGWFNCCCHSPGTTESVENIKNEVSHIMQIPTV 60
           MSVFFICSGIAIICSLIISLTFFHLTILGWFNCCCHSP TTESVENIKNEVSHIMQIPTV
Sbjct: 1   MSVFFICSGIAIICSLIISLTFFHLTILGWFNCCCHSPRTTESVENIKNEVSHIMQIPTV 60

Query: 61  TYKKENENEETNTESDCVLCLSPFEDGECIRQLPSCNHVFHASCFDVWLSSHSECPLCRT 120
           TYKKENENEETNTES+CVLCLSPFEDGECIRQLPSCNHVFHASC DVWLSSHSECPLCRT
Sbjct: 61  TYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRT 120

Query: 121 PVHRVACRTPEAVISQVVDINSLQIELSPHVIKSEAWPENMV 162
           PVH VACRT EAVI QVVDINSLQIELSPHVI+S+AWPENMV
Sbjct: 121 PVHHVACRTAEAVICQVVDINSLQIELSPHVIRSKAWPENMV 162

[Close]

BLAST of Cp4.1LG12g09110 vs. NCBI nr
Match: KAA0059407.1 (E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa] >TYK03920.1 E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa])

HSP 1 Score: 197 bits (500), Expect = 2.03e-60
Identity = 104/167 (62.28%), Postives = 124/167 (74.25%), Query Frame = 0


Query: 1   MSVFFICSGIAIICSLIISLTFFHLTILGWFNCCCHSPGTTESVENIKNEVSHIMQIPTV 60
           MSV FICSG+AI+CSL I+L FF+L +LGWFNCCC SP  T+ V+NIK E S++++I T+
Sbjct: 68  MSVLFICSGVAIVCSLFIALLFFNLAMLGWFNCCCRSPEMTD-VKNIKYEDSNLIKISTI 127

Query: 61  TYKKENENEETNTESDCVLCLSPFEDGECIRQLPSCNHVFHASCFDVWLSSHSECPLCRT 120
            YKKEN++EETN  S+C LCLSP EDGECIR+L +CNHVFHASC DVWL SHS CPLCRT
Sbjct: 128 MYKKENKSEETNIPSECALCLSPCEDGECIRKLLACNHVFHASCIDVWLYSHSNCPLCRT 187

Query: 121 PVHRVACRTPE----AVISQVVDIN-SLQIELSPHVIKSEAWPENMV 162
            +  VAC   E     V S VV IN SLQI LS H  +  +  ENMV
Sbjct: 188 TLDHVACNNGELTSGVVNSHVVVINNSLQIGLSLHESRRGSPSENMV 233

[Close]

BLAST of Cp4.1LG12g09110 vs. NCBI nr
Match: KAE8646506.1 (hypothetical protein Csa_015876 [Cucumis sativus])

HSP 1 Score: 212 bits (539), Expect = 3.21e-60
Identity = 111/164 (67.68%), Postives = 127/164 (77.44%), Query Frame = 0


Query: 1    MSVFFICSGIAIICSLIISLTFFHLT-ILGWFNCCCHSPGTTESVENIKNEVSHIMQIPT 60
            MSV FICSGIAIICSL I+L FF+LT ILGWFNCCC SP  T  V+NIK E S++M+I T
Sbjct: 914  MSVLFICSGIAIICSLSIALLFFNLTMILGWFNCCCRSPEMTN-VKNIKYEDSNLMKIST 973

Query: 61   VTYKKENENEETNTESDCVLCLSPFEDGECIRQLPSCNHVFHASCFDVWLSSHSECPLCR 120
            + YKKEN++EETN  S+C LCLSP+EDGECIR+L +CNHVFHASC D+WL SHS CPLCR
Sbjct: 974  IMYKKENKSEETNITSECALCLSPYEDGECIRELLACNHVFHASCIDIWLYSHSNCPLCR 1033

Query: 121  TPVHRVACRTPEAVISQVVDI-NSLQIELSPHVIKSEAWPENMV 162
            TP+ RVAC   E     VV I NSLQIE S H  + EA PENMV
Sbjct: 1034 TPLGRVACINGELTSGVVVAISNSLQIETSTHGSQREASPENMV 1076

[Close]

BLAST of Cp4.1LG12g09110 vs. NCBI nr
Match: EEF41012.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 103 bits (258), Expect = 7.87e-25
Identity = 49/123 (39.84%), Postives = 73/123 (59.35%), Query Frame = 0


Query: 9   GIAIICSLIISLTFFHLTILGWFNCCCHSPGTTESVENIKNEVSHIM------QIPTVTY 68
           G+ +  ++ I+   + + +LGW     H   + + + N  +  S +          T  Y
Sbjct: 7   GLVLFGTIAIAFAVYTMVMLGWRT--SHHQLSRQELSNPADHKSSVSLNLNPYSASTFKY 66

Query: 69  KKENENEETNTESDCVLCLSPFEDGECIRQLPSCNHVFHASCFDVWLSSHSECPLCRTPV 125
           KK  EN E  +E++C++CLS FED E +RQLP C H FHASC D+W+ SHS+CPLCRTP+
Sbjct: 67  KKRIENSEVPSETECIVCLSDFEDDEYVRQLPRCKHSFHASCIDMWVYSHSDCPLCRTPI 126

[Close]

BLAST of Cp4.1LG12g09110 vs. NCBI nr
Match: XP_020219623.1 (E3 ubiquitin-protein ligase RING1-like [Cajanus cajan])

HSP 1 Score: 102 bits (253), Expect = 3.57e-24
Identity = 49/118 (41.53%), Postives = 74/118 (62.71%), Query Frame = 0


Query: 9   GIAIICSLIISLTFFHLTILGWFNCCCHSPGTTESVENIKNEVSHIMQIPTVTYKKENEN 68
           GI II +L+IS TFF LT+LGW     H P    +  +  ++ S  M + + +   + + 
Sbjct: 6   GILIIGALVISFTFFTLTMLGWCTRTSHMPSLPTTGTSFDDKFSPCMSLESHSITFQYKA 65

Query: 69  EETN-TESDCVLCLSPFEDGECIRQLPSCNHVFHASCFDVWLSSHSECPLCRTPVHRV 125
            E N  +++CV+CL+PFE+ + +R+L +C H+FH SC D WL SHS CPLCRT + +V
Sbjct: 66  AEGNINQNECVICLTPFEEEDSVRKLHTCKHIFHTSCIDKWLGSHSGCPLCRTQIDKV 123

[Close]

BLAST of Cp4.1LG12g09110 vs. ExPASy TrEMBL
Match: A0A0A0KAX6 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_7G450560 PE=3 SV=1)

HSP 1 Score: 212 bits (539), Expect = 1.24e-67
Identity = 111/164 (67.68%), Postives = 127/164 (77.44%), Query Frame = 0


Query: 1   MSVFFICSGIAIICSLIISLTFFHLT-ILGWFNCCCHSPGTTESVENIKNEVSHIMQIPT 60
           MSV FICSGIAIICSL I+L FF+LT ILGWFNCCC SP  T  V+NIK E S++M+I T
Sbjct: 1   MSVLFICSGIAIICSLSIALLFFNLTMILGWFNCCCRSPEMTN-VKNIKYEDSNLMKIST 60

Query: 61  VTYKKENENEETNTESDCVLCLSPFEDGECIRQLPSCNHVFHASCFDVWLSSHSECPLCR 120
           + YKKEN++EETN  S+C LCLSP+EDGECIR+L +CNHVFHASC D+WL SHS CPLCR
Sbjct: 61  IMYKKENKSEETNITSECALCLSPYEDGECIRELLACNHVFHASCIDIWLYSHSNCPLCR 120

Query: 121 TPVHRVACRTPEAVISQVVDI-NSLQIELSPHVIKSEAWPENMV 162
           TP+ RVAC   E     VV I NSLQIE S H  + EA PENMV
Sbjct: 121 TPLGRVACINGELTSGVVVAISNSLQIETSTHGSQREASPENMV 163

[Close]

BLAST of Cp4.1LG12g09110 vs. ExPASy TrEMBL
Match: A0A5D3BXP3 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001170 PE=3 SV=1)

HSP 1 Score: 197 bits (500), Expect = 9.81e-61
Identity = 104/167 (62.28%), Postives = 124/167 (74.25%), Query Frame = 0


Query: 1   MSVFFICSGIAIICSLIISLTFFHLTILGWFNCCCHSPGTTESVENIKNEVSHIMQIPTV 60
           MSV FICSG+AI+CSL I+L FF+L +LGWFNCCC SP  T+ V+NIK E S++++I T+
Sbjct: 68  MSVLFICSGVAIVCSLFIALLFFNLAMLGWFNCCCRSPEMTD-VKNIKYEDSNLIKISTI 127

Query: 61  TYKKENENEETNTESDCVLCLSPFEDGECIRQLPSCNHVFHASCFDVWLSSHSECPLCRT 120
            YKKEN++EETN  S+C LCLSP EDGECIR+L +CNHVFHASC DVWL SHS CPLCRT
Sbjct: 128 MYKKENKSEETNIPSECALCLSPCEDGECIRKLLACNHVFHASCIDVWLYSHSNCPLCRT 187

Query: 121 PVHRVACRTPE----AVISQVVDIN-SLQIELSPHVIKSEAWPENMV 162
            +  VAC   E     V S VV IN SLQI LS H  +  +  ENMV
Sbjct: 188 TLDHVACNNGELTSGVVNSHVVVINNSLQIGLSLHESRRGSPSENMV 233

[Close]

BLAST of Cp4.1LG12g09110 vs. ExPASy TrEMBL
Match: A0A2N9J1M7 (RING-type E3 ubiquitin transferase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58113 PE=3 SV=1)

HSP 1 Score: 108 bits (269), Expect = 7.14e-27
Identity = 54/122 (44.26%), Postives = 77/122 (63.11%), Query Frame = 0


Query: 9   GIAIICSLIISLTFFHLT--ILGWFNCCCHSPGTTESVENIKNEVSHI--MQIPTVTYKK 68
           GI +I S+II+L F++L   +L  +    H P T   V+    + S +  + + T  YKK
Sbjct: 7   GIVVIGSMIIALVFYNLVMFVLRAYKHLLHPPTTIGPVKEKGFDSSRLNPLSVTTFKYKK 66

Query: 69  ENENEETNTESDCVLCLSPFEDGECIRQLPSCNHVFHASCFDVWLSSHSECPLCRTPVHR 126
             EN E  +E++CV+CLS FED EC+ +LP C H FH  C D+WL SHS+CPLCRTP+ R
Sbjct: 67  GAENIEAASETECVVCLSSFEDDECVSRLPQCKHSFHTPCIDMWLYSHSDCPLCRTPIDR 126

[Close]

BLAST of Cp4.1LG12g09110 vs. ExPASy TrEMBL
Match: B9S5S5 (RING-type E3 ubiquitin transferase OS=Ricinus communis OX=3988 GN=RCOM_0653430 PE=3 SV=1)

HSP 1 Score: 103 bits (258), Expect = 3.81e-25
Identity = 49/123 (39.84%), Postives = 73/123 (59.35%), Query Frame = 0


Query: 9   GIAIICSLIISLTFFHLTILGWFNCCCHSPGTTESVENIKNEVSHIM------QIPTVTY 68
           G+ +  ++ I+   + + +LGW     H   + + + N  +  S +          T  Y
Sbjct: 7   GLVLFGTIAIAFAVYTMVMLGWRT--SHHQLSRQELSNPADHKSSVSLNLNPYSASTFKY 66

Query: 69  KKENENEETNTESDCVLCLSPFEDGECIRQLPSCNHVFHASCFDVWLSSHSECPLCRTPV 125
           KK  EN E  +E++C++CLS FED E +RQLP C H FHASC D+W+ SHS+CPLCRTP+
Sbjct: 67  KKRIENSEVPSETECIVCLSDFEDDEYVRQLPRCKHSFHASCIDMWVYSHSDCPLCRTPI 126

[Close]

BLAST of Cp4.1LG12g09110 vs. ExPASy TrEMBL
Match: A0A067L9H5 (RING-type E3 ubiquitin transferase OS=Jatropha curcas OX=180498 GN=JCGZ_24713 PE=3 SV=1)

HSP 1 Score: 101 bits (251), Expect = 5.04e-24
Identity = 56/120 (46.67%), Postives = 72/120 (60.00%), Query Frame = 0


Query: 38  PGTTESVENIKNEVSHIMQ---IPTVTYKKENENEETNTESDCVLCLSPFEDGECIRQLP 97
           PG T   E  K+ VS  +      T  YKKE+EN E   E++CV+CLS FED E +R+L 
Sbjct: 38  PGLTSPAEP-KDSVSLNLSSYSASTFKYKKESENPEAPPETECVVCLSTFEDEEYVRRLS 97

Query: 98  SCNHVFHASCFDVWLSSHSECPLCRTPVHRV-----ACRTPEAVISQVVDINSLQIELSP 149
            C H FHA C D+WL SHS+CPLCRTP+HR+        T  ++   V+D +S   ELSP
Sbjct: 98  DCRHSFHAPCIDMWLYSHSDCPLCRTPIHRLDSDDGGLTTENSIEGLVLDSSS---ELSP 153

[Close]

BLAST of Cp4.1LG12g09110 vs. TAIR 10
Match: AT5G58580.1 (TOXICOS EN LEVADURA 63 )

HSP 1 Score: 84.3 bits (207), Expect = 9.6e-17
Identity = 44/95 (46.32%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 28  LGWFNCCCHSPGTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESDCVLCLSPFEDG 87
           LG F+    SP  T + ++   + S I  IP   Y +ENE EE + E +CV+CL  +E G
Sbjct: 91  LGGFDDGVSSPAATATRDDKGLDSSVISSIPLFVY-EENEEEE-DEEEECVICLGLWEAG 150

Query: 88  ECIRQLPSCNHVFHASCFDVWLSSHSECPLCRTPV 123
           +  R+L +C H FH  C D+WLSSHS CPLCR+PV
Sbjct: 151 DFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPV 183

[Close]

BLAST of Cp4.1LG12g09110 vs. TAIR 10
Match: AT1G72220.1 (RING/U-box superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-15
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 75  SDCVLCLSPFEDGECIRQLPSCNHVFHASCFDVWLSSHSECPLCRTPVHRVACRTP 131
           +DC +CL+ FE+ E +R LP CNH FH SC D WLSSH+ CPLCR  +  ++  TP
Sbjct: 175 TDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTP 230

[Close]

BLAST of Cp4.1LG12g09110 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 78.2 bits (191), Expect = 6.8e-15
Identity = 38/84 (45.24%), Postives = 46/84 (54.76%), Query Frame = 0


Query: 57  IPTVTYKKENENEETNTESDCVLCLSPFEDGECIRQLPSCNHVFHASCFDVWLSSHSECP 116
           I ++T  K    +     SDC +CLS FE+ E +R LP CNH FH  C D WL SHS CP
Sbjct: 122 IKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCP 181

Query: 117 LCRTPVHRVACRTPEAVISQVVDI 141
           LCR  V  V    P A + Q V +
Sbjct: 182 LCRAFVTGV--NNPTASVGQNVSV 203

[Close]

BLAST of Cp4.1LG12g09110 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-14
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 52  SHIMQIPTVTYKK-----------ENENEETNTESDCVLCLSPFEDGECIRQLPSCNHVF 111
           S I  IP   +KK           E E EE     +C +CLS F+D E +R +P+C+H+F
Sbjct: 102 SVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLF 161

Query: 112 HASCFDVWLSSHSECPLCRTPVHRVACRT 130
           H  C DVWL +++ CPLCRT   RV+C T
Sbjct: 162 HIDCIDVWLQNNANCPLCRT---RVSCDT 187

[Close]

BLAST of Cp4.1LG12g09110 vs. TAIR 10
Match: AT4G09120.1 (RING/U-box superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-14
Identity = 39/103 (37.86%), Postives = 51/103 (49.51%), Query Frame = 0


Query: 28  LGWFNCCCHSPGTTESVENIKNEVSH-----------IMQIPTVTYKKENENEETNTESD 87
           LG  +CC H     E +     +V H           I   PT  Y +    +      +
Sbjct: 63  LGMVSCCLHCIFYREEIGAAGQDVLHSRARRGLEKEVIESFPTFLYSEVKGLKIGKGGVE 122

Query: 88  CVLCLSPFEDGECIRQLPSCNHVFHASCFDVWLSSHSECPLCR 120
           C +CLS FED E +R +P C+H FHA+C DVWLSS S CP+CR
Sbjct: 123 CAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCR 165

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g09110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUZ9	1.3e-15	46.32	RING-H2 finger protein ATL63 OS=Arabidopsis thaliana OX=3702 GN=ATL63 PE=2 SV=1	[more]
Q8LFY8	3.3e-14	53.57	RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2	[more]
Q9LF64	9.6e-14	45.24	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9LSW9	1.6e-13	42.70	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
Q9M0R5	2.1e-13	37.86	Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana OX=3702 GN=ATL36 P...	[more]

BLAST of Cp4.1LG12g09110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013994.1	1.86e-110	95.06	E3 ubiquitin-protein ligase ATL6, partial [Cucurbita argyrosperma subsp. argyros...	[more]
KAA0059407.1	2.03e-60	62.28	E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa] >TYK03920.1 E3...	[more]
KAE8646506.1	3.21e-60	67.68	hypothetical protein Csa_015876 [Cucumis sativus]	[more]
EEF41012.1	7.87e-25	39.84	conserved hypothetical protein [Ricinus communis]	[more]
XP_020219623.1	3.57e-24	41.53	E3 ubiquitin-protein ligase RING1-like [Cajanus cajan]	[more]

BLAST of Cp4.1LG12g09110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAX6	1.24e-67	67.68	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_7G450560 PE...	[more]
A0A5D3BXP3	9.81e-61	62.28	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A2N9J1M7	7.14e-27	44.26	RING-type E3 ubiquitin transferase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58113...	[more]
B9S5S5	3.81e-25	39.84	RING-type E3 ubiquitin transferase OS=Ricinus communis OX=3988 GN=RCOM_0653430 P...	[more]
A0A067L9H5	5.04e-24	46.67	RING-type E3 ubiquitin transferase OS=Jatropha curcas OX=180498 GN=JCGZ_24713 PE...	[more]

BLAST of Cp4.1LG12g09110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58580.1	9.6e-17	46.32	TOXICOS EN LEVADURA 63	[more]
AT1G72220.1	2.4e-15	53.57	RING/U-box superfamily protein	[more]
AT5G17600.1	6.8e-15	45.24	RING/U-box superfamily protein	[more]
AT5G43420.1	1.2e-14	42.70	RING/U-box superfamily protein	[more]
AT4G09120.1	1.5e-14	37.86	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 77..118 e-value: 2.5E-4 score: 30.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 76..119 e-value: 5.1E-13 score: 49.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 77..119 score: 11.899158
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 35..124 e-value: 1.7E-20 score: 74.5
None	No IPR available	PANTHER	PTHR45676:SF84	RING-H2 FINGER PROTEIN ATL52-LIKE	coord: 7..127
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 54..125
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 7..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g09110.1	Cp4.1LG12g09110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane