Cp4.1LG12g08390 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG12g08390
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Location	Cp4.1LG12: 6509859 .. 6513504 (+)
RNA-Seq Expression	Cp4.1LG12g08390
Synteny	Cp4.1LG12g08390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGCGAAGAACATAGGGTTTTCAACCAAACCCAGATGACTCATTATCATCCAACAAAGTTGGAGAATTTCCAACACCAAATCTTCAACAACAATCCAAACTTTGCTCACTTTTCATGTAATACTAACAACCCACATCACGGGAGCAACCGTGTCGTCTCCGGCGGTGGCAGTGGCGCCCCCGACCCCGACCGCTCGTTGGAGGTGAGCCACTTCCTTGGCTTTGCTTTTGTTCTCAAATTGTAACATTCTCCCTTACTTGAACAGTCGAATCGCTCCGCTGTCGTCGGCGGTGGCGCGTGTAAGAAAGCTAGGGTTCATCCGCCATCTTCAACCCAACCACCTTTAAAGGTAGATTTTACTTCAAAACTTCAATTTATGAAAGGTTTATGAAAAGTTTGCATCTTTATGATCGAATAATAACAGGTGAGGAAGGAGAAGCTCGTAGATCGAATTACAGCTCTTCACCAAATCGTCTCTCCATTCGGAAAGGTAAAATTTAGGGTTTAGGTTAAATTTACATAAAATATCTTAGTTTTTACTATGTTTCACTCAATTTTAAAAATTTTCATTTTTACCCGTAAATCAATTTACGAGAATAATGTTATAAATGATATTACATACGTTTTTCAATTTTTACACGTTACCGAAACTTACCTCAGAGTTCACGGGTATCGGTATAATTTAACTATTACTTTATTACTACAGTAATTTCCTTCTAAACACTAACAACTTCAATAAATAAATAACTAACTAAATAAATAAATTAAAAAAAAATATATATATAAATTCCTTTTCCCTTCCCTTTTGTAGACTGATACTGCCTCGGTGCTGTCAGAAGCTATTGGGTATATCAGATTTCTTCAGGGACAAATTGAGGTAAAAAGCCTATTTTTTTTTACCCATTTACAGTTTTAAGCTCTGTAAAAGAGACCCTATTATTATTATGTAAGTGGAGATTGAGAGGTAAAAAAGGCACAGTAAAATCTCATGCTTTTCTCAACATTCTTTTCTCTGGATCTTCATAGCTTTCTCTCCTTTTTTGACTGGCAGGCTCTTAGTTACCCTTATCAGCGAAGTGCTCCAAAAGAGCTCACGAATTCACAGCCTCTGGTAAGTATATACTAAAGCTTAAAAGTTTCATGCATTCGNGTCACTTATAAACCCATGATCTTCCACTAAATTAACCAATGTGGGACACTCCCAATCCCAATAATCCTCAACAATCCTCCCCTCGAACAAAGCACACTATAAGCCTCCCCTGAGGCTTATGGAGCTCTCGAATAGCCTCCCCTTAATTGAGGCTCGACTCCTTTCTCTGGAGCCCTCGAACAAAGTACACCATTTGTTCGACACTTTAGTCACTTTTGACTACACCTTCGAGGCTCGCCATTCTTTGTTCGATATTTGAGGATTTTATTGGCATGGTTAAGTTTAGGGCATGGCTCTGATACCATGTTAGGAATCACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGGAGATAGTATTCCTCACTTATAAACCCATGATCTTCCACTAAATTAACCAATGTGGGACACTCCCAATCCCAATAATCCTCAACATATATATATGTATATATATATATATTTATTTATATATATATATTTATTTATTTATATCTATATTTATTTATATCTATATTTATTTATATATATATATATATATAAATTCCTTTTCCCTTTCTTTTTGCNTATAAATTCCTTTTCCCTTCCCTTTTGCAGACTGATACTGCCTCGGTGCTGTCAGAAGCTATTGGGTATATCAGATTTCTTCGGGGACAAATTGAGGTAAAAAGCCTATTTTTTTTACCCATTTACAGTTTTAAGCTCTGTAAAAGAGACCCTATTATTATTATGTAAGTGGAGATTGAGAGGTAAAAAAGGCACAGTAAAATCTCATGCTTTTCTCAACATTCTTTTCTTTGGATCTTCATAGCTTTCTCTCCTTTTTTGACTGGCAGGCTCTTAGTTACCCTTATCTGCGAAGTGCTCCAAAAGAGCTCACGAATTCACAGCCTCTTGTAAGTATATACTAAAGCTTAAACAGTTTCATGCATTCGAGGGCGTTCGTATGAATATCGACGAGTGATATCTTTTTTACTAATTTTTTTTTCAAAATTTCGACTTCTGGGTTGTGATGTTCGAGAGATTATTTAAAATGGGTCGGTTTTCTGTTTGGTGAAAAAGCTCATACCTTTTCATAAGTTGACGAGTAAATTTTTTAAAAAAATTTTAACTTTTGGATTAATAATCTTTAACGAGTAATATCTTTTTTACTAATGTTTGTTTCAAAATTTTGACTTCTGGGTTGTGATGTTCGAGAGCTTATTTACAACGGGTCGGTTTTCTTTTTTGTGACAAAGTTCATACGTTTTCATAAATTGACGAGTAATGTTTTTAACTTTTGGTTTAATGTTCTTTGAAGAGTAATATGTGATTAAAAAAAAAATGGATTTTTGGGTTATGATGCTTGTGAGCTTATTTAAAAAGGGTTTTTTTTCTCTAATTTTTAAAAATATTTAACTTGATAACACTGAAGATCAATGACTCGTTTAAGAAGGGTTAACTTTGGTTTAATTGATTCGAGTCATTTTTACGAGTTTTTTTTAGGGTTTTTTTCCTAAATATCGACCGACGTTTTTGCAAATGATAGATTTTTGACATCATAAATCATAAAATGAATCAAAATTAAAAAAAAAAATAATAATAAAGAAGAAACTAAAGGGAATGAAAAGGAATAAGGTTCTTAGCTTTATATTCACCTTTAAATACTTGCTCTCGATTGTTAAAGCGTTCATTTCACTTTAGTCTTTATTCTTTAAAAAGTTTCAATTTCAAACCCTTATCTTTTTGTACTTTTCCACTATATCTTTCTCGTTATTATCGTCAAAATTGATAGAATCCAATTTTTTTCTAAAAAGTTAGCAAGATTTCAAAATTTTCTTCATATGGGTGTTCATGGGTTGAGTCGGGTCAAGTCGAGACATTTTTAGACCTAACTTAATTGTTCGGTTTGTAAATTTTTTTAACCTAAACAACTCTCGTTAAATAATGAGTCCAGCCTAACCCAACTATAAATTTGTACGGTTTGGTTGGTTTGAGTTGTTCCAATCATTTATTTAAATTTTTATATTTAATAAAAAAATAAAATGTTAATTTTTAAAATATCTATTTATTCATTATATATATATATATATATATTATTTTAGTATAATTCACGAACCAACCAACTTATAAAGTTTTCATTTATTTGAATTCAACCAGATTGAAGTAACTTTATAACCCAACTCAAATCAAAACATACAAATTGGGTCGGGTTTATTGAATTTTTCGAACACTTCTATTACTTTTCTACACGAACAGCTACCGAACGCTTTTCTTTCTAAAAAATTAAAGTCGATCATATTTTATATGATATAAATGGGTTAAATTAATATGTTATTATTAGGGAGATGAAAGGAAAAGGCAAGAGAAGCCATTGAAGGAGCTGAGGAGTAGAGGGCTTTGTTTGGTACCACTCTCATGCACACACCTAGTTGGAGCTGATACCACTTATGGAACTGGCTTT

mRNA sequence

AGGCGAAGAACATAGGGTTTTCAACCAAACCCAGATGACTCATTATCATCCAACAAAGTTGGAGAATTTCCAACACCAAATCTTCAACAACAATCCAAACTTTGCTCACTTTTCATGTAATACTAACAACCCACATCACGGGAGCAACCGTGTCGTCTCCGGCGGTGGCAGTGGCGCCCCCGACCCCGACCGCTCGTTGGAGTCGAATCGCTCCGCTGTCGTCGGCGGTGGCGCGTGTAAGAAAGCTAGGGTTCATCCGCCATCTTCAACCCAACCACCTTTAAAGGTGAGGAAGGAGAAGCTCGTAGATCGAATTACAGCTCTTCACCAAATCACTGATACTGCCTCGGTGCTGTCAGAAGCTATTGGGTATATCAGATTTCTTCAGGGACAAATTGAGGCTCTTAGTTACCCTTATCTGCGAAGTGCTCCAAAAGAGCTCACGAATTCACAGCCTCTTGGAGATGAAAGGAAAAGGCAAGAGAAGCCATTGAAGGAGCTGAGGAGTAGAGGGCTTTGTTTGGTACCACTCTCATGCACACACCTAGTTGGAGCTGATACCACTTATGGAACTGGCTTT

Coding sequence (CDS)

ATGACTCATTATCATCCAACAAAGTTGGAGAATTTCCAACACCAAATCTTCAACAACAATCCAAACTTTGCTCACTTTTCATGTAATACTAACAACCCACATCACGGGAGCAACCGTGTCGTCTCCGGCGGTGGCAGTGGCGCCCCCGACCCCGACCGCTCGTTGGAGTCGAATCGCTCCGCTGTCGTCGGCGGTGGCGCGTGTAAGAAAGCTAGGGTTCATCCGCCATCTTCAACCCAACCACCTTTAAAGGTGAGGAAGGAGAAGCTCGTAGATCGAATTACAGCTCTTCACCAAATCACTGATACTGCCTCGGTGCTGTCAGAAGCTATTGGGTATATCAGATTTCTTCAGGGACAAATTGAGGCTCTTAGTTACCCTTATCTGCGAAGTGCTCCAAAAGAGCTCACGAATTCACAGCCTCTTGGAGATGAAAGGAAAAGGCAAGAGAAGCCATTGAAGGAGCTGAGGAGTAGAGGGCTTTGTTTGGTACCACTCTCATGCACACACCTAGTTGGAGCTGATACCACTTATGGAACTGGCTTT

Protein sequence

MTHYHPTKLENFQHQIFNNNPNFAHFSCNTNNPHHGSNRVVSGGGSGAPDPDRSLESNRSAVVGGGACKKARVHPPSSTQPPLKVRKEKLVDRITALHQITDTASVLSEAIGYIRFLQGQIEALSYPYLRSAPKELTNSQPLGDERKRQEKPLKELRSRGLCLVPLSCTHLVGADTTYGTGF

Homology

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BLAST of Cp4.1LG12g08390 vs. ExPASy Swiss-Prot
Match: Q8S3D1 (Transcription factor bHLH68 OS=Arabidopsis thaliana OX=3702 GN=BHLH68 PE=1 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 1.0e-27
Identity = 89/195 (45.64%), Postives = 102/195 (52.31%), Query Frame = 0


Query: 18  NNNPNFAHFSCNTNNPHHGSNRVVSGGGSGAPDPDRSLESNRSAVVGGGACKKARVHPPS 77
           NNN N   FS N N  H    R           PDRS E N S  +GG   KK R+ P  
Sbjct: 206 NNNNNMLDFSSNHNGLHLSEGR--------HTPPDRSSECN-SLEIGGSTNKKPRLQPSP 265

Query: 78  STQPPLKVRKEKLVDRITALHQI------TDTASVLSEAIGYIRFLQGQIEALSYPYLRS 137
           S+Q  LKVRKEKL  RI ALHQ+      TDTASVLSEAIGYIRFLQ QIEALS+PY  +
Sbjct: 266 SSQSTLKVRKEKLGGRIAALHQLVSPFGKTDTASVLSEAIGYIRFLQSQIEALSHPYFGT 325

Query: 138 A----------------------PKELTNSQPL---------GDERKRQEKPLKELRSRG 176
                                  P +L N Q +          D +   E+P K+LRSRG
Sbjct: 326 TASGNMRHQQHLQGDRSCIFPEDPGQLVNDQCMKRRGASSSSTDNQNASEEPKKDLRSRG 385

[Close]

BLAST of Cp4.1LG12g08390 vs. ExPASy Swiss-Prot
Match: Q9SFZ3 (Transcription factor bHLH110 OS=Arabidopsis thaliana OX=3702 GN=BHLH110 PE=2 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 6.3e-22
Identity = 68/125 (54.40%), Postives = 78/125 (62.40%), Query Frame = 0


Query: 64  GGGACKKARVHPPSSTQPPLKVRKEKLVDRITALHQI------TDTASVLSEAIGYIRFL 123
           G  A KK RV   SS  PP KVRKEKL DRI AL Q+      TDTASVL EAIGYI+FL
Sbjct: 313 GENASKKPRVESRSSC-PPFKVRKEKLGDRIAALQQLVSPFGKTDTASVLMEAIGYIKFL 372

Query: 124 QGQIEALSYPYLR-SAPKELTNSQPLGDERKRQEKPLKELRSRGLCLVPLSCTHLVGADT 182
           Q QIE LS PY+R S  +    SQ +   ++  E+  ++LRSRGLCLVPLSC   V  D 
Sbjct: 373 QSQIETLSVPYMRASRNRPGKASQLVSQSQEGDEEETRDLRSRGLCLVPLSCMTYVTGDG 432

[Close]

BLAST of Cp4.1LG12g08390 vs. ExPASy Swiss-Prot
Match: Q7XHI5 (Transcription factor bHLH133 OS=Arabidopsis thaliana OX=3702 GN=BHLH133 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-19
Identity = 81/223 (36.32%), Postives = 111/223 (49.78%), Query Frame = 0


Query: 4   YHPTKLENFQHQIFNNNPNFAHFSCNTN------NPHHGSNRVVSGGGSGAPDPDRSL-- 63
           Y   +++N++ Q+  +  +    S N N      +P+   N+  +   +   D + ++  
Sbjct: 126 YQAKRIQNWEEQVLRHQASMKQESSNNNSYGIMSSPNSPPNKSCATIINTNEDNNNNIHS 185

Query: 64  -----ESNRSAVVGGG-ACKKARVHPPSSTQPPLKVRKEKLVDRITALHQI------TDT 123
                E N S ++G   A KK ++  PSS Q  LKVRKEKL  RI +LHQ+      TDT
Sbjct: 186 GLNLSECNSSEMIGSSFANKKPKLQVPSS-QSTLKVRKEKLGGRIASLHQLVSPFGKTDT 245

Query: 124 ASVLSEAIGYIRFLQGQIEALSYPYLRSA---------------------PKELTN---- 176
           ASVLSEAIGYIRFL  QIEALS PY  +                      P +L N    
Sbjct: 246 ASVLSEAIGYIRFLHSQIEALSLPYFGTPSRNNMMHQHAQRNMNGIFPEDPGQLVNEYCM 305

[Close]

BLAST of Cp4.1LG12g08390 vs. ExPASy Swiss-Prot
Match: Q94JL3 (Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-17
Identity = 58/128 (45.31%), Postives = 70/128 (54.69%), Query Frame = 0


Query: 56  ESNRSAVVGGGACKKARVHPPSSTQPPLKVRKEKLVDRITALHQI------TDTASVLSE 115
           ES + A     A KK RV  PS   P  KVRKE L D+IT+L Q+      TDTASVL E
Sbjct: 253 ESLKRAKDNESAAKKPRVTTPSPL-PTFKVRKENLRDQITSLQQLVSPFGKTDTASVLQE 312

Query: 116 AIGYIRFLQGQIEALSYPYLRSAPKELTNSQPLGDERKRQEKPLKELRSRGLCLVPLSCT 175
           AI YI+FL  Q+  LS PY++         Q  G  + + E    ELR  GLCLVP+S T
Sbjct: 313 AIEYIKFLHDQVTVLSTPYMKQGASNQQQQQISGKSKSQDENENHELRGHGLCLVPISST 372

Query: 176 HLVGADTT 178
             V  +TT
Sbjct: 373 FPVANETT 379

[Close]

BLAST of Cp4.1LG12g08390 vs. ExPASy Swiss-Prot
Match: Q8GXT3 (Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.8e-15
Identity = 59/133 (44.36%), Postives = 75/133 (56.39%), Query Frame = 0


Query: 56  ESNRSAVVGGG-----ACKKARVHPPSSTQPPLKVRKEKLVDRITALHQI------TDTA 115
           +S+ + V  GG     A K+A+    S +  P   RKEK+ DRI AL Q+      TD A
Sbjct: 313 DSSSNEVKRGGNDHQPAAKRAKSEAASPS--PAFKRKEKMGDRIAALQQLVSPFGKTDAA 372

Query: 116 SVLSEAIGYIRFLQGQIEALSYPYLRSAPKELTNSQPLGDERKRQEKPLKELRSRGLCLV 175
           SVLSEAI YI+FL  Q+ ALS PY++S             E +  E+P  +LRSRGLCLV
Sbjct: 373 SVLSEAIEYIKFLHQQVSALSNPYMKSGASLQHQQSDHSTELEVSEEP--DLRSRGLCLV 432

Query: 176 PLSCTHLVGADTT 178
           P+S T  V  DTT
Sbjct: 433 PVSSTFPVTHDTT 441

[Close]

BLAST of Cp4.1LG12g08390 vs. NCBI nr
Match: XP_023548439.1 (transcription factor bHLH68-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 355 bits (911), Expect = 9.66e-123
Identity = 180/188 (95.74%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 1   MTHYHPTKLENFQHQIFNNNPNFAHFSCNTNNPHHGSNRVVSGGGSGAPDPDRSLESNRS 60
           MTHYHPTKLENFQHQIFNNNPNFAHFSCNTNNPHHGSNRVVSGGGSGAPDPDRSLESNRS
Sbjct: 36  MTHYHPTKLENFQHQIFNNNPNFAHFSCNTNNPHHGSNRVVSGGGSGAPDPDRSLESNRS 95

Query: 61  AVVGGGACKKARVHPPSSTQPPLKVRKEKLVDRITALHQI------TDTASVLSEAIGYI 120
           AVVGGGACKKARVHPPSSTQPPLKVRKEKLVDRITALHQI      TDTASVLSEAIGYI
Sbjct: 96  AVVGGGACKKARVHPPSSTQPPLKVRKEKLVDRITALHQIVSPFGKTDTASVLSEAIGYI 155

Query: 121 RFLQGQIEALSYPYLRSAPKELTNSQPLGDERKRQEKPLKELRSRGLCLVPLSCTHLVGA 180
           RFLQGQIEALSYPY RSAPKELTNSQPLGDERKRQEKPLKELRSRGLCLVPLSCTHLVGA
Sbjct: 156 RFLQGQIEALSYPYQRSAPKELTNSQPLGDERKRQEKPLKELRSRGLCLVPLSCTHLVGA 215

Query: 181 DTTYGTGF 182
            TTYGTGF
Sbjct: 216 GTTYGTGF 223

[Close]

BLAST of Cp4.1LG12g08390 vs. NCBI nr
Match: XP_022953926.1 (transcription factor bHLH68-like [Cucurbita moschata])

HSP 1 Score: 275 bits (702), Expect = 1.37e-91
Identity = 142/152 (93.42%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 37  SNRVVSGGGSGAPDPDRSLESNRSAVVGGGACKKARVHPPSSTQPPLKVRKEKLVDRITA 96
           SNRVVSG G G PDPDRSLESNRSAVVGGGACKKARVHPPSSTQPPLKVRKEKLVDRITA
Sbjct: 26  SNRVVSGSGGGGPDPDRSLESNRSAVVGGGACKKARVHPPSSTQPPLKVRKEKLVDRITA 85

Query: 97  LHQI------TDTASVLSEAIGYIRFLQGQIEALSYPYLRSAPKELTNSQPLGDERKRQE 156
           LHQI      TDTASVLSEAIGYIRFLQGQIEALSYPYLRSAPKELTNSQPLGDERKRQE
Sbjct: 86  LHQIVSPFGKTDTASVLSEAIGYIRFLQGQIEALSYPYLRSAPKELTNSQPLGDERKRQE 145

Query: 157 KPLKELRSRGLCLVPLSCTHLVGADTTYGTGF 182
           KPLKELRSRGLCLVPLSCTHL+GADTTYGTGF
Sbjct: 146 KPLKELRSRGLCLVPLSCTHLLGADTTYGTGF 177

[Close]

BLAST of Cp4.1LG12g08390 vs. NCBI nr
Match: KAG6575527.1 (Protein THYLAKOID ASSEMBLY 8, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 268 bits (685), Expect = 5.35e-86
Identity = 139/152 (91.45%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 37  SNRVVSGGGSGAPDPDRSLESNRSAVVGGGACKKARVHPPSSTQPPLKVRKEKLVDRITA 96
           SNRVVSG G G P+PDRSLESNRSAVVGGGACKKARVHP SSTQPPLKVRKEKLVDRITA
Sbjct: 240 SNRVVSGSGGGGPNPDRSLESNRSAVVGGGACKKARVHPTSSTQPPLKVRKEKLVDRITA 299

Query: 97  LHQI------TDTASVLSEAIGYIRFLQGQIEALSYPYLRSAPKELTNSQPLGDERKRQE 156
           LHQI      TDTASVLSEAIGYIRF QGQIEALSYPYLRSAPKELTNSQPLGDERKRQE
Sbjct: 300 LHQIVSPFGKTDTASVLSEAIGYIRFFQGQIEALSYPYLRSAPKELTNSQPLGDERKRQE 359

Query: 157 KPLKELRSRGLCLVPLSCTHLVGADTTYGTGF 182
           KPLKELRSRGLCLVPLSCTHL+GADTTYGTGF
Sbjct: 360 KPLKELRSRGLCLVPLSCTHLLGADTTYGTGF 391

[Close]

BLAST of Cp4.1LG12g08390 vs. NCBI nr
Match: KAG7014067.1 (Transcription factor bHLH68, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 253 bits (645), Expect = 4.22e-83
Identity = 132/148 (89.19%), Postives = 135/148 (91.22%), Query Frame = 0


Query: 1   MTHYHPTKLENFQHQIFNNNPNFAHFSCNTNNPHHGSNRVVSGGGSGAPDPDRSLESNRS 60
           +THYHPTKLENFQHQI  N PNFAHFSCN+NNPHH SNRVVSG G G+PDPDRSLESNRS
Sbjct: 14  ITHYHPTKLENFQHQILKN-PNFAHFSCNSNNPHHRSNRVVSGSGGGSPDPDRSLESNRS 73

Query: 61  AVVGGGACKKARVHPPSSTQPPLKVRKEKLVDRITALHQI------TDTASVLSEAIGYI 120
           AVVGGGACKKARVHP SSTQPPLKVRKEKLVDRITALHQI      TDTASVLSEAIGYI
Sbjct: 74  AVVGGGACKKARVHPTSSTQPPLKVRKEKLVDRITALHQIVSPFGKTDTASVLSEAIGYI 133

Query: 121 RFLQGQIEALSYPYLRSAPKELTNSQPL 142
           RFLQGQIEALSYPYLRSAPKELTNSQPL
Sbjct: 134 RFLQGQIEALSYPYLRSAPKELTNSQPL 160

[Close]

BLAST of Cp4.1LG12g08390 vs. NCBI nr
Match: XP_023548441.1 (transcription factor bHLH68-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206 bits (523), Expect = 8.59e-65
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MTHYHPTKLENFQHQIFNNNPNFAHFSCNTNNPHHGSNRVVSGGGSGAPDPDRSLESNRS 60
           MTHYHPTKLENFQHQIFNNNPNFAHFSCNTNNPHHGSNRVVSGGGSGAPDPDRSLESNRS
Sbjct: 36  MTHYHPTKLENFQHQIFNNNPNFAHFSCNTNNPHHGSNRVVSGGGSGAPDPDRSLESNRS 95

Query: 61  AVVGGGACKKARVHPPSSTQPPLKVRKEKLVDRITALHQI 100
           AVVGGGACKKARVHPPSSTQPPLKVRKEKLVDRITALHQI
Sbjct: 96  AVVGGGACKKARVHPPSSTQPPLKVRKEKLVDRITALHQI 135

[Close]

BLAST of Cp4.1LG12g08390 vs. ExPASy TrEMBL
Match: A0A6J1GPG4 (transcription factor bHLH68-like OS=Cucurbita moschata OX=3662 GN=LOC111456333 PE=4 SV=1)

HSP 1 Score: 275 bits (702), Expect = 6.61e-92
Identity = 142/152 (93.42%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 37  SNRVVSGGGSGAPDPDRSLESNRSAVVGGGACKKARVHPPSSTQPPLKVRKEKLVDRITA 96
           SNRVVSG G G PDPDRSLESNRSAVVGGGACKKARVHPPSSTQPPLKVRKEKLVDRITA
Sbjct: 26  SNRVVSGSGGGGPDPDRSLESNRSAVVGGGACKKARVHPPSSTQPPLKVRKEKLVDRITA 85

Query: 97  LHQI------TDTASVLSEAIGYIRFLQGQIEALSYPYLRSAPKELTNSQPLGDERKRQE 156
           LHQI      TDTASVLSEAIGYIRFLQGQIEALSYPYLRSAPKELTNSQPLGDERKRQE
Sbjct: 86  LHQIVSPFGKTDTASVLSEAIGYIRFLQGQIEALSYPYLRSAPKELTNSQPLGDERKRQE 145

Query: 157 KPLKELRSRGLCLVPLSCTHLVGADTTYGTGF 182
           KPLKELRSRGLCLVPLSCTHL+GADTTYGTGF
Sbjct: 146 KPLKELRSRGLCLVPLSCTHLLGADTTYGTGF 177

[Close]

BLAST of Cp4.1LG12g08390 vs. ExPASy TrEMBL
Match: A0A0A0K957 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447040 PE=4 SV=1)

HSP 1 Score: 206 bits (524), Expect = 3.40e-63
Identity = 130/230 (56.52%), Postives = 145/230 (63.04%), Query Frame = 0


Query: 1   MTHYHPTKLENFQHQIFNNN-------------------------------PN------- 60
           M+HY P KLEN++ QI NNN                               PN       
Sbjct: 45  MSHYQPKKLENWEDQILNNNITSSSQFEASTFVDNIIVKQQQLHSNNNILHPNTIISSHH 104

Query: 61  ---FAHFSCNTNNPHHGSNRVVSGGGSGAPDPDRSLESNRSAVVG--GGACKKARVHPPS 120
              F  FS NTNN +   N         APDPD   ES+++  +G  GGACKKARVHPPS
Sbjct: 105 TNKFLDFSSNTNNNNQDHNTNHLALRPAAPDPDHLSESSKNQSIGSTGGACKKARVHPPS 164

Query: 121 STQPPLKVRKEKLVDRITALHQI------TDTASVLSEAIGYIRFLQGQIEALSYPYLRS 177
           S+QPPLKVRKEKLVDRITALHQI      TDTASVLSEAIGYIRFLQGQIEALSYPYL+S
Sbjct: 165 SSQPPLKVRKEKLVDRITALHQIVSPFGKTDTASVLSEAIGYIRFLQGQIEALSYPYLQS 224

[Close]

BLAST of Cp4.1LG12g08390 vs. ExPASy TrEMBL
Match: A0A6J1HGP4 (transcription factor bHLH68-like OS=Cucurbita moschata OX=3662 GN=LOC111464167 PE=4 SV=1)

HSP 1 Score: 193 bits (490), Expect = 1.87e-58
Identity = 119/224 (53.12%), Postives = 138/224 (61.61%), Query Frame = 0


Query: 1   MTHYHPTKLENFQHQI------------------------FNNNPNFAHFSCNTNNPHHG 60
           M HY P KLEN++HQI                        F+N   F +FS N  N    
Sbjct: 43  MGHYQPKKLENWEHQILDHTTTTNPSPPPPPNFVDIVKQEFSNTNKFLNFSSNNTNFPDL 102

Query: 61  SNRVVSGGGSGAPDPDRSLES----NRSAVVGGGACKKARVHPPSSTQPPLKVRKEKLVD 120
           ++   +      P+   S +S    N  A V G ACKKAR+HPPSS+QPPLKVRKEKLVD
Sbjct: 103 THNQPAAAADHLPEVRFSCKSFEQLNHIAPVSGSACKKARIHPPSSSQPPLKVRKEKLVD 162

Query: 121 RITALHQI------TDTASVLSEAIGYIRFLQGQIEALSYPYLRSAPKELTNSQPLGDER 180
           RITALHQI      TDTASVLSEAIGYIRFLQGQIEALSYPYLRSAPK + ++   G+E 
Sbjct: 163 RITALHQIVSPFGKTDTASVLSEAIGYIRFLQGQIEALSYPYLRSAPKHVRDAGSGGEEM 222

Query: 181 KRQEKPLKELRSRGLCLVPLSCTHLVGADTT--------YGTGF 182
           +R+EK +KELRSRGLCLVP+SCT LVG D          YG GF
Sbjct: 223 RREEKAVKELRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYGNGF 266

[Close]

BLAST of Cp4.1LG12g08390 vs. ExPASy TrEMBL
Match: A0A6J1KMG6 (transcription factor bHLH68-like OS=Cucurbita maxima OX=3661 GN=LOC111494639 PE=4 SV=1)

HSP 1 Score: 193 bits (490), Expect = 1.92e-58
Identity = 120/225 (53.33%), Postives = 137/225 (60.89%), Query Frame = 0


Query: 1   MTHYHPTKLENFQHQI-------------------------FNNNPNFAHFSCNTNNPHH 60
           M HY P KLEN++HQI                         F+N   F +FS N  N   
Sbjct: 43  MGHYQPKKLENWEHQILDHTTTTTNPSPPPPPNFVDIVKQEFSNTNKFLNFSSNNTNFPD 102

Query: 61  GSNRVVSGGGSGAPDPDRSL----ESNRSAVVGGGACKKARVHPPSSTQPPLKVRKEKLV 120
             +   +      P+   S     +SN  A + G ACKKARVHPPSS+QPPLKVRKEKLV
Sbjct: 103 LIHNQPTAAADHLPEVRFSCKSFEQSNHIAPISGSACKKARVHPPSSSQPPLKVRKEKLV 162

Query: 121 DRITALHQI------TDTASVLSEAIGYIRFLQGQIEALSYPYLRSAPKELTNSQPLGDE 180
           DRITALHQI      TDTASVLSEAIGYIRFLQGQIEALSYPYLRSAPK + +S   G+E
Sbjct: 163 DRITALHQIVSPFGKTDTASVLSEAIGYIRFLQGQIEALSYPYLRSAPKHVRDSGSGGEE 222

Query: 181 RKRQEKPLKELRSRGLCLVPLSCTHLVGADTT--------YGTGF 182
            +R+EK +KELRSRGLCLVP+SCT LVG D          YG GF
Sbjct: 223 MRREEKAVKELRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYGNGF 267

[Close]

BLAST of Cp4.1LG12g08390 vs. ExPASy TrEMBL
Match: A0A6J1CYC1 (transcription factor bHLH68-like OS=Momordica charantia OX=3673 GN=LOC111015393 PE=4 SV=1)

HSP 1 Score: 189 bits (480), Expect = 1.71e-56
Identity = 130/254 (51.18%), Postives = 141/254 (55.51%), Query Frame = 0


Query: 1   MTHYHPTKLENFQHQIFNNNPN-------------------------------------- 60
           M HY P  LEN++ QI NNN N                                      
Sbjct: 59  MGHYQPKNLENWEDQILNNNHNQSPNFVDIVKQEVSNNRDQSLILQPDSTLTSSSSHSNK 118

Query: 61  FAHFSCNTNNPHHGSNRVVSGGGSGAPDPDRSLESNRSAVVGGGACKKARVHPPSSTQPP 120
           F +F+ N +NP H  N+  S           S ESNRSA  G GACKKARVHPPSS+QPP
Sbjct: 119 FLNFTYNNSNPDHNINQSAS---------QHSPESNRSAASG-GACKKARVHPPSSSQPP 178

Query: 121 LKVRKEKLVDRITALHQI------TDTASVLSEAIGYIRFLQGQIEALSYPYLRS-APKE 180
           LKVRKEKLVDRITALHQI      TDTASVLSEAIGYIRFLQGQIEALSYPYLRS APK+
Sbjct: 179 LKVRKEKLVDRITALHQIVSPFGKTDTASVLSEAIGYIRFLQGQIEALSYPYLRSSAPKD 238

Query: 181 LTNSQP----------------LGDERKRQEKPLK---ELRSRGLCLVPLSCTHLVGADT 182
           L NSQ                  G+E   QEKPLK   +LRSRGLCLVP+SCT LVG D 
Sbjct: 239 LRNSQQPALLNDSCPRRKATLNQGEEMMNQEKPLKPLKDLRSRGLCLVPVSCTQLVGGDN 298

[Close]

BLAST of Cp4.1LG12g08390 vs. TAIR 10
Match: AT4G29100.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 124.8 bits (312), Expect = 7.2e-29
Identity = 89/195 (45.64%), Postives = 102/195 (52.31%), Query Frame = 0


Query: 18  NNNPNFAHFSCNTNNPHHGSNRVVSGGGSGAPDPDRSLESNRSAVVGGGACKKARVHPPS 77
           NNN N   FS N N  H    R           PDRS E N S  +GG   KK R+ P  
Sbjct: 206 NNNNNMLDFSSNHNGLHLSEGR--------HTPPDRSSECN-SLEIGGSTNKKPRLQPSP 265

Query: 78  STQPPLKVRKEKLVDRITALHQI------TDTASVLSEAIGYIRFLQGQIEALSYPYLRS 137
           S+Q  LKVRKEKL  RI ALHQ+      TDTASVLSEAIGYIRFLQ QIEALS+PY  +
Sbjct: 266 SSQSTLKVRKEKLGGRIAALHQLVSPFGKTDTASVLSEAIGYIRFLQSQIEALSHPYFGT 325

Query: 138 A----------------------PKELTNSQPL---------GDERKRQEKPLKELRSRG 176
                                  P +L N Q +          D +   E+P K+LRSRG
Sbjct: 326 TASGNMRHQQHLQGDRSCIFPEDPGQLVNDQCMKRRGASSSSTDNQNASEEPKKDLRSRG 385

[Close]

BLAST of Cp4.1LG12g08390 vs. TAIR 10
Match: AT1G27660.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 105.5 bits (262), Expect = 4.5e-23
Identity = 68/125 (54.40%), Postives = 78/125 (62.40%), Query Frame = 0


Query: 64  GGGACKKARVHPPSSTQPPLKVRKEKLVDRITALHQI------TDTASVLSEAIGYIRFL 123
           G  A KK RV   SS  PP KVRKEKL DRI AL Q+      TDTASVL EAIGYI+FL
Sbjct: 313 GENASKKPRVESRSSC-PPFKVRKEKLGDRIAALQQLVSPFGKTDTASVLMEAIGYIKFL 372

Query: 124 QGQIEALSYPYLR-SAPKELTNSQPLGDERKRQEKPLKELRSRGLCLVPLSCTHLVGADT 182
           Q QIE LS PY+R S  +    SQ +   ++  E+  ++LRSRGLCLVPLSC   V  D 
Sbjct: 373 QSQIETLSVPYMRASRNRPGKASQLVSQSQEGDEEETRDLRSRGLCLVPLSCMTYVTGDG 432

[Close]

BLAST of Cp4.1LG12g08390 vs. TAIR 10
Match: AT2G20100.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 97.8 bits (242), Expect = 9.4e-21
Identity = 81/223 (36.32%), Postives = 111/223 (49.78%), Query Frame = 0


Query: 4   YHPTKLENFQHQIFNNNPNFAHFSCNTN------NPHHGSNRVVSGGGSGAPDPDRSL-- 63
           Y   +++N++ Q+  +  +    S N N      +P+   N+  +   +   D + ++  
Sbjct: 126 YQAKRIQNWEEQVLRHQASMKQESSNNNSYGIMSSPNSPPNKSCATIINTNEDNNNNIHS 185

Query: 64  -----ESNRSAVVGGG-ACKKARVHPPSSTQPPLKVRKEKLVDRITALHQI------TDT 123
                E N S ++G   A KK ++  PSS Q  LKVRKEKL  RI +LHQ+      TDT
Sbjct: 186 GLNLSECNSSEMIGSSFANKKPKLQVPSS-QSTLKVRKEKLGGRIASLHQLVSPFGKTDT 245

Query: 124 ASVLSEAIGYIRFLQGQIEALSYPYLRSA---------------------PKELTN---- 176
           ASVLSEAIGYIRFL  QIEALS PY  +                      P +L N    
Sbjct: 246 ASVLSEAIGYIRFLHSQIEALSLPYFGTPSRNNMMHQHAQRNMNGIFPEDPGQLVNEYCM 305

[Close]

BLAST of Cp4.1LG12g08390 vs. TAIR 10
Match: AT1G61660.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-18
Identity = 58/128 (45.31%), Postives = 70/128 (54.69%), Query Frame = 0


Query: 56  ESNRSAVVGGGACKKARVHPPSSTQPPLKVRKEKLVDRITALHQI------TDTASVLSE 115
           ES + A     A KK RV  PS   P  KVRKE L D+IT+L Q+      TDTASVL E
Sbjct: 253 ESLKRAKDNESAAKKPRVTTPSPL-PTFKVRKENLRDQITSLQQLVSPFGKTDTASVLQE 312

Query: 116 AIGYIRFLQGQIEALSYPYLRSAPKELTNSQPLGDERKRQEKPLKELRSRGLCLVPLSCT 175
           AI YI+FL  Q+  LS PY++         Q  G  + + E    ELR  GLCLVP+S T
Sbjct: 313 AIEYIKFLHDQVTVLSTPYMKQGASNQQQQQISGKSKSQDENENHELRGHGLCLVPISST 372

Query: 176 HLVGADTT 178
             V  +TT
Sbjct: 373 FPVANETT 379

[Close]

BLAST of Cp4.1LG12g08390 vs. TAIR 10
Match: AT1G61660.3 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-18
Identity = 58/128 (45.31%), Postives = 70/128 (54.69%), Query Frame = 0


Query: 56  ESNRSAVVGGGACKKARVHPPSSTQPPLKVRKEKLVDRITALHQI------TDTASVLSE 115
           ES + A     A KK RV  PS   P  KVRKE L D+IT+L Q+      TDTASVL E
Sbjct: 250 ESLKRAKDNESAAKKPRVTTPSPL-PTFKVRKENLRDQITSLQQLVSPFGKTDTASVLQE 309

Query: 116 AIGYIRFLQGQIEALSYPYLRSAPKELTNSQPLGDERKRQEKPLKELRSRGLCLVPLSCT 175
           AI YI+FL  Q+  LS PY++         Q  G  + + E    ELR  GLCLVP+S T
Sbjct: 310 AIEYIKFLHDQVTVLSTPYMKQGASNQQQQQISGKSKSQDENENHELRGHGLCLVPISST 369

Query: 176 HLVGADTT 178
             V  +TT
Sbjct: 370 FPVANETT 376

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g08390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S3D1	1.0e-27	45.64	Transcription factor bHLH68 OS=Arabidopsis thaliana OX=3702 GN=BHLH68 PE=1 SV=2	[more]
Q9SFZ3	6.3e-22	54.40	Transcription factor bHLH110 OS=Arabidopsis thaliana OX=3702 GN=BHLH110 PE=2 SV=...	[more]
Q7XHI5	1.3e-19	36.32	Transcription factor bHLH133 OS=Arabidopsis thaliana OX=3702 GN=BHLH133 PE=1 SV=...	[more]
Q94JL3	1.6e-17	45.31	Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=...	[more]
Q8GXT3	9.8e-15	44.36	Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=...	[more]

BLAST of Cp4.1LG12g08390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023548439.1	9.66e-123	95.74	transcription factor bHLH68-like [Cucurbita pepo subsp. pepo]	[more]
XP_022953926.1	1.37e-91	93.42	transcription factor bHLH68-like [Cucurbita moschata]	[more]
KAG6575527.1	5.35e-86	91.45	Protein THYLAKOID ASSEMBLY 8, chloroplastic, partial [Cucurbita argyrosperma sub...	[more]
KAG7014067.1	4.22e-83	89.19	Transcription factor bHLH68, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_023548441.1	8.59e-65	100.00	transcription factor bHLH68-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cp4.1LG12g08390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPG4	6.61e-92	93.42	transcription factor bHLH68-like OS=Cucurbita moschata OX=3662 GN=LOC111456333 P...	[more]
A0A0A0K957	3.40e-63	56.52	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447040 PE=4 S...	[more]
A0A6J1HGP4	1.87e-58	53.13	transcription factor bHLH68-like OS=Cucurbita moschata OX=3662 GN=LOC111464167 P...	[more]
A0A6J1KMG6	1.92e-58	53.33	transcription factor bHLH68-like OS=Cucurbita maxima OX=3661 GN=LOC111494639 PE=...	[more]
A0A6J1CYC1	1.71e-56	51.18	transcription factor bHLH68-like OS=Momordica charantia OX=3673 GN=LOC111015393 ...	[more]

BLAST of Cp4.1LG12g08390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29100.1	7.2e-29	45.64	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G27660.1	4.5e-23	54.40	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G20100.1	9.4e-21	36.32	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G61660.1	1.1e-18	45.31	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G61660.3	1.1e-18	45.31	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..59
None	No IPR available	PANTHER	PTHR16223	TRANSCRIPTION FACTOR BHLH83-RELATED	coord: 22..175
None	No IPR available	PANTHER	PTHR16223:SF53	BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN	coord: 22..175
None	No IPR available	CDD	cd11393	bHLH_AtbHLH_like	coord: 84..125 e-value: 4.32094E-15 score: 64.1247
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 88..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g08390.1	Cp4.1LG12g08390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity