Cp4.1LG12g06680 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG12g06680
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
Location	Cp4.1LG12: 7472460 .. 7474635 (+)
RNA-Seq Expression	Cp4.1LG12g06680
Synteny	Cp4.1LG12g06680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATAAACCCTAACCCTGCTTTGCAGAAAATTTTTGGAGGAAGATGACGCAGAAAGCAACCCTATTCAAAGGTCAACAGAAGAGGAAAACAATTCCTCCCAATCGCCATGGAAAAATCCCCCAAACTCGTAAAGGTATCTCTCTGTTCTTTTCCCTCCTTCTTATGCTAAATTTACGCGTAAAAATTACGATTTCTCCTCCTCCGTATTCATTGGGCGTTGTCTTTCCAGGGAAAAGAGTTGTGAAGCCATCGAAGACAACCAAAGAGATGGAAACAGATCGGGTATGTGTTATCTTTTTGTGCTTGTCCGGTAATTTATATGGAATCTAGTAACTGTGAGAGTAGAAACTTATGTTGATAAGTTGTTTTGTTGATGCTTTGTATTTTTAATGTTTCGAATGCGAATTTCTAGCTTAATGTTGCATCGCCTTGTTAGTTTGCAATTCGGGTGAACTATTAGTCATCCATTGTTTTGGTTAGATGAGAACATTTCTGAATTTTCTTGCCTTCTTATTTCCGAGAATGGATTTTGTGCGTGATTCTTAAGGCCTCTTCTCTTGGCTGAACTTGTTAGTTTCTCAGTTATTTCAGATTCTACTGCGAGATCTTTGTTTGAAATTGTAATGTGACTGCAGACATTTTTGTTTCTACTTCTGCTGCATATATGTATTCATGCACATAACATTGGCTTGATTATGTTGGTAGCCGTTTGTGAGAAACTTTTAATGGCGAAGGAAAATTTGAAAAGTTTAAGGGGAAAAGGAGCTTCTACAACTTCACTCTAAGAATATGTATCTGTAGCAATTTTCACCATATAAATACATTTAGAAAATCATCCAACCAACTATTGTCTACACTGTGCATCCCTATGGAAGGATTGCATGAATGCTGAGAAGCACTTTTCTCCTTTTTTAGGAATGATCTCTTGTGCAAAGATAGGATATCCATTTTTCGTTTGACAGAAAGAAAGCATTGTGCAAGCCCAAAGAGAGGAGTGATTTTGGGTTTTAATAAATTATTGATTTCTAATTTTGGGTTTGAAATGCTTTTGGGTTTTTGAAAGGAGAGGAGCTAAGTAGTCTTGATTTTCTTCTTTTATCTGGTAATGGGACATTTGGTAAAGTGTCAAACCTATATTTCCCTTTTCCCTATCTATCGATGACCGTCAGCGAGCGTAAAATTGTGGTCATGTTTGTGCTTGCCTTTTGTTTCTCTTGTACCTTTCTTTGTGTAAGGCTATTCCTTTCAAGAGGAAGGATAAATTTCCTTGAACGAATATTATTAAATTTCGTAGTATGTGGGAGCAGTTAATTCTTAATAAAGAAGAAAAAAAAGAAGAATCTTGTGCAGCTCCTTGGTTGTCACCCCCTTTTCAAACTAGTCATATTAATGGAAGGTTTCATTTCTTATCATACTAAGTTCTTTTTCTCTAACGGTTCAGGCGGTGATATTGTCCTCTTTGGGTTTTCTCTTTCGAGCTTCCCCCAAGGCGTTAAAACACGTCTGCTAGGGAAAGGTTTCCACACCCTTATAAAGGGTGTGTTTCATTCTCCTCCCCAACCAATGTGGGATATCACATTTACTGATTTAAAGTCGAAATTAGTATAGAATGGCTATAATGTTTGGGTGTATTCTTCTTCCTTGAAATGCTTGGAAATCTATAGAATGTGCTGATAATTGTTCGTGTATTGGAATCACAAGCTTTATATTACTTTTGCCGTTTCATATGAAGAATTTACGTAGATTTATGGGAAAAAACAGGAATTGAGCAAGTTTATCAATTACTGCAACGAGACGAAGGCCGCTACATTAGCCAACAAGGAGGGTGGGCAGCTGAGTATTGTGAAAACGCCGTCGGATGCTGCTGGTAATAGTAATAATGCAGCAAAGAAGTAAAGGAGGATTTAGAATTTTGTGAGAATAGTGTGAAATTATTTGTGATGTTATTTCTTTCCCTTTTATTTTTCCATCTATGTCTTCTAACGCTTTTCTCAATTTTGTCGGCAGTAATCGGTTACTAATATATATAAAAATTTGTTTCAACTTTTGTAAAATTAGCATATGCAGAAATGAAAAGATTTCTCTGGGCTTTCTATTCATTCCACATTAGCTTATTCTGAAATCAAGATATTGGCTTTTTAGGTCATCGGGAGTGATCGAACTTCAAGAAATGGTA

mRNA sequence

CATAAACCCTAACCCTGCTTTGCAGAAAATTTTTGGAGGAAGATGACGCAGAAAGCAACCCTATTCAAAGGTCAACAGAAGAGGAAAACAATTCCTCCCAATCGCCATGGAAAAATCCCCCAAACTCGTAAAGGGAAAAGAGTTGTGAAGCCATCGAAGACAACCAAAGAGATGGAAACAGATCGGGAATTGAGCAAGTTTATCAATTACTGCAACGAGACGAAGGCCGCTACATTAGCCAACAAGGAGGGTGGGCAGCTGAGTATTGTGAAAACGCCGTCGGATGCTGCTGGTAATAGTAATAATGCAGCAAAGAAGTCATCGGGAGTGATCGAACTTCAAGAAATGGTA

Coding sequence (CDS)

ATGACGCAGAAAGCAACCCTATTCAAAGGTCAACAGAAGAGGAAAACAATTCCTCCCAATCGCCATGGAAAAATCCCCCAAACTCGTAAAGGGAAAAGAGTTGTGAAGCCATCGAAGACAACCAAAGAGATGGAAACAGATCGGGAATTGAGCAAGTTTATCAATTACTGCAACGAGACGAAGGCCGCTACATTAGCCAACAAGGAGGGTGGGCAGCTGAGTATTGTGAAAACGCCGTCGGATGCTGCTGGTAATAGTAATAATGCAGCAAAGAAGTCATCGGGAGTGATCGAACTTCAAGAAATGGTA

Protein sequence

MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNETKAATLANKEGGQLSIVKTPSDAAGNSNNAAKKSSGVIELQEMV

Homology

[Close]

BLAST of Cp4.1LG12g06680 vs. NCBI nr
Match: XP_022953341.1 (uncharacterized protein LOC111455923 [Cucurbita moschata] >XP_022991947.1 uncharacterized protein LOC111488438 [Cucurbita maxima] >XP_023547630.1 uncharacterized protein LOC111806515 [Cucurbita pepo subsp. pepo] >KAG7014263.1 hypothetical protein SDJN02_24438 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178 bits (452), Expect = 4.44e-56
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET
Sbjct: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 92
          KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK
Sbjct: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 92

[Close]

BLAST of Cp4.1LG12g06680 vs. NCBI nr
Match: KAG6575705.1 (hypothetical protein SDJN03_26344, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177 bits (448), Expect = 1.81e-55
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET
Sbjct: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 92
          KAATLANKEGGQLSIVKTPSDA GNSNNAAKK
Sbjct: 61 KAATLANKEGGQLSIVKTPSDAGGNSNNAAKK 92

[Close]

BLAST of Cp4.1LG12g06680 vs. NCBI nr
Match: XP_038897231.1 (uncharacterized protein LOC120085359 [Benincasa hispida])

HSP 1 Score: 157 bits (398), Expect = 8.38e-48
Identity = 83/92 (90.22%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKA LFKGQQKRKTIPPNRHGKIPQTRKGKR VKPSKTTKEMETDRE+SKFINYCNET
Sbjct: 1  MTQKANLFKGQQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 92
          KAATLANKEGGQLSIVKTPSD  GNSN   +K
Sbjct: 61 KAATLANKEGGQLSIVKTPSD-TGNSNAKKEK 91

[Close]

BLAST of Cp4.1LG12g06680 vs. NCBI nr
Match: XP_008461352.1 (PREDICTED: uncharacterized protein LOC103499958 [Cucumis melo] >KAA0058587.1 uncharacterized protein E6C27_scaffold339G00540 [Cucumis melo var. makuwa] >TYK10387.1 uncharacterized protein E5676_scaffold459G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 151 bits (382), Expect = 1.98e-45
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKA LFKG+QKRKTIPPNRHGKIPQTRKGKR VKPSKTTKEMETDRE+SKFINYCNET
Sbjct: 1  MTQKANLFKGKQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 92
          KAATLANKEGGQLSIVKTP++ A NSN  AKK
Sbjct: 61 KAATLANKEGGQLSIVKTPAN-ADNSN--AKK 89

[Close]

BLAST of Cp4.1LG12g06680 vs. NCBI nr
Match: XP_022145051.1 (uncharacterized protein LOC111014568 [Momordica charantia])

HSP 1 Score: 150 bits (379), Expect = 7.25e-45
Identity = 80/97 (82.47%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKA  FKGQQKRKTIPPNRHGK+PQTRKGKR VKPSK TKEMETDRELSKFINYCNET
Sbjct: 1  MTQKANQFKGQQKRKTIPPNRHGKVPQTRKGKRFVKPSKITKEMETDRELSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNS-----NNAAKK 92
          KAATLANKEGGQLSIVK P DA  +S     N++AKK
Sbjct: 61 KAATLANKEGGQLSIVKAPLDAGNSSAKKEGNSSAKK 97

[Close]

BLAST of Cp4.1LG12g06680 vs. ExPASy TrEMBL
Match: A0A6J1JNC0 (uncharacterized protein LOC111488438 OS=Cucurbita maxima OX=3661 GN=LOC111488438 PE=4 SV=1)

HSP 1 Score: 178 bits (452), Expect = 2.15e-56
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET
Sbjct: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 92
          KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK
Sbjct: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 92

[Close]

BLAST of Cp4.1LG12g06680 vs. ExPASy TrEMBL
Match: A0A6J1GMQ7 (uncharacterized protein LOC111455923 OS=Cucurbita moschata OX=3662 GN=LOC111455923 PE=4 SV=1)

HSP 1 Score: 178 bits (452), Expect = 2.15e-56
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET
Sbjct: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 92
          KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK
Sbjct: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 92

[Close]

BLAST of Cp4.1LG12g06680 vs. ExPASy TrEMBL
Match: A0A5A7UV30 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00290 PE=4 SV=1)

HSP 1 Score: 151 bits (382), Expect = 9.60e-46
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKA LFKG+QKRKTIPPNRHGKIPQTRKGKR VKPSKTTKEMETDRE+SKFINYCNET
Sbjct: 1  MTQKANLFKGKQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 92
          KAATLANKEGGQLSIVKTP++ A NSN  AKK
Sbjct: 61 KAATLANKEGGQLSIVKTPAN-ADNSN--AKK 89

[Close]

BLAST of Cp4.1LG12g06680 vs. ExPASy TrEMBL
Match: A0A1S3CE62 (uncharacterized protein LOC103499958 OS=Cucumis melo OX=3656 GN=LOC103499958 PE=4 SV=1)

HSP 1 Score: 151 bits (382), Expect = 9.60e-46
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKA LFKG+QKRKTIPPNRHGKIPQTRKGKR VKPSKTTKEMETDRE+SKFINYCNET
Sbjct: 1  MTQKANLFKGKQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 92
          KAATLANKEGGQLSIVKTP++ A NSN  AKK
Sbjct: 61 KAATLANKEGGQLSIVKTPAN-ADNSN--AKK 89

[Close]

BLAST of Cp4.1LG12g06680 vs. ExPASy TrEMBL
Match: A0A6J1CV79 (uncharacterized protein LOC111014568 OS=Momordica charantia OX=3673 GN=LOC111014568 PE=4 SV=1)

HSP 1 Score: 150 bits (379), Expect = 3.51e-45
Identity = 80/97 (82.47%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKA  FKGQQKRKTIPPNRHGK+PQTRKGKR VKPSK TKEMETDRELSKFINYCNET
Sbjct: 1  MTQKANQFKGQQKRKTIPPNRHGKVPQTRKGKRFVKPSKITKEMETDRELSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNS-----NNAAKK 92
          KAATLANKEGGQLSIVK P DA  +S     N++AKK
Sbjct: 61 KAATLANKEGGQLSIVKAPLDAGNSSAKKEGNSSAKK 97

[Close]

BLAST of Cp4.1LG12g06680 vs. TAIR 10
Match: AT3G52040.1 (unknown protein; Has 37 Blast hits to 37 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 113.6 bits (283), Expect = 9.3e-26
Identity = 60/89 (67.42%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQK+  FKGQQKRKTI PNRHGK  QTRKGKR VKP+K TKEM+TDREL+KFIN+CNE 
Sbjct: 1  MTQKSNQFKGQQKRKTIAPNRHGKSIQTRKGKRNVKPTKMTKEMDTDRELTKFINHCNEV 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNA 90
          KA   A KEGGQL+I+K  S    +  +A
Sbjct: 61 KATNAACKEGGQLNIIKAESQPEPSKKSA 89

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g06680 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG12g06680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953341.1	4.44e-56	100.00	uncharacterized protein LOC111455923 [Cucurbita moschata] >XP_022991947.1 unchar...	[more]
KAG6575705.1	1.81e-55	98.91	hypothetical protein SDJN03_26344, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038897231.1	8.38e-48	90.22	uncharacterized protein LOC120085359 [Benincasa hispida]	[more]
XP_008461352.1	1.98e-45	89.13	PREDICTED: uncharacterized protein LOC103499958 [Cucumis melo] >KAA0058587.1 unc...	[more]
XP_022145051.1	7.25e-45	82.47	uncharacterized protein LOC111014568 [Momordica charantia]	[more]

BLAST of Cp4.1LG12g06680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JNC0	2.15e-56	100.00	uncharacterized protein LOC111488438 OS=Cucurbita maxima OX=3661 GN=LOC111488438...	[more]
A0A6J1GMQ7	2.15e-56	100.00	uncharacterized protein LOC111455923 OS=Cucurbita moschata OX=3662 GN=LOC1114559...	[more]
A0A5A7UV30	9.60e-46	89.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CE62	9.60e-46	89.13	uncharacterized protein LOC103499958 OS=Cucumis melo OX=3656 GN=LOC103499958 PE=...	[more]
A0A6J1CV79	3.51e-45	82.47	uncharacterized protein LOC111014568 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]

BLAST of Cp4.1LG12g06680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52040.1	9.3e-26	67.42	unknown protein; Has 37 Blast hits to 37 proteins in 15 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019034	Uncharacterised protein family UPF0390	PFAM	PF09495	DUF2462	coord: 1..79 e-value: 7.9E-8 score: 33.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..36
None	No IPR available	PANTHER	PTHR36769:SF1	2,3-BISPHOSPHOGLYCERATE-DEPENDENT PHOSPHOGLYCERATE MUTASE	coord: 1..86
None	No IPR available	PANTHER	PTHR36769	2,3-BISPHOSPHOGLYCERATE-DEPENDENT PHOSPHOGLYCERATE MUTASE	coord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g06680.1	Cp4.1LG12g06680.1	mRNA