Cp4.1LG12g06550 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG12g06550
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Ribosomal protein
Location	Cp4.1LG12: 7467891 .. 7471782 (-)
RNA-Seq Expression	Cp4.1LG12g06550
Synteny	Cp4.1LG12g06550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTGATGACTGCACGAAACATCCAATACAGAGCCTCTCTTATCTCTTCCATTTCTATGTTGATAGACTCCCAGAAACCTCTTCTTCTTCTTTGATTGACGGACTGAGCTCTTTCTTCCTCCATGGCAATGGCCGGTTATAGCCCCACTGTGCCCTCACCCCTTGCCATGGCCCGCACTTCTTCAGTGCATCCTCTGGACCTTTCTTCCCTTTTCGCCGCCAGGCCCATTGCTGCCTCCTCCACCGCCCACATCTTCTCTTTATGCCACCCCTTAATTCTGCAGCGCAGGGGAGGGAGGTCTATCAATTGGGTCGACCTTAATTTTAGAAGAGAATCTAGGGTTCATTTGGTTGTGGCTGCTTTGGCTGCGGAAATTGAAGTGGCTGAGGTCGTGGATGAGAATGGAGAGGAGAATGATGGATTAGCTGCTTCAATTGTGCCCAAGATTAAGAGGGGAAAGGCTGCATTGCCTCTTAAGAGGGACAGGGTAAGCTTGAGCTTATGTTCATGTATTTGGCTGATTTTAATCTAGTTGACTGCCTTTTTGGATATGGTTTTGGTGTTTGTTTGGCTGTAAAAAGTTTTGTGCATGCGTTCTTAGTTTGTTATTCCTCTGTTCATTGATTCTTTACTTTCTACTGTTACCATAAGGCTTATGTAAGTAGTGGAATGTTCTTCATTTTTGTTTAACCTCTGGTTAAAATCTCTGTTGGATTGTTTGTTCTTCCTAGTTTCATGAACTTCTAGAAGTGATTGTTCCTATCATGTGTATTTCCGATTATGGCTTCATCAGTTGACTGTGAGCCATTAGAGGTGGAAAGAAAACTCTAGCAATTGGGCGGTCTAGTTCTGTTTCTTTATTTTGTTCTTTGTAGCATTGACTCTTATTTTCTTTGAAGTTCTATTATGTGAGATCCCCCGTCGATTGAAGAGAAGAACGAGTGCTAACAAGGACACTGTGCCCCGAAAGGGAGTGTATGGTGAGACCCCACATCGATTGGAGAGAGGGACGAGTGCCAGCGAGGATGCTGGGTCTCAAAGAGGGGTGGATTGTGAGACCCCACATCAGTTGGGCCCCGAAAGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAGCATTCTTTATAAGGGTGTGGAAACCTTTCACTAGCAGGTACGTTTTAAAAACCTTGAGGAAAAGCCCGGAAGGAAAAGCCTAAAGAGGACAATATTGCTAGCGGTGGGTTTGGGCCGTTACATATTTTGAACCAGACCGTAGATTTAAAAAGAGGTCCATAAATGATATGTGCATTACTTTTAGTACATATTGTAAGCTTTGTTCTTTCAAAATATGTATTTTCCACCTTCTCTTATTACTGTTGCATCAGCTCTAACATGAAATTGTGTTCTGAAAACATGCAGACCAGATCAAAGAGGTTCCTGGAAATTCAAAAATTGAGGGAAAGTAAAAAGGAGTATGACCTGAAAACAGCAATATCTTTGTTGAAACAAATGTCTAAGACGAAATTCGTGGAAACCGCCGAAGCCCACTTCCGATTAAACATCGATCCCAAATATAACGATCAACAGCTGAGAGCAACAGTAAGTTTCTTTTGGTTCTACTATATCTATGTCTTAAATCACCAATTTTCACTTTTTACATAGGTAAATCTTCCCAAGGGAACTGGACAGACAGTCAAGGTAGCTGTGCTTACTCAAGGTAATCACTAAATTTAACTTGAACAATATTTTCATTGAATGGTAGAAGTAACCAGAGTTTTCAACGAGTTCTCGTTTCATTTTTTTACCTTGTGAAGAATCGTTGTTTCCTTGTTGAGAGAGCATTGTGGAAACGATATTAATAGTTTGAAGTAGCTATTGTACGAACACAGGTATTATCGTCTTCAGTGTTTGTGAATCTTATGGTTTGTGGTGGAGAATCCTCGAATTGAAAGGGAGGTTTGCTTGCTTGATTGAAAACGTGTGAGATCCCACATCGGTTGGGGAGGATAACGAAACATTCTTTATAAGGGTGTAGAAACCTCTCCCTAGTAGACGCGTTTTAAAAACCTTGACGAGAACCCTGAAAGAGAAAGCCCAAAGAGGATAATATTTGCTAGCGGTGGGCTTGAACCGTTACAAAACGACTTTGTTAGTGAGATTGCTTTAACTATCATGGGGTTGTTTATATGAATTCCTCTTCATAATTTATGAGCAAATCTCCTACTTTTGTTCTTGATTTAATCTTCATAGTCCTAGGCTAATACTGATACGTCGGTTTTCTCCCTTGTAACTGGTTTCGAAATAATGTGAGTGAAGAGAATGAGACGAACGCTTCGAGCTATGGCTTTTTGAATTCTTTTTTCCTTCTAGATATGGATTCTCTCTATCTATTCCCATCGTTCTTGTCAGCTATGAATTTCGAGATTCAGCTTATTTTGGTCATACGCCGCGTTGCTTTTTCAACAAAATTTTTCACTCATTTCTTATTATCTTATCGCTTTGTGAATCATGTAGGTGAAAAATTCGACGAAGCGAAAAACGCAGGAGCTGATTTGGTTGGCGGTGAGGATTTGATAGAACAGATCAAAGGAGGTTTCATGGAATTCGATAAGCTAATTGCTTCACCAGATATGATGCCTAAGGTACAATTTCTTACATCTTTTTTCAATCATACTCTGTGGTGGCTTTCCAAAATGTATACGTTCCCATGTAATATGAAATCGATCACCGAACACGTGATTCCAATTTTCTTGTATGCAACTAATAATTTTTCGTTTCATGCTTATACGAAAAGTATTCTTGGCTACTAGCTATGACCGAAATTAAGCTAAGATACGGTGTTGTGTTCGTGTCATAGATATATGTGTGAATTGTTTCGGTATACACTTTCGGAGTCGGTGTGGACTTTGAGATATTTTAGTTAGTTTTGTGGTGACGACCACTTAATCTGTTAACCCCGTCCTCTCGTTTGCATCAGGTTGCTAGTCTAGGTAAGCTTCTAGGACCTCGAGGACTGATGCCGAACCCAAAAGCTGGCACCGTTACGACAAATATACCTCAGGTATAGGTCAGATTCATCTATCTACACATGTATGCATCACAATTTGAGAATAAAATTGTTCATAATAGCTTTGTCCTGTTTCAGGCTATAGCAGAATTCAAGCAGGGAAAAGTCGAATTCCGAGCGGATAAAACCGGGATTGTTCACTTACCTTTCGGGAAGGCAGACTTTTCGGAAGATGACCTCCTCGTGAACTTGCTTGCTGCAATAGTATGTTCTTTCCTAATCTCGCATTCTCAAAAACTCCATTGGTTTCGAAGAAGTTATTAGTCTTCACCGTATTGATTCGTTCCCATTAATGTAACAGAAATCAGTAGAGGTAAACAAGCCAACAGGTGCTAAAGGAGTATACTGGAAGAGCGCGCATATATGCTCGTCGATGGGGCCTTCGATTCGATTAAACATAAGGGAAATGCTTGATTACAAGATCCCATCATCAAATGCTTGAAGAATTTTAGTCTACACCTGTAAATGTCTTCTTCAATTTGTTTAATATTAGCCCTCGTGGATACGCCTTTCGAATCGTCTTCAGCGGCCGAAGAATTCGTTAAGATCGTTAACAGAGTTGGTATGGTATCTCAAGAAAGAATTTGAAACTTGGAAACTGCATATTCATTTGTTTCTGAACTGATTCAAAAGTAGCTCAGAATCAATCATTTTCACCTCATCTGATTATTGTTTATTTCTCAATTTTTTAGTTTATCTTAGCTTTTTGTTATGGAAAAATATGGTTATAGCTTCTTTTTTTTTTAATGTTAGTTCATGTTAGTTCACGGTCAATTGGATAAAAGTTCAAAATGCGTGCAAAATGCAAGCGGAAACACAACCAAGGTCGG

mRNA sequence

TATTGATGACTGCACGAAACATCCAATACAGAGCCTCTCTTATCTCTTCCATTTCTATGTTGATAGACTCCCAGAAACCTCTTCTTCTTCTTTGATTGACGGACTGAGCTCTTTCTTCCTCCATGGCAATGGCCGGTTATAGCCCCACTGTGCCCTCACCCCTTGCCATGGCCCGCACTTCTTCAGTGCATCCTCTGGACCTTTCTTCCCTTTTCGCCGCCAGGCCCATTGCTGCCTCCTCCACCGCCCACATCTTCTCTTTATGCCACCCCTTAATTCTGCAGCGCAGGGGAGGGAGGTCTATCAATTGGGTCGACCTTAATTTTAGAAGAGAATCTAGGGTTCATTTGGTTGTGGCTGCTTTGGCTGCGGAAATTGAAGTGGCTGAGGTCGTGGATGAGAATGGAGAGGAGAATGATGGATTAGCTGCTTCAATTGTGCCCAAGATTAAGAGGGGAAAGGCTGCATTGCCTCTTAAGAGGGACAGGACCAGATCAAAGAGGTTCCTGGAAATTCAAAAATTGAGGGAAAGTAAAAAGGAGTATGACCTGAAAACAGCAATATCTTTGTTGAAACAAATGTCTAAGACGAAATTCGTGGAAACCGCCGAAGCCCACTTCCGATTAAACATCGATCCCAAATATAACGATCAACAGCTGAGAGCAACAGTAAATCTTCCCAAGGGAACTGGACAGACAGTCAAGGTAGCTGTGCTTACTCAAGGTGAAAAATTCGACGAAGCGAAAAACGCAGGAGCTGATTTGGTTGGCGGTGAGGATTTGATAGAACAGATCAAAGGAGGTTTCATGGAATTCGATAAGCTAATTGCTTCACCAGATATGATGCCTAAGGTTGCTAGTCTAGGTAAGCTTCTAGGACCTCGAGGACTGATGCCGAACCCAAAAGCTGGCACCGTTACGACAAATATACCTCAGGCTATAGCAGAATTCAAGCAGGGAAAAGTCGAATTCCGAGCGGATAAAACCGGGATTGTTCACTTACCTTTCGGGAAGGCAGACTTTTCGGAAGATGACCTCCTCGTGAACTTGCTTGCTGCAATAAAATCAGTAGAGGTAAACAAGCCAACAGGTGCTAAAGGAGTATACTGGAAGAGCGCGCATATATGCTCGTCGATGGGGCCTTCGATTCGATTAAACATAAGGGAAATGCTTGATTACAAGATCCCATCATCAAATGCTTGAAGAATTTTAGTCTACACCTGTAAATGTCTTCTTCAATTTGTTTAATATTAGCCCTCGTGGATACGCCTTTCGAATCGTCTTCAGCGGCCGAAGAATTCGTTAAGATCGTTAACAGAGTTGGTATGGTATCTCAAGAAAGAATTTGAAACTTGGAAACTGCATATTCATTTGTTTCTGAACTGATTCAAAAGTAGCTCAGAATCAATCATTTTCACCTCATCTGATTATTGTTTATTTCTCAATTTTTTAGTTTATCTTAGCTTTTTGTTATGGAAAAATATGGTTATAGCTTCTTTTTTTTTTAATGTTAGTTCATGTTAGTTCACGGTCAATTGGATAAAAGTTCAAAATGCGTGCAAAATGCAAGCGGAAACACAACCAAGGTCGG

Coding sequence (CDS)

ATGGCAATGGCCGGTTATAGCCCCACTGTGCCCTCACCCCTTGCCATGGCCCGCACTTCTTCAGTGCATCCTCTGGACCTTTCTTCCCTTTTCGCCGCCAGGCCCATTGCTGCCTCCTCCACCGCCCACATCTTCTCTTTATGCCACCCCTTAATTCTGCAGCGCAGGGGAGGGAGGTCTATCAATTGGGTCGACCTTAATTTTAGAAGAGAATCTAGGGTTCATTTGGTTGTGGCTGCTTTGGCTGCGGAAATTGAAGTGGCTGAGGTCGTGGATGAGAATGGAGAGGAGAATGATGGATTAGCTGCTTCAATTGTGCCCAAGATTAAGAGGGGAAAGGCTGCATTGCCTCTTAAGAGGGACAGGACCAGATCAAAGAGGTTCCTGGAAATTCAAAAATTGAGGGAAAGTAAAAAGGAGTATGACCTGAAAACAGCAATATCTTTGTTGAAACAAATGTCTAAGACGAAATTCGTGGAAACCGCCGAAGCCCACTTCCGATTAAACATCGATCCCAAATATAACGATCAACAGCTGAGAGCAACAGTAAATCTTCCCAAGGGAACTGGACAGACAGTCAAGGTAGCTGTGCTTACTCAAGGTGAAAAATTCGACGAAGCGAAAAACGCAGGAGCTGATTTGGTTGGCGGTGAGGATTTGATAGAACAGATCAAAGGAGGTTTCATGGAATTCGATAAGCTAATTGCTTCACCAGATATGATGCCTAAGGTTGCTAGTCTAGGTAAGCTTCTAGGACCTCGAGGACTGATGCCGAACCCAAAAGCTGGCACCGTTACGACAAATATACCTCAGGCTATAGCAGAATTCAAGCAGGGAAAAGTCGAATTCCGAGCGGATAAAACCGGGATTGTTCACTTACCTTTCGGGAAGGCAGACTTTTCGGAAGATGACCTCCTCGTGAACTTGCTTGCTGCAATAAAATCAGTAGAGGTAAACAAGCCAACAGGTGCTAAAGGAGTATACTGGAAGAGCGCGCATATATGCTCGTCGATGGGGCCTTCGATTCGATTAAACATAAGGGAAATGCTTGATTACAAGATCCCATCATCAAATGCTTGA

Protein sequence

MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAARPIAASSTAHIFSLCHPLILQRRGGRSINWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIVPKIKRGKAALPLKRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADFSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA

Homology

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BLAST of Cp4.1LG12g06550 vs. ExPASy Swiss-Prot
Match: Q9LE95 (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 9.6e-123
Identity = 236/347 (68.01%), Postives = 274/347 (78.96%), Query Frame = 0


Query: 14  LAMARTSSVHPLDLSSLFAARPIAASSTAHIFSLCHPLILQRRGGRSINWVDLNFRRESR 73
           L  A +S  +  D S     +P+  +S     SLC  L L +R    + WVD   +++S 
Sbjct: 11  LCYASSSFQYQQDPSFQTHFKPLLLNS-----SLCR-LTLNQRERSCLKWVDFTSQKQSP 70

Query: 74  VHL---VVAALAAEIEVAEVVDENGEENDGLAASIVPKIKRGKAALPLKRDRTRSKRFLE 133
             +   V+AA+AAE EVA++ +E GE           K K+GKAALPLK DRTRSKRFLE
Sbjct: 71  KSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSKRFLE 130

Query: 134 IQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTG 193
           IQKLRE K+EYDLKTA+SL+KQMS TKFVETAEAHFRLNIDPKYNDQQLRATV+LPKGTG
Sbjct: 131 IQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTG 190

Query: 194 QTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKL 253
           +TVK+AVL QG+K DEAK AGAD+VGGE+LIEQIKGGFM+FDKLIA+ DMM KVASLG++
Sbjct: 191 KTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVASLGRI 250

Query: 254 LGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADFSEDDLLVNLL 313
           LGPRGLMP PKAGTVT N+ QA+ EFK+GKVEFR DKTGIVH+PFGK +F E+DLL+NL 
Sbjct: 251 LGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLF 310

Query: 314 AAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSS 358
           A IKSVE NKPTGAKGVYWKSAHI SSMGPSIRLNIREMLDYK PS+
Sbjct: 311 ATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 351

[Close]

BLAST of Cp4.1LG12g06550 vs. ExPASy Swiss-Prot
Match: Q9LY66 (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 1.7e-119
Identity = 237/344 (68.90%), Postives = 270/344 (78.49%), Query Frame = 0


Query: 15  AMARTSSVHPLDLSSLFAARPIAASSTAHIFSLCHPLILQRRGGRSINWVDLNFRRESRV 74
           A A T S       SLF+    A+S   H   L  PL+L   G R      ++  R S  
Sbjct: 15  AAASTRSQDLTPTPSLFS---FASSRPNH---LSFPLLL-LGGSRDRRCAAID--RASNH 74

Query: 75  HLVVAALAAEIEVAEVVDENGEENDGLAASIVPKIKRGKAALPLKRDRTRSKRFLEIQKL 134
             +V+A+AAE   A++  E   E    A    PK K+GKAAL LKRDRTRSKRFLEIQKL
Sbjct: 75  KFIVSAVAAE---ADLDTEEDLEQTATAVLDPPKPKKGKAALVLKRDRTRSKRFLEIQKL 134

Query: 135 RESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVK 194
           RE+KKEYD+ TAISLLKQ + T+FVE+ EAHFRLNIDPKYNDQQLRATV+LPKGTGQTV 
Sbjct: 135 RETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKGTGQTVI 194

Query: 195 VAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKLLGPR 254
           VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLIASPDMM KVA LGK+LGPR
Sbjct: 195 VAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMVKVAGLGKILGPR 254

Query: 255 GLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADFSEDDLLVNLLAAIK 314
           GLMPNPKAGTVT NIPQAI EFK+GKVEFRADKTGIVH+PFGK +F+E+DLL+N LAA+K
Sbjct: 255 GLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINFLAAVK 314

Query: 315 SVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSN 359
           SVE NKP GAKGVYWKSAHICSSMGPSI+LNIREM+D+K P++N
Sbjct: 315 SVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPTAN 346

[Close]

BLAST of Cp4.1LG12g06550 vs. ExPASy Swiss-Prot
Match: P49208 (50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=RPL1 PE=2 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 3.0e-76
Identity = 146/168 (86.90%), Postives = 157/168 (93.45%), Query Frame = 0


Query: 109 IKRGKAALPLKRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRL 168
           +++GK    LK DR RSKRFLEIQKLRE KKEYDLKTAISL+K+ +KTKFVET EAHFRL
Sbjct: 41  LRQGKLHWRLKSDRVRSKRFLEIQKLRELKKEYDLKTAISLVKETAKTKFVETVEAHFRL 100

Query: 169 NIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGF 228
           NIDPKYNDQQLRATV+LPKGTG+ +KVAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGF
Sbjct: 101 NIDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGF 160

Query: 229 MEFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEF 277
           MEFDKLIASPDMMPKVASLGK+LGPRGLMPNPKAGTVT NIPQAIAEF
Sbjct: 161 MEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTANIPQAIAEF 208

[Close]

BLAST of Cp4.1LG12g06550 vs. ExPASy Swiss-Prot
Match: B0JNQ5 (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rplA PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.2e-75
Identity = 142/230 (61.74%), Postives = 184/230 (80.00%), Query Frame = 0


Query: 125 SKRFLEIQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLRATVN 184
           S+R  + Q   E+ K Y+   A++LLK+++  KF ETAEAH RL IDPKY DQQLR TV+
Sbjct: 6   SRRLRDAQAKVEN-KAYEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRTTVS 65

Query: 185 LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 244
           LPKGTG+TV+VAV+T+GEK  EA NAGAD+VG E+LIE+I  G M+F+ LIA+PDMMPKV
Sbjct: 66  LPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEEIAKGMMDFEVLIATPDMMPKV 125

Query: 245 ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADFSEDD 304
           A LG+ LGPRGLMP+PK GTVTT++  AIAEFK GK+EFRAD+TGIVH+ FGKA FS +D
Sbjct: 126 AKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFSAED 185

Query: 305 LLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKI 355
           LLVNL A  ++V+ N+P+GAKG YW++ ++ SSMGPSI+++I  + D K+
Sbjct: 186 LLVNLKALQETVDRNRPSGAKGRYWRTVYVSSSMGPSIQVDISALRDLKL 234

[Close]

BLAST of Cp4.1LG12g06550 vs. ExPASy Swiss-Prot
Match: Q3MA18 (50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplA PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 9.7e-75
Identity = 140/230 (60.87%), Postives = 181/230 (78.70%), Query Frame = 0


Query: 125 SKRFLEIQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLRATVN 184
           S+R  E+Q   E  +EY    A+SLLK+ +  KF E AEAH RL IDPKY DQQLR TV 
Sbjct: 6   SRRLRELQAKVED-REYGPLDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRTTVA 65

Query: 185 LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 244
           LPKGTGQ V+VAV+ +GEK  EA NAGAD+ G E+LI++I+ G M+FDKLIA+PD+MP+V
Sbjct: 66  LPKGTGQIVRVAVIARGEKVTEASNAGADVFGSEELIDEIQKGRMDFDKLIATPDVMPQV 125

Query: 245 ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADFSEDD 304
           A LGK+LGPRGLMP+PK GTVT +I  AIAEFK GK+EFRAD+TGIVH+ FGKA FS +D
Sbjct: 126 AKLGKMLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPED 185

Query: 305 LLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKI 355
           LLVNL A  ++++ N+P+GAKG YW++ ++ ++MGPSIR++I  + DYK+
Sbjct: 186 LLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKL 234

[Close]

BLAST of Cp4.1LG12g06550 vs. NCBI nr
Match: XP_023549332.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 691 bits (1782), Expect = 3.22e-250
Identity = 359/359 (100.00%), Postives = 359/359 (100.00%), Query Frame = 0


Query: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAARPIAASSTAHIFSLCHPLILQRRGGRS 60
           MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAARPIAASSTAHIFSLCHPLILQRRGGRS
Sbjct: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAARPIAASSTAHIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIVPKIKRGKAALPLKR 120
           INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIVPKIKRGKAALPLKR
Sbjct: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIVPKIKRGKAALPLKR 120

Query: 121 DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240
           ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240

Query: 241 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 300
           MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF
Sbjct: 241 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 300

Query: 301 SEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359
           SEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 SEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359

[Close]

BLAST of Cp4.1LG12g06550 vs. NCBI nr
Match: XP_022991908.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 687 bits (1772), Expect = 1.08e-248
Identity = 356/359 (99.16%), Postives = 358/359 (99.72%), Query Frame = 0


Query: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAARPIAASSTAHIFSLCHPLILQRRGGRS 60
           MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFA RPIAASSTAHIFSLCHPLILQRRGGRS
Sbjct: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASSTAHIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIVPKIKRGKAALPLKR 120
           INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGE+NDGLAASIVPKIKRGKAALPLKR
Sbjct: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEDNDGLAASIVPKIKRGKAALPLKR 120

Query: 121 DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRTRSKRFLEIQKLRESK+EYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRTRSKRFLEIQKLRESKREYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240
           ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240

Query: 241 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 300
           MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF
Sbjct: 241 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 300

Query: 301 SEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359
           SEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 SEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359

[Close]

BLAST of Cp4.1LG12g06550 vs. NCBI nr
Match: XP_022954232.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 683 bits (1763), Expect = 2.53e-247
Identity = 355/359 (98.89%), Postives = 355/359 (98.89%), Query Frame = 0


Query: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAARPIAASSTAHIFSLCHPLILQRRGGRS 60
           MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFA RPIAASSTAHIFSLCHPL LQRRGGRS
Sbjct: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASSTAHIFSLCHPLTLQRRGGRS 60

Query: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIVPKIKRGKAALPLKR 120
           INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASI PKIKRGKAALPLKR
Sbjct: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIAPKIKRGKAALPLKR 120

Query: 121 DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQ SKTKFVETAEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240
           ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240

Query: 241 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 300
           MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF
Sbjct: 241 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 300

Query: 301 SEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359
           SEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 SEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359

[Close]

BLAST of Cp4.1LG12g06550 vs. NCBI nr
Match: KAG6575704.1 (50S ribosomal protein L1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 680 bits (1754), Expect = 5.95e-246
Identity = 354/359 (98.61%), Postives = 354/359 (98.61%), Query Frame = 0


Query: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAARPIAASSTAHIFSLCHPLILQRRGGRS 60
           MAMAGYSPTVPSPLAMARTSSVH LDLSSLFA RPIAASST HIFSLCHPL LQRRGGRS
Sbjct: 1   MAMAGYSPTVPSPLAMARTSSVHHLDLSSLFAVRPIAASSTTHIFSLCHPLTLQRRGGRS 60

Query: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIVPKIKRGKAALPLKR 120
           INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIVPKIKRGKAALPLKR
Sbjct: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIVPKIKRGKAALPLKR 120

Query: 121 DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240
           ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240

Query: 241 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 300
           MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF
Sbjct: 241 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 300

Query: 301 SEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359
           S DDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 SADDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359

[Close]

BLAST of Cp4.1LG12g06550 vs. NCBI nr
Match: XP_022152504.1 (50S ribosomal protein L1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 633 bits (1633), Expect = 1.70e-227
Identity = 332/360 (92.22%), Postives = 341/360 (94.72%), Query Frame = 0


Query: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAARPIAASSTAHIFSLCHPLILQRRGGRS 60
           MAMA  SPT  S L MA TSSVHP D+ SL + RP+AASSTA IFSLCHPL +QRRGGRS
Sbjct: 1   MAMATCSPTARSSLTMAHTSSVHPQDIPSLLSFRPMAASSTATIFSLCHPLTVQRRGGRS 60

Query: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEEN-DGLAASIVPKIKRGKAALPLK 120
           INWVDLNFRRESR HLVVAALAAEIEVAEVV+ENGEE   GLA S+VPK+KRGKAALPLK
Sbjct: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGVAGLATSVVPKLKRGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMS TKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVE+RADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359
           FSEDDLLVNLLAA+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360

[Close]

BLAST of Cp4.1LG12g06550 vs. ExPASy TrEMBL
Match: A0A6J1JXL6 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111488406 PE=3 SV=1)

HSP 1 Score: 687 bits (1772), Expect = 5.20e-249
Identity = 356/359 (99.16%), Postives = 358/359 (99.72%), Query Frame = 0


Query: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAARPIAASSTAHIFSLCHPLILQRRGGRS 60
           MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFA RPIAASSTAHIFSLCHPLILQRRGGRS
Sbjct: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASSTAHIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIVPKIKRGKAALPLKR 120
           INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGE+NDGLAASIVPKIKRGKAALPLKR
Sbjct: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEDNDGLAASIVPKIKRGKAALPLKR 120

Query: 121 DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRTRSKRFLEIQKLRESK+EYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRTRSKRFLEIQKLRESKREYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240
           ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240

Query: 241 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 300
           MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF
Sbjct: 241 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 300

Query: 301 SEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359
           SEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 SEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359

[Close]

BLAST of Cp4.1LG12g06550 vs. ExPASy TrEMBL
Match: A0A6J1GQH4 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111456548 PE=3 SV=1)

HSP 1 Score: 683 bits (1763), Expect = 1.22e-247
Identity = 355/359 (98.89%), Postives = 355/359 (98.89%), Query Frame = 0


Query: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAARPIAASSTAHIFSLCHPLILQRRGGRS 60
           MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFA RPIAASSTAHIFSLCHPL LQRRGGRS
Sbjct: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASSTAHIFSLCHPLTLQRRGGRS 60

Query: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIVPKIKRGKAALPLKR 120
           INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASI PKIKRGKAALPLKR
Sbjct: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIAPKIKRGKAALPLKR 120

Query: 121 DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQ SKTKFVETAEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240
           ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240

Query: 241 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 300
           MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF
Sbjct: 241 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 300

Query: 301 SEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359
           SEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 SEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359

[Close]

BLAST of Cp4.1LG12g06550 vs. ExPASy TrEMBL
Match: A0A6J1DG73 (Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020212 PE=3 SV=1)

HSP 1 Score: 633 bits (1633), Expect = 8.21e-228
Identity = 332/360 (92.22%), Postives = 341/360 (94.72%), Query Frame = 0


Query: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAARPIAASSTAHIFSLCHPLILQRRGGRS 60
           MAMA  SPT  S L MA TSSVHP D+ SL + RP+AASSTA IFSLCHPL +QRRGGRS
Sbjct: 1   MAMATCSPTARSSLTMAHTSSVHPQDIPSLLSFRPMAASSTATIFSLCHPLTVQRRGGRS 60

Query: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEEN-DGLAASIVPKIKRGKAALPLK 120
           INWVDLNFRRESR HLVVAALAAEIEVAEVV+ENGEE   GLA S+VPK+KRGKAALPLK
Sbjct: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGVAGLATSVVPKLKRGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMS TKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVE+RADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359
           FSEDDLLVNLLAA+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360

[Close]

BLAST of Cp4.1LG12g06550 vs. ExPASy TrEMBL
Match: A0A5D3CGN7 (Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00300 PE=3 SV=1)

HSP 1 Score: 617 bits (1590), Expect = 2.92e-221
Identity = 325/360 (90.28%), Postives = 334/360 (92.78%), Query Frame = 0


Query: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAARPIAASSTAHIFSLCHPLILQRRGGRS 60
           MAMA  +PTV S   MA TSSVHP D SSL + RPIAASSTA+IFSLCHPLILQRRGGRS
Sbjct: 1   MAMATCNPTVHSSFTMAHTSSVHPQDPSSLLSFRPIAASSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEE-NDGLAASIVPKIKRGKAALPLK 120
            NWVDL F RE R HLVVAALAAEIEVAEVV+ENGEE N G A S +PKIK+GKAALPLK
Sbjct: 61  TNWVDLKFGRECRDHLVVAALAAEIEVAEVVEENGEEGNGGTATSALPKIKKGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE+K EYDLKTAISLLKQ S TKF ETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFAETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVE+RADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359
           FSEDDLLVNLL+AIKSVE NKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLSAIKSVEANKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360

[Close]

BLAST of Cp4.1LG12g06550 vs. ExPASy TrEMBL
Match: A0A0A0K886 (Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_7G420870 PE=3 SV=1)

HSP 1 Score: 613 bits (1580), Expect = 9.73e-220
Identity = 323/360 (89.72%), Postives = 335/360 (93.06%), Query Frame = 0


Query: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAARPIAASSTAHIFSLCHPLILQRRGGRS 60
           MAMA  +PT+ S L MA TSSVHP D SSL + RPIAASSTA+IFSLCHPLILQRRGGRS
Sbjct: 1   MAMATCNPTLHSSLTMAHTSSVHPQDPSSLLSFRPIAASSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEE-NDGLAASIVPKIKRGKAALPLK 120
           INWVDL F RE R HLVVAALAAEIEV E V+ENGEE N G A S++PKIK+GKAALPLK
Sbjct: 61  INWVDLKFGRECRDHLVVAALAAEIEVDEDVEENGEEGNGGTATSVLPKIKKGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE+K EYDLKTAISLLKQ S TKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEK DEAKNAGADLVGG+DLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKLDEAKNAGADLVGGKDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVE+RADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359
           FSEDDLLVNLL+AIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLN REMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLSAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 360

[Close]

BLAST of Cp4.1LG12g06550 vs. TAIR 10
Match: AT3G63490.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 430.6 bits (1106), Expect = 1.2e-120
Identity = 237/344 (68.90%), Postives = 270/344 (78.49%), Query Frame = 0


Query: 15  AMARTSSVHPLDLSSLFAARPIAASSTAHIFSLCHPLILQRRGGRSINWVDLNFRRESRV 74
           A A T S       SLF+    A+S   H   L  PL+L   G R      ++  R S  
Sbjct: 15  AAASTRSQDLTPTPSLFS---FASSRPNH---LSFPLLL-LGGSRDRRCAAID--RASNH 74

Query: 75  HLVVAALAAEIEVAEVVDENGEENDGLAASIVPKIKRGKAALPLKRDRTRSKRFLEIQKL 134
             +V+A+AAE   A++  E   E    A    PK K+GKAAL LKRDRTRSKRFLEIQKL
Sbjct: 75  KFIVSAVAAE---ADLDTEEDLEQTATAVLDPPKPKKGKAALVLKRDRTRSKRFLEIQKL 134

Query: 135 RESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVK 194
           RE+KKEYD+ TAISLLKQ + T+FVE+ EAHFRLNIDPKYNDQQLRATV+LPKGTGQTV 
Sbjct: 135 RETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKGTGQTVI 194

Query: 195 VAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKLLGPR 254
           VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLIASPDMM KVA LGK+LGPR
Sbjct: 195 VAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMVKVAGLGKILGPR 254

Query: 255 GLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADFSEDDLLVNLLAAIK 314
           GLMPNPKAGTVT NIPQAI EFK+GKVEFRADKTGIVH+PFGK +F+E+DLL+N LAA+K
Sbjct: 255 GLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINFLAAVK 314

Query: 315 SVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSN 359
           SVE NKP GAKGVYWKSAHICSSMGPSI+LNIREM+D+K P++N
Sbjct: 315 SVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPTAN 346

[Close]

BLAST of Cp4.1LG12g06550 vs. TAIR 10
Match: AT3G63490.2 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 287.3 bits (734), Expect = 1.6e-77
Identity = 174/283 (61.48%), Postives = 200/283 (70.67%), Query Frame = 0


Query: 15  AMARTSSVHPLDLSSLFAARPIAASSTAHIFSLCHPLILQRRGGRSINWVDLNFRRESRV 74
           A A T S       SLF+    A+S   H   L  PL+L   G R      ++  R S  
Sbjct: 15  AAASTRSQDLTPTPSLFS---FASSRPNH---LSFPLLL-LGGSRDRRCAAID--RASNH 74

Query: 75  HLVVAALAAEIEVAEVVDENGEENDGLAASIVPKIKRGKAALPLKRDRTRSKRFLEIQKL 134
             +V+A+AAE   A++  E   E    A    PK K+GKAAL LKRDRTRSKRFLEIQKL
Sbjct: 75  KFIVSAVAAE---ADLDTEEDLEQTATAVLDPPKPKKGKAALVLKRDRTRSKRFLEIQKL 134

Query: 135 RESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVK 194
           RE+KKEYD+ TAISLLKQ + T+FVE+ EAHFRLNIDPKYNDQQLRATV+LPKGTGQTV 
Sbjct: 135 RETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKGTGQTVI 194

Query: 195 VAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKLLGPR 254
           VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLIASPDMM KVA LGK+LGPR
Sbjct: 195 VAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMVKVAGLGKILGPR 254

Query: 255 GLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGK 298
           GLMPNPKAGTVT NIPQ+    ++GK+     K G+     GK
Sbjct: 255 GLMPNPKAGTVTANIPQS---SRRGKLNSEQTKLGLFTFHLGK 282

[Close]

BLAST of Cp4.1LG12g06550 vs. TAIR 10
Match: AT2G42710.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 167.2 bits (422), Expect = 2.5e-41
Identity = 92/224 (41.07%), Postives = 140/224 (62.50%), Query Frame = 0


Query: 133 KLRESKKE-YDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQ 192
           +L+  KK  +DL  AI  +K  +K KF ET EAH RL I+   ++  +R T+ LP    +
Sbjct: 179 ELKHGKKPIFDLMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSVKK 238

Query: 193 TVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQI-KGGFMEFDKLIASPDMMPKVASLGKL 252
            VKVA   +G   ++AK AGAD+VGG +LIE+I K G ++FD+ +A+P MMP+V  + ++
Sbjct: 239 DVKVAFFAEGADAEDAKAAGADVVGGLELIEEILKSGKIDFDRCLATPKMMPRVYKISRI 298

Query: 253 LGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADFSEDDLLVNLL 312
           L   GLMPNPK G+VT ++ +A+ + K G  +FR DKT I+H+P GK  FSE+ L  N+ 
Sbjct: 299 LNNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSEEALRENVG 358

Query: 313 AAIKSVEVNKPTGAKGV-----YWKSAHICSSMGPSIRLNIREM 350
           A + ++ + KP G K       Y  + H+CS+MG    ++I+ +
Sbjct: 359 AFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTMGKGYPVSIQSL 402

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g06550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LE95	9.6e-123	68.01	50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=...	[more]
Q9LY66	1.7e-119	68.90	50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 ...	[more]
P49208	3.0e-76	86.90	50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=R...	[more]
B0JNQ5	1.2e-75	61.74	50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 G...	[more]
Q3MA18	9.7e-75	60.87	50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937)...	[more]

BLAST of Cp4.1LG12g06550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023549332.1	3.22e-250	100.00	50S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022991908.1	1.08e-248	99.16	50S ribosomal protein L1, chloroplastic-like [Cucurbita maxima]	[more]
XP_022954232.1	2.53e-247	98.89	50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata]	[more]
KAG6575704.1	5.95e-246	98.61	50S ribosomal protein L1, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_022152504.1	1.70e-227	92.22	50S ribosomal protein L1, chloroplastic-like [Momordica charantia]	[more]

BLAST of Cp4.1LG12g06550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JXL6	5.20e-249	99.16	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111488406 PE=3 SV=1	[more]
A0A6J1GQH4	1.22e-247	98.89	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111456548 PE=3 SV=1	[more]
A0A6J1DG73	8.21e-228	92.22	Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020212 PE=3 SV=1	[more]
A0A5D3CGN7	2.92e-221	90.28	Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00...	[more]
A0A0A0K886	9.73e-220	89.72	Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_7G420870 PE=3 SV=1	[more]

BLAST of Cp4.1LG12g06550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63490.1	1.2e-120	68.90	Ribosomal protein L1p/L10e family	[more]
AT3G63490.2	1.6e-77	61.48	Ribosomal protein L1p/L10e family	[more]
AT2G42710.1	2.5e-41	41.07	Ribosomal protein L1p/L10e family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	3.40.50.790		coord: 188..279 e-value: 2.8E-83 score: 280.5
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	PFAM	PF00687	Ribosomal_L1	coord: 150..340 e-value: 6.8E-48 score: 163.1
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	CDD	cd00403	Ribosomal_L1	coord: 143..344 e-value: 5.17822E-73 score: 223.6
None	No IPR available	GENE3D	3.30.190.20		coord: 141..344 e-value: 2.8E-83 score: 280.5
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 138..351
None	No IPR available	PANTHER	PTHR23105:SF110	MITOCHONDRIAL RIBOSOMAL PROTEIN, LARGE	coord: 138..351
IPR005878	Ribosomal protein L1, bacterial-type	TIGRFAM	TIGR01169	TIGR01169	coord: 124..348 e-value: 3.1E-94 score: 312.6
IPR005878	Ribosomal protein L1, bacterial-type	HAMAP	MF_01318_B	Ribosomal_L1_B	coord: 119..349 score: 39.526554
IPR023673	Ribosomal protein L1, conserved site	PROSITE	PS01199	RIBOSOMAL_L1	coord: 241..259
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	56808	Ribosomal protein L1	coord: 127..346

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g06550.1	Cp4.1LG12g06550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding