Cp4.1LG11g11160 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGACGACGTTTGGACTTGAATATTTGCTAAAACCCTTGTAATTCTTTGATGTCCATTTTCGTTGCAGTTCAAGCTTAGTGGAAAGAAGTCTACAATGGCGTCCTTAAGGGCAGTCTCTCGGCTATCATCTCGCCTGCAATCTCTCGCTCCAAAGCTCAACAAAAGGTCTCCATCTTCTGAGCTCTCTCCATTCAAATCGTCTTGTCAATCTCAGCCCTCTGCAGCTTCTACATCGCGTGTTTCTTGCACTTCGCGGTGAGACTTGTCTCTTTTCTCCATTTCCAATCTCATTTGTCATTTCATCAAATAATCATTACAGAAATGGATTCGGTTCAATTCCTTACTATGGAATAGATTTTTGCAATAGGTTACCATTGGAGTTGAGTAGTCAGGGGTCACTGATGCCATTGCACAGCGCTATAGCTGCAGCTAGATTGATTTCGAGTCTGAGCATTGAATCTCAAGGATGGGGGTTGGTTCCTCAGGGTATGTTCTTGCACTTGATTCTTGTGAATGCTAATGATTCTCCTTAATTGTATTTGTTCGAGGAATGTTGCTAAGGAAGTGTTCCGAATATCCGTTTGTTTGTTCGCACTT CGACGACGTTTGGACTTGAATATTTGCTAAAACCCTTGTAATTCTTTGATGTCCATTTTCGTTGCAGTTCAAGCTTAGTGGAAAGAAGTCTACAATGGCGTCCTTAAGGGCAGTCTCTCGGCTATCATCTCGCCTGCAATCTCTCGCTCCAAAGCTCAACAAAAGGTCTCCATCTTCTGAGCTCTCTCCATTCAAATCGTCTTGTCAATCTCAGCCCTCTGCAGCTTCTACATCGCGTGTTTCTTGCACTTCGCGGTTACCATTGGAGTTGAGTAGTCAGGGGTCACTGATGCCATTGCACAGCGCTATAGCTGCAGCTAGATTGATTTCGAGTCTGAGCATTGAATCTCAAGGATGGGGGTTGGTTCCTCAGGGTATGTTCTTGCACTTGATTCTTGTGAATGCTAATGATTCTCCTTAATTGTATTTGTTCGAGGAATGTTGCTAAGGAAGTGTTCCGAATATCCGTTTGTTTGTTCGCACTT ATGGCGTCCTTAAGGGCAGTCTCTCGGCTATCATCTCGCCTGCAATCTCTCGCTCCAAAGCTCAACAAAAGGTCTCCATCTTCTGAGCTCTCTCCATTCAAATCGTCTTGTCAATCTCAGCCCTCTGCAGCTTCTACATCGCGTGTTTCTTGCACTTCGCGGTTACCATTGGAGTTGAGTAGTCAGGGGTCACTGATGCCATTGCACAGCGCTATAGCTGCAGCTAGATTGATTTCGAGTCTGAGCATTGAATCTCAAGGATGGGGGTTGGTTCCTCAGGGTATGTTCTTGCACTTGATTCTTGTGAATGCTAATGATTCTCCTTAA MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSSCQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGMFLHLILVNANDSP Homology
BLAST of Cp4.1LG11g11160 vs. NCBI nr
Match: XP_023547330.1 (uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo] >XP_023547331.1 uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo] >XP_023547332.1 uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 169 bits (429), Expect = 2.18e-52 Identity = 95/99 (95.96%), Postives = 97/99 (97.98%), Query Frame = 0
BLAST of Cp4.1LG11g11160 vs. NCBI nr
Match: XP_022946234.1 (uncharacterized protein LOC111450380 [Cucurbita moschata] >XP_022946235.1 uncharacterized protein LOC111450380 [Cucurbita moschata] >XP_022946236.1 uncharacterized protein LOC111450380 [Cucurbita moschata]) HSP 1 Score: 168 bits (426), Expect = 6.24e-52 Identity = 94/99 (94.95%), Postives = 97/99 (97.98%), Query Frame = 0
BLAST of Cp4.1LG11g11160 vs. NCBI nr
Match: KAG6599455.1 (hypothetical protein SDJN03_09233, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 168 bits (426), Expect = 9.97e-52 Identity = 94/99 (94.95%), Postives = 97/99 (97.98%), Query Frame = 0
BLAST of Cp4.1LG11g11160 vs. NCBI nr
Match: XP_022999549.1 (uncharacterized protein LOC111493876 [Cucurbita maxima] >XP_022999550.1 uncharacterized protein LOC111493876 [Cucurbita maxima] >XP_022999551.1 uncharacterized protein LOC111493876 [Cucurbita maxima]) HSP 1 Score: 167 bits (423), Expect = 1.79e-51 Identity = 94/99 (94.95%), Postives = 96/99 (96.97%), Query Frame = 0
BLAST of Cp4.1LG11g11160 vs. NCBI nr
Match: KAG7030432.1 (hypothetical protein SDJN02_08779, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 167 bits (423), Expect = 2.16e-51 Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0
BLAST of Cp4.1LG11g11160 vs. ExPASy TrEMBL
Match: A0A6J1G399 (uncharacterized protein LOC111450380 OS=Cucurbita moschata OX=3662 GN=LOC111450380 PE=4 SV=1) HSP 1 Score: 168 bits (426), Expect = 3.02e-52 Identity = 94/99 (94.95%), Postives = 97/99 (97.98%), Query Frame = 0
BLAST of Cp4.1LG11g11160 vs. ExPASy TrEMBL
Match: A0A6J1KDE2 (uncharacterized protein LOC111493876 OS=Cucurbita maxima OX=3661 GN=LOC111493876 PE=4 SV=1) HSP 1 Score: 167 bits (423), Expect = 8.66e-52 Identity = 94/99 (94.95%), Postives = 96/99 (96.97%), Query Frame = 0
BLAST of Cp4.1LG11g11160 vs. ExPASy TrEMBL
Match: A0A5A7V7B3 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00330 PE=4 SV=1) HSP 1 Score: 164 bits (414), Expect = 3.81e-50 Identity = 94/113 (83.19%), Postives = 101/113 (89.38%), Query Frame = 0
BLAST of Cp4.1LG11g11160 vs. ExPASy TrEMBL
Match: A0A0A0LKT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004120 PE=4 SV=1) HSP 1 Score: 152 bits (383), Expect = 1.09e-45 Identity = 85/99 (85.86%), Postives = 92/99 (92.93%), Query Frame = 0
BLAST of Cp4.1LG11g11160 vs. ExPASy TrEMBL
Match: A0A6J1DYI4 (uncharacterized protein LOC111024217 OS=Momordica charantia OX=3673 GN=LOC111024217 PE=4 SV=1) HSP 1 Score: 151 bits (381), Expect = 2.19e-45 Identity = 84/99 (84.85%), Postives = 92/99 (92.93%), Query Frame = 0
BLAST of Cp4.1LG11g11160 vs. TAIR 10
Match: AT1G55205.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 81.6 bits (200), Expect = 4.1e-16 Identity = 57/101 (56.44%), Postives = 74/101 (73.27%), Query Frame = 0
BLAST of Cp4.1LG11g11160 vs. TAIR 10
Match: AT1G55205.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 80.5 bits (197), Expect = 9.2e-16 Identity = 56/96 (58.33%), Postives = 71/96 (73.96%), Query Frame = 0
BLAST of Cp4.1LG11g11160 vs. TAIR 10
Match: AT3G13674.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55205.1); Has 76 Blast hits to 76 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 79.3 bits (194), Expect = 2.0e-15 Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 0
BLAST of Cp4.1LG11g11160 vs. TAIR 10
Match: AT4G39300.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 45.1 bits (105), Expect = 4.3e-05 Identity = 37/95 (38.95%), Postives = 55/95 (57.89%), Query Frame = 0
BLAST of Cp4.1LG11g11160 vs. TAIR 10
Match: AT4G39300.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11630.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 42.0 bits (97), Expect = 3.6e-04 Identity = 36/93 (38.71%), Postives = 53/93 (56.99%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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