Cp4.1LG11g10520 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g10520
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Actin-related protein 2/3 complex subunit 3
Location	Cp4.1LG11: 8762010 .. 8765513 (+)
RNA-Seq Expression	Cp4.1LG11g10520
Synteny	Cp4.1LG11g10520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACCCCTTCCGCTCGCAGATATTCCGGTGGCTATTCCGACTCCCATCCACTTATCGGAACAGAAAACTCTCCGGTAAGTCTCATCGGATCATGATTACTCATTCTGCTTACTGTAATGCCAGAGTCGATCGAACTGCGGATTTCGAAAATTTGATTTTCTGGCTTTGAATGATTCATTTCTAAAGTACGAGTCTGAAATTATCGCTTCGAGAGATCGATCCGCTTACGCTCACATTTTCTCCAAAGATCTTTGCAGTTGAGAAGAATTTGGATCTCGTACAGGATTGTAAGACATTGATTATTGAGAAAAATATGGTGAGGTTTCAAGTTTTGTAATGCTTTTTCAAGAATTTGGAGCTTGTTTGTGTTCTTGATCCATTTCATCAATTTTAATGGATTGATTTTACCGTATTTCAAATGGCTGTTTCTCTCTGTAAGGATTAAATTAGAACTGAGCGAGCGATTGTCTTCTAGGTTCACCACTCTAGCTTTGTGGATGAGGAAGGAATAAGCAAGGCTTGTGGATGCCCTTTATTTCCTTTGAAAAGTCATGGTCCTGCTCCAGATTCAGATCAAGGTTTAGCTCAAACTTCAATTTGATTATATTGTTTGTTCTTTATGCGTTTCATACTGAAATTGATCTTGTTTGGAAATTCACAGATAAGACTGATATTGTTGATGAAGCGATTTCATTCTTTCGTGCTAATGTCTTCTTTAGAAATTTTGATATTAAGAGTCCTGCTGATAAGCTTCTCATCTACTTAACATTCCACATCAATGTGGCTTTGAAGAGGCTTGAAGGTTGCAGAACTTTGACTGTTGGAAACAAGGCTATAATTAACTTGGGTTTGGAGAATGTCCCTGTGCCCGGAGAGCAGGGCTTTCCCTTTCCTGGTCTCTTCCCTATTCCCAAATCTAATGGGGAAGCAGGTAATGCTTGATCTTAGTTTTCTCTCTCTCTCTATATATATATGTACTATGTATGTACCTGCAACAGCACAAACTCACCTCACCGCTAGTAAATATTGTCTTTTTTGAGTTTTTTCCTTCCGAACTTCCCGGTAAGGTTTTTAAAACGGGTCTACTAGGGAGAGGTTTTCACTCCCTTGTAAGGAATACTTCGTTCTCCTCTCCAACTAATGGGGGATCTCACAATCCATCCCATTGGGGGCCAGCGTCCTTGCTGGCACGCACACTGCCCGGTGTCTTGGCTCTGAAAACATTTGTAACAGCCCAAATCCATCGCTAGCCGATATTGTCCTCTTTGGACTTTTCCTTTCGGATTTCTTCTCAAAGCTTTTAAAGCGCGTCTACTAGGGAGAAGTTTCCACTCCTTTATAAGGAATGTTTCATTCTCCTCTCCTCTCCTCCTAATATGGGATCTCACCATCCACCCTCTTTGGGGCTCACCGTCCTTGTTGGCAGACCGCCCAATGTCTGGCTTTGATACCATTGGTAACAACCCAAACTCACCGAGAGGGCCAAGCCACTGGGAGTTCCCTTGCAAGGAATGCTTCGTTTTCCTCTCCAACCAACGTGGGATTTCACAATCCACCCCTTGGGGGCCTAGCATCTTCGCTGGCATATCGCCCGATATTTTGCTCTGATACCATTTGTAACAGCCCAAGCCCATTGCTAGCAGATATTGTCCTCATCAGACTTTTCCTTTTGGGGTTTTCCTCAAGGTTTTTAAAACGCATTTGCTAGGGAGAGGTTTCCACACCCCTGTAAAGAATGTTTCGTTCCCCTCTCCAACCGATGTGGGATCTCACTGCTGTTTGTTAACTAGAGATGCTCCACTGCCCCATGATTATCAACCTTTTTCATTTGCAATTGGTTTGTTTGCTGAATACAAATTAGGCACTTTCTTCTTTTCTTGTTTCAATTCAGTTGATGCAGATCTTATGAGTTAATCTTGTGTTCAATAGCCTCCTGTTTCTTGTCTTAGGAGTTGATAGTGTTCATAAGCTTCAAATATGTCCATTTTGATATGCAGAGCTATTCAGAGATTATTTGAAGGAGATAAGAGAAGAAACAAGTGGGAGACTCTTGAGTGTTGCCTATAGAGCAAATGGAACTCCAAATAAATGGTGGTTAGCATTTGCAAAGAGGAAGTTTATGAACATCGTCACTCCTTGATTAAATTGCTTCCAAGACGTTGATTTGAAAGTTATAAATAAGCACCACATGAGGCTTCTACAATGATGTGGTTTCTTTCAATGGCACTTCAGGAGGTCGTTTCTAATCAACAGAATCTGAATGTTATATCAGTTTATGCTAATGCATATCAAATTCAGCAGAAGCTAGGTCATGTTCTTTTTCTTTTTAATAATGATCTTAAATGTAATCTGCTTCCATTTCACTAGTTTTGTACATTAACTACATCGGTTTTCATGTGTGAGATCCCACATCGGTTAGAGAGGGGAACGAAGTGTAGAAACTTCTCTCTAGCCATTTTAAAACCTTGAAGGGAATCTCGAAAGGGAAAGCCTAAAGAAGACAGTATTTGCTAATGATGGGCTTAGGCGGTTACAAATAGTATCAGAGCTAGGTTTTGGAGGTGTGCCAGTGAGGACACTAATCTCCGAAGGGGGTGATGTAACAACCCAAGCTNGTTTTGTACATTAACTACACCGGTTTTCATGTGTGAGATCCCACATCGGTTAGAGAGGGGAACGAAGTGTAGAAACTTCTCTCTAGCCATTTTAAAACCTTGAAGGGAATCTCGAAAGGGAAAGCCTAAAGAAGACAGTATTTGCTAATGATGGGCTTAGGCGGTTACAAATAGTATCAGAGCTAGGTTTTGGAGGTGTGCCAGTGAGGACACTAATCCCCGAAGGGGGTGATGTAACAACCCAAGCTCATTGCTAGCAGATATTGTCCTCTTTAGGCTTCCCCTCAAGGTTTTAAAACGTGTTTGCGAGGTAGAGGTTTTCACACCCTTATAAAGAATGTTTTGTTCCTCTCTCCATCCGATGTGGGATTTCACAATCNGGCGGTTACAAATAGTATCAGAGCTAGGTTTTGGAGGTGTGCCAGTGAGGACACTAATCTCCGAAGGGGGTGATGTAACAACCCAAGCTCATTGCTAGCAGATATTGTCCTCTTTAGGCTTCCCCTCAAGGTTTTAAAACGTGTTTGCGAGGTAGAGGTTTTCACACCCTTATAAAGAATGTTTTGTTCCTCTCTCCATCCGATGTGGGATTTCACAATCCCCTCCCCTTCACGGTCCAGGGTCCAGTGTCCTCGTTGACACTTATTCCCCTCTCCAATCGATGTTAGATCTCACATCATGCCCATGTGTTCTTATTGATTGAATACCCTGTTTCTTACTCTATTCTTTAATTTTGAGGTGATCTGATCTGTACCCTTCACATTGATTTCATCTAATCTCATACCATGATGCCCTTAGTTCTTGTATCACGTGTGCATGGAGTGCCGGTTTAGAACGACTTTCAAAGTGCTTCAAAATACGTCCGAAGTCATTCCAAAGAGGTCCAAAA

mRNA sequence

TCACCCCTTCCGCTCGCAGATATTCCGGTGGCTATTCCGACTCCCATCCACTTATCGGAACAGAAAACTCTCCGTACGAGTCTGAAATTATCGCTTCGAGAGATCGATCCGCTTACGCTCACATTTTCTCCAAAGATCTTTGCAGTTGAGAAGAATTTGGATCTCGTACAGGATTGTAAGACATTGATTATTGAGAAAAATATGGTTCACCACTCTAGCTTTGTGGATGAGGAAGGAATAAGCAAGGCTTGTGGATGCCCTTTATTTCCTTTGAAAAGTCATGGTCCTGCTCCAGATTCAGATCAAGATAAGACTGATATTGTTGATGAAGCGATTTCATTCTTTCGTGCTAATGTCTTCTTTAGAAATTTTGATATTAAGAGTCCTGCTGATAAGCTTCTCATCTACTTAACATTCCACATCAATGTGGCTTTGAAGAGGCTTGAAGGTTGCAGAACTTTGACTGTTGGAAACAAGGCTATAATTAACTTGGGTTTGGAGAATGTCCCTGTGCCCGGAGAGCAGGGCTTTCCCTTTCCTGAGCTATTCAGAGATTATTTGAAGGAGATAAGAGAAGAAACAAGTGGGAGACTCTTGAGTGTTGCCTATAGAGCAAATGGAACTCCAAATAAATGGTGGTTAGCATTTGCAAAGAGGAAGTTTATGAACATCGTCACTCCTTGATTAAATTGCTTCCAAGACGTTGATTTGAAAGTTATAAATAAGCACCACATGAGGCTTCTACAATGATGTGGTTTCTTTCAATGGCACTTCAGGAGTTCTTGTATCACGTGTGCATGGAGTGCCGGTTTAGAACGACTTTCAAAGTGCTTCAAAATACGTCCGAAGTCATTCCAAAGAGGTCCAAAA

Coding sequence (CDS)

TCACCCCTTCCGCTCGCAGATATTCCGGTGGCTATTCCGACTCCCATCCACTTATCGGAACAGAAAACTCTCCGTACGAGTCTGAAATTATCGCTTCGAGAGATCGATCCGCTTACGCTCACATTTTCTCCAAAGATCTTTGCAGTTGAGAAGAATTTGGATCTCGTACAGGATTGTAAGACATTGATTATTGAGAAAAATATGGTTCACCACTCTAGCTTTGTGGATGAGGAAGGAATAAGCAAGGCTTGTGGATGCCCTTTATTTCCTTTGAAAAGTCATGGTCCTGCTCCAGATTCAGATCAAGATAAGACTGATATTGTTGATGAAGCGATTTCATTCTTTCGTGCTAATGTCTTCTTTAGAAATTTTGATATTAAGAGTCCTGCTGATAAGCTTCTCATCTACTTAACATTCCACATCAATGTGGCTTTGAAGAGGCTTGAAGGTTGCAGAACTTTGACTGTTGGAAACAAGGCTATAATTAACTTGGGTTTGGAGAATGTCCCTGTGCCCGGAGAGCAGGGCTTTCCCTTTCCTGAGCTATTCAGAGATTATTTGAAGGAGATAAGAGAAGAAACAAGTGGGAGACTCTTGAGTGTTGCCTATAGAGCAAATGGAACTCCAAATAAATGGTGGTTAGCATTTGCAAAGAGGAAGTTTATGAACATCGTCACTCCTTGA

Protein sequence

SPLPLADIPVAIPTPIHLSEQKTLRTSLKLSLREIDPLTLTFSPKIFAVEKNLDLVQDCKTLIIEKNMVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFPELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP

Homology

[Close]

BLAST of Cp4.1LG11g10520 vs. ExPASy Swiss-Prot
Match: Q1ECJ7 (Actin-related protein 2/3 complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=ARPC3 PE=1 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 3.9e-77
Identity = 140/172 (81.40%), Postives = 152/172 (88.37%), Query Frame = 0


Query: 68  MVHHSSFVDEEGISKACGCPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFD 127
           MV+HSSFVDEEG++KACGCPL PLKSH  GPAP S+QDKTDIVDEAI+FFRANVFF NFD
Sbjct: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPVSEQDKTDIVDEAITFFRANVFFTNFD 60

Query: 128 IKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP----- 187
           IKSPADKLLIYLTF+INVALKRLEGCRTL VG KAIINLGLE++PVPGE GFPFP     
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSL 120

Query: 188 -------ELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIV 226
                  ELFR+YLK++REETSGRLLSVAYRANGTPNKWWLAFAKRKFMN+V
Sbjct: 121 PQSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNVV 172

[Close]

BLAST of Cp4.1LG11g10520 vs. ExPASy Swiss-Prot
Match: Q3T035 (Actin-related protein 2/3 complex subunit 3 OS=Bos taurus OX=9913 GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 139.4 bits (350), Expect = 4.9e-32
Identity = 74/170 (43.53%), Postives = 106/170 (62.35%), Query Frame = 0


Query: 70  HHSSFVDEEGISKACG-CPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFDI 129
           +HSS +D +  +K  G   L P++S   GPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct: 4   YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 63

Query: 130 KSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPF------- 189
           K+ AD+ LIY+T +I+  LK+L+ C + + G K +  LG+ N P+PGE GFP        
Sbjct: 64  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 123

Query: 190 -----PELFRDYLKEIREETSGRLLSVAY-RANGTPNKWWLAFAKRKFMN 224
                 E+ R YL+++R+ET  RL    +   N  P+KWW  F KR+FMN
Sbjct: 124 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170

[Close]

BLAST of Cp4.1LG11g10520 vs. ExPASy Swiss-Prot
Match: O15145 (Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens OX=9606 GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 139.4 bits (350), Expect = 4.9e-32
Identity = 74/170 (43.53%), Postives = 106/170 (62.35%), Query Frame = 0


Query: 70  HHSSFVDEEGISKACG-CPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFDI 129
           +HSS +D +  +K  G   L P++S   GPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct: 4   YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 63

Query: 130 KSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPF------- 189
           K+ AD+ LIY+T +I+  LK+L+ C + + G K +  LG+ N P+PGE GFP        
Sbjct: 64  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 123

Query: 190 -----PELFRDYLKEIREETSGRLLSVAY-RANGTPNKWWLAFAKRKFMN 224
                 E+ R YL+++R+ET  RL    +   N  P+KWW  F KR+FMN
Sbjct: 124 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170

[Close]

BLAST of Cp4.1LG11g10520 vs. ExPASy Swiss-Prot
Match: Q9JM76 (Actin-related protein 2/3 complex subunit 3 OS=Mus musculus OX=10090 GN=Arpc3 PE=1 SV=3)

HSP 1 Score: 138.7 bits (348), Expect = 8.4e-32
Identity = 74/170 (43.53%), Postives = 106/170 (62.35%), Query Frame = 0


Query: 70  HHSSFVDEEGISKACG-CPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFDI 129
           +HSS +D +  +K  G   L PL+S   GPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct: 4   YHSSLMDPD--TKLIGNMALLPLRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 63

Query: 130 KSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPF------- 189
           K+ AD+ LIY+T +I+  LK+L+ C + + G K +  LG+ N P+PGE GFP        
Sbjct: 64  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 123

Query: 190 -----PELFRDYLKEIREETSGRLLSVAY-RANGTPNKWWLAFAKRKFMN 224
                 E+ R YL+++R+ET  RL    +   +  P+KWW  F KR+FMN
Sbjct: 124 ASKQEDEMMRAYLQQLRQETGLRLCEKVFDPQSDKPSKWWTCFVKRQFMN 170

[Close]

BLAST of Cp4.1LG11g10520 vs. ExPASy Swiss-Prot
Match: A1DPK7 (Actin-related protein 2/3 complex subunit 3-A OS=Xenopus laevis OX=8355 GN=arpc3-a PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.3e-29
Identity = 65/151 (43.05%), Postives = 94/151 (62.25%), Query Frame = 0


Query: 88  LFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFDIKSPADKLLIYLTFHINVAL 147
           + P++S   GPAP   +D TDI+DEAI +F+ANVFF+N++IK+ AD+ LIY+T +I+  L
Sbjct: 21  MLPIRSQFKGPAPRETKD-TDIIDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECL 80

Query: 148 KRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPF------------PELFRDYLKEIREE 207
           K+L+ C +   G K +  LG+ N P+PGE GFP              E+ R YL+++R+E
Sbjct: 81  KKLQKCNSKGQGEKEMYTLGITNFPIPGEPGFPLNAMYVKPSNKQEDEVMRAYLQQLRQE 140

Query: 208 TSGRLLSVAY-RANGTPNKWWLAFAKRKFMN 224
           T  RL    +      P+KWW  F KR+FMN
Sbjct: 141 TGLRLCDKVFDPQTDKPSKWWTCFVKRQFMN 170

[Close]

BLAST of Cp4.1LG11g10520 vs. NCBI nr
Match: KAG7030362.1 (Actin-related protein 2/3 complex subunit 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 452 bits (1162), Expect = 5.87e-160
Identity = 225/227 (99.12%), Postives = 225/227 (99.12%), Query Frame = 0


Query: 1   SPLPLADIPVAIPTPIHLSEQKTLRTSLKLSLREIDPLTLTFSPKIFAVEKNLDLVQDCK 60
           SPLPLADIPVAIPT IHLSEQKTLRTSLKLSLREIDPLTLTFSPKIFAVEKNLDLVQDCK
Sbjct: 13  SPLPLADIPVAIPTRIHLSEQKTLRTSLKLSLREIDPLTLTFSPKIFAVEKNLDLVQDCK 72

Query: 61  TLIIEKNMVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVF 120
           TLIIEKNMVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVF
Sbjct: 73  TLIIEKNMVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVF 132

Query: 121 FRNFDIKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP 180
           FRNFDIKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP
Sbjct: 133 FRNFDIKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP 192

Query: 181 ELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 227
           ELFRDYLKEIREET GRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP
Sbjct: 193 ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 239

[Close]

BLAST of Cp4.1LG11g10520 vs. NCBI nr
Match: KAG6599373.1 (Monogalactosyldiacylglycerol synthase 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 366 bits (939), Expect = 9.04e-121
Identity = 184/203 (90.64%), Postives = 185/203 (91.13%), Query Frame = 0


Query: 37  PLTLTFSPKIFAVEKNLDLVQDCKTLIIEKNMVHHSSFVDEEGISKACGCPLFPLKSHGP 96
           PL  T +  IFAVEKNLDLVQDCKTLIIEKNMVHHSSFVDEEGISKACGCPLFPLKSHGP
Sbjct: 408 PLIGTENSPIFAVEKNLDLVQDCKTLIIEKNMVHHSSFVDEEGISKACGCPLFPLKSHGP 467

Query: 97  APDSDQDKTDIVDEAISFFRANVFFRNFDIKSPADKLLIYLTFHINVALKRLEGCRTLTV 156
           APDSDQDKTDIVDEAISFFRANVFFRNFDIKSPADKLLIYLTFHINVALKRLEGCRTLTV
Sbjct: 468 APDSDQDKTDIVDEAISFFRANVFFRNFDIKSPADKLLIYLTFHINVALKRLEGCRTLTV 527

Query: 157 GNKAIINLGLENVPVPGEQGFPFP------------ELFRDYLKEIREETSGRLLSVAYR 216
           GNKAIINLGLENVPVPGEQGFPFP            ELFRDYLKEIREET GRLLSVAYR
Sbjct: 528 GNKAIINLGLENVPVPGEQGFPFPGLFPIPKSNGEAELFRDYLKEIREETCGRLLSVAYR 587

Query: 217 ANGTPNKWWLAFAKRKFMNIVTP 227
           ANGTPNKWWLAFAKRKFMNIVTP
Sbjct: 588 ANGTPNKWWLAFAKRKFMNIVTP 610

[Close]

BLAST of Cp4.1LG11g10520 vs. NCBI nr
Match: XP_023546743.1 (actin-related protein 2/3 complex subunit 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323 bits (829), Expect = 3.05e-110
Identity = 160/172 (93.02%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 68  MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 127
           MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK
Sbjct: 1   MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 60

Query: 128 SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP------- 187
           SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP       
Sbjct: 61  SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFPGLFPIPK 120

Query: 188 -----ELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 227
                ELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP
Sbjct: 121 SNGEAELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 172

[Close]

BLAST of Cp4.1LG11g10520 vs. NCBI nr
Match: XP_022946311.1 (actin-related protein 2/3 complex subunit 3-like [Cucurbita moschata] >XP_022946312.1 actin-related protein 2/3 complex subunit 3-like [Cucurbita moschata])

HSP 1 Score: 322 bits (824), Expect = 1.76e-109
Identity = 159/172 (92.44%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 68  MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 127
           MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK
Sbjct: 1   MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 60

Query: 128 SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP------- 187
           SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP       
Sbjct: 61  SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFPGLFPIPK 120

Query: 188 -----ELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 227
                ELFRDYLKEIREET GRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP
Sbjct: 121 SNGEAELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 172

[Close]

BLAST of Cp4.1LG11g10520 vs. NCBI nr
Match: XP_022999051.1 (actin-related protein 2/3 complex subunit 3-like [Cucurbita maxima])

HSP 1 Score: 315 bits (807), Expect = 6.84e-107
Identity = 155/172 (90.12%), Postives = 158/172 (91.86%), Query Frame = 0


Query: 68  MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 127
           MVHHSSFVDEEGI+KACGCPL+PLKSHGPAPD DQDKTDIVDEAISFFRANVFFRNFDIK
Sbjct: 1   MVHHSSFVDEEGINKACGCPLYPLKSHGPAPDLDQDKTDIVDEAISFFRANVFFRNFDIK 60

Query: 128 SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP------- 187
           SPADKLLIYLTFHINVALKRLEGCRTLTVG+KAIINLGLENVPVPGE GFPFP       
Sbjct: 61  SPADKLLIYLTFHINVALKRLEGCRTLTVGSKAIINLGLENVPVPGEHGFPFPGLFPIPK 120

Query: 188 -----ELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 227
                ELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP
Sbjct: 121 SNGEAELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 172

[Close]

BLAST of Cp4.1LG11g10520 vs. ExPASy TrEMBL
Match: A0A6J1G3D5 (Actin-related protein 2/3 complex subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111450430 PE=3 SV=1)

HSP 1 Score: 322 bits (824), Expect = 8.52e-110
Identity = 159/172 (92.44%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 68  MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 127
           MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK
Sbjct: 1   MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 60

Query: 128 SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP------- 187
           SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP       
Sbjct: 61  SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFPGLFPIPK 120

Query: 188 -----ELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 227
                ELFRDYLKEIREET GRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP
Sbjct: 121 SNGEAELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 172

[Close]

BLAST of Cp4.1LG11g10520 vs. ExPASy TrEMBL
Match: A0A6J1KBW6 (Actin-related protein 2/3 complex subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111493556 PE=3 SV=1)

HSP 1 Score: 315 bits (807), Expect = 3.31e-107
Identity = 155/172 (90.12%), Postives = 158/172 (91.86%), Query Frame = 0


Query: 68  MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 127
           MVHHSSFVDEEGI+KACGCPL+PLKSHGPAPD DQDKTDIVDEAISFFRANVFFRNFDIK
Sbjct: 1   MVHHSSFVDEEGINKACGCPLYPLKSHGPAPDLDQDKTDIVDEAISFFRANVFFRNFDIK 60

Query: 128 SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP------- 187
           SPADKLLIYLTFHINVALKRLEGCRTLTVG+KAIINLGLENVPVPGE GFPFP       
Sbjct: 61  SPADKLLIYLTFHINVALKRLEGCRTLTVGSKAIINLGLENVPVPGEHGFPFPGLFPIPK 120

Query: 188 -----ELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 227
                ELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP
Sbjct: 121 SNGEAELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 172

[Close]

BLAST of Cp4.1LG11g10520 vs. ExPASy TrEMBL
Match: A0A1S3C5N9 (Actin-related protein 2/3 complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103496939 PE=3 SV=1)

HSP 1 Score: 297 bits (761), Expect = 3.59e-100
Identity = 149/174 (85.63%), Postives = 154/174 (88.51%), Query Frame = 0


Query: 68  MVHHSSFVDEEGISKACGCPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFD 127
           MVHHSSFVDEEGISKACGCPL PLKSH  GPAP SDQDKTDIVDEAI+FFRANVFFRNFD
Sbjct: 1   MVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60

Query: 128 IKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP----- 187
           IKSPADKLLIYLTF+INVALKRLEGCRTL VG KAIINLGLENVPVPGE GFPFP     
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGESGFPFPGLFPI 120

Query: 188 -------ELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 227
                  ELFR+YLK+IREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNI+ P
Sbjct: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 174

[Close]

BLAST of Cp4.1LG11g10520 vs. ExPASy TrEMBL
Match: A0A6J1HLS5 (Actin-related protein 2/3 complex subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111465702 PE=3 SV=1)

HSP 1 Score: 295 bits (756), Expect = 2.07e-99
Identity = 148/174 (85.06%), Postives = 154/174 (88.51%), Query Frame = 0


Query: 68  MVHHSSFVDEEGISKACGCPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFD 127
           MVHHSSFVDEEGISKACGCPL PLKSH  GPAP SDQDKTDIVDEAI+FFRANVFFRNFD
Sbjct: 1   MVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60

Query: 128 IKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP----- 187
           IKSPADKLLIYLTF+INVALKRLEGCRTL VG KAIINLGLENVPVPGE GFPFP     
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPI 120

Query: 188 -------ELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 227
                  ELFR+YL++IREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNI+ P
Sbjct: 121 PQSNEEAELFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 174

[Close]

BLAST of Cp4.1LG11g10520 vs. ExPASy TrEMBL
Match: A0A6J1FCE9 (Actin-related protein 2/3 complex subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111444343 PE=3 SV=1)

HSP 1 Score: 295 bits (756), Expect = 2.07e-99
Identity = 148/174 (85.06%), Postives = 154/174 (88.51%), Query Frame = 0


Query: 68  MVHHSSFVDEEGISKACGCPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFD 127
           MVHHSSFVDEEGISKACGCPL PLKSH  GPAP SDQDKTDIVDEAI+FFRANVFFRNFD
Sbjct: 1   MVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60

Query: 128 IKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP----- 187
           IKSPADKLLIYLTF+INVALKRLEGCRTL VG KAIINLGLENVPVPGE GFPFP     
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPI 120

Query: 188 -------ELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 227
                  ELFR+YL++IREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNI+ P
Sbjct: 121 PQSNEEAELFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 174

[Close]

BLAST of Cp4.1LG11g10520 vs. TAIR 10
Match: AT1G60430.1 (actin-related protein C3 )

HSP 1 Score: 289.3 bits (739), Expect = 2.7e-78
Identity = 140/172 (81.40%), Postives = 152/172 (88.37%), Query Frame = 0


Query: 68  MVHHSSFVDEEGISKACGCPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFD 127
           MV+HSSFVDEEG++KACGCPL PLKSH  GPAP S+QDKTDIVDEAI+FFRANVFF NFD
Sbjct: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPVSEQDKTDIVDEAITFFRANVFFTNFD 60

Query: 128 IKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP----- 187
           IKSPADKLLIYLTF+INVALKRLEGCRTL VG KAIINLGLE++PVPGE GFPFP     
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSL 120

Query: 188 -------ELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIV 226
                  ELFR+YLK++REETSGRLLSVAYRANGTPNKWWLAFAKRKFMN+V
Sbjct: 121 PQSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNVV 172

[Close]

BLAST of Cp4.1LG11g10520 vs. TAIR 10
Match: AT1G60430.2 (actin-related protein C3 )

HSP 1 Score: 289.3 bits (739), Expect = 2.7e-78
Identity = 140/172 (81.40%), Postives = 152/172 (88.37%), Query Frame = 0


Query: 68  MVHHSSFVDEEGISKACGCPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFD 127
           MV+HSSFVDEEG++KACGCPL PLKSH  GPAP S+QDKTDIVDEAI+FFRANVFF NFD
Sbjct: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPVSEQDKTDIVDEAITFFRANVFFTNFD 60

Query: 128 IKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP----- 187
           IKSPADKLLIYLTF+INVALKRLEGCRTL VG KAIINLGLE++PVPGE GFPFP     
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSL 120

Query: 188 -------ELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIV 226
                  ELFR+YLK++REETSGRLLSVAYRANGTPNKWWLAFAKRKFMN+V
Sbjct: 121 PQSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNVV 172

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g10520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1ECJ7	3.9e-77	81.40	Actin-related protein 2/3 complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
Q3T035	4.9e-32	43.53	Actin-related protein 2/3 complex subunit 3 OS=Bos taurus OX=9913 GN=ARPC3 PE=1 ...	[more]
O15145	4.9e-32	43.53	Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens OX=9606 GN=ARPC3 PE=...	[more]
Q9JM76	8.4e-32	43.53	Actin-related protein 2/3 complex subunit 3 OS=Mus musculus OX=10090 GN=Arpc3 PE...	[more]
A1DPK7	2.3e-29	43.05	Actin-related protein 2/3 complex subunit 3-A OS=Xenopus laevis OX=8355 GN=arpc3...	[more]

BLAST of Cp4.1LG11g10520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030362.1	5.87e-160	99.12	Actin-related protein 2/3 complex subunit 3, partial [Cucurbita argyrosperma sub...	[more]
KAG6599373.1	9.04e-121	90.64	Monogalactosyldiacylglycerol synthase 2, chloroplastic, partial [Cucurbita argyr...	[more]
XP_023546743.1	3.05e-110	93.02	actin-related protein 2/3 complex subunit 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022946311.1	1.76e-109	92.44	actin-related protein 2/3 complex subunit 3-like [Cucurbita moschata] >XP_022946...	[more]
XP_022999051.1	6.84e-107	90.12	actin-related protein 2/3 complex subunit 3-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG11g10520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G3D5	8.52e-110	92.44	Actin-related protein 2/3 complex subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1KBW6	3.31e-107	90.12	Actin-related protein 2/3 complex subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A1S3C5N9	3.59e-100	85.63	Actin-related protein 2/3 complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
A0A6J1HLS5	2.07e-99	85.06	Actin-related protein 2/3 complex subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1FCE9	2.07e-99	85.06	Actin-related protein 2/3 complex subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of Cp4.1LG11g10520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60430.1	2.7e-78	81.40	actin-related protein C3	[more]
AT1G60430.2	2.7e-78	81.40	actin-related protein C3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007204	Actin-related protein 2/3 complex subunit 3	PFAM	PF04062	P21-Arc	coord: 70..223 e-value: 1.4E-48 score: 165.3
IPR007204	Actin-related protein 2/3 complex subunit 3	PANTHER	PTHR12391	ARP2/3 COMPLEX 21 KD SUBUNIT	coord: 68..225
IPR036753	Actin-related protein 2/3 complex subunit 3 superfamily	GENE3D	1.10.1760.10		coord: 68..226 e-value: 1.4E-51 score: 176.8
IPR036753	Actin-related protein 2/3 complex subunit 3 superfamily	SUPERFAMILY	69060	Arp2/3 complex 21 kDa subunit ARPC3	coord: 70..223
None	No IPR available	PANTHER	PTHR12391:SF0	ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 3	coord: 68..225

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g10520.1	Cp4.1LG11g10520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034314	Arp2/3 complex-mediated actin nucleation
biological_process	GO:0030833	regulation of actin filament polymerization
cellular_component	GO:0005885	Arp2/3 protein complex
cellular_component	GO:0042995	cell projection
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005856	cytoskeleton
molecular_function	GO:0051015	actin filament binding