Cp4.1LG11g09220 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG11g09220
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description40S ribosomal protein S25
LocationCp4.1LG11: 7711120 .. 7713919 (-)
RNA-Seq ExpressionCp4.1LG11g09220
SyntenyCp4.1LG11g09220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGCCGATATCTTGTTTATGAAGCCCATACTATAAATATCGAAACCCTAGTTCTTAGTGAAGGCTAGCTATAAACCATCGCTAAATTCATTCCGCGTGTCTCGTCTCTTTTCTTCTGCAGCGGCATCTTCTTCAGCACATCCAACTCCGGCGGTGCAACTTCGATACGATGGTAAAATTCTGGTCTACTTTTTCTATTTTTGGTATCTGGAATTACAGTTTGGTGTTTTATGTTTTTCGTTTTGATTAATCTAGGCGCCAAAGAAGGATAAGGCTCCTCCACCGTCTTCCAAGCCTGCTAAATCTGGCGGAGGGAAGCAGAAGAAGAAGGTCACATTCTTCAAACTATATCTTTTACTTTATTTAAATTCATAGCTGTATCATATAGTAGGTGAACTGTATTTTGAATCATGCCGGAGTTATTGTTAGGAATGAGGTTATTTCAACTCTTTATTGAAGTATTTGGTTCTCCGAATGTTTCTCTGTTACAAGTGGTGTAGATCTTGTTTTTTTATGTTTGGATACTGCTGAGGCTATTTTTGGGAATGAGATTGTTTCTCAGATTTCGAAGTTTAATAGCATGTCTAATCCCTCCTCAAGGTGGCCTCGGGGCATAAATCTCAAACGATTTTGAAAATATTACAGATTGTTGTTTAGATGCATCTATGATACTATGATGTCTTAGGTGGAGAAGGCTTCTATCAGTTTTACTAAATTTTTGTTTTGTATTAAACTTTATGTGGACAATCATGATACTTCGAAGCAACTAAAGATGAGGAAAATTAGTGCTCTGGAGCTCATGAACTTGTAATTTGGGTTTTCGGTTCGTTTTTGAAAATCAAAATCGCGATTGTGATTTCAGGGTAGAATATCTCGTGCTATTTAGATTTCTTGTGAACTGTAATATTTTGATTCTAAATGCTGAGATTTTGCAGTTTTCTCATTTTTAATCCTGTTTGTTCATACAACAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTTGTTCGATCAAGGAACATATGACAAGCTTCTCGTTGAAGTTCCCAAGTACAAGCTTGTCACTCCTTCAATCTTGTCCGATAGGTTGAGGGTACGTTTCTAAACCTCGTCTCTTCCATAATATAAAATTTTTTTCAATGATTTTTCTTGCTTGCATACTCCTTCACTATGATCTAATTCTAGTTATTTGTCACTTGTGATCTCGATACGATCATTATCTATCCTTTTTCATTCAAACCTATGTTTAAAACATTCAATCCATTCATTCTAAGATGCACACTTTAAAAACATCGTGCTAGCACTTGTTCGACACAGATCAAACACTTGTTAGCCCAATGGATATGTGTTACAACACTGGTTTAACCAAATCATTATGCGTCCAACATTTATTAGATAATTGAACATTTGTTAAGTATATAACAAATAATAAATTTGTAACATATAAATGAACAAACCTATCAACTTCTAATTTTCTTCTGATATATTTTTAGAAAGTGTGTATTTTATTAAACATGTCATAGCCATGTCCTATATTTTCCGAAAATGGTGACATTGTGTACGTCGCATCTGTGTCTCGGTCTCATATCTGTATCTGTGTCTCTTAGCATCCAATTAACTAGTGAACTTTGTTTATTCTGAACTCCCTATATTGGAAACCCCATGATTCTTTTTACGAGTGTTGGATGATGAAAGTCCCACATCGGCTAATTTAGGGAATGATCATGGGTTTATAAGTGAGGAATACTAACTCCATTGGTATGAGGCCTTTTGGGGAAACCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTAGACAATATCATACCATTATGGAGAGTCGTGTTCGTCTAACATGGTATCAGAGCCATGCCCTAAACTTAGTCGTGCCAATAGATTGGTAAATCCTCAAATATCGAACAAAGAACTCCTAAAGAAAAGGAGCCAAGGCCCTCCTTGAAGGCAGTAAAAAATGACTAAGACTCCAAAGGAGTCGAGCCTCGATTAAGGGGAGGCGCACTTTGTTCGAGGGGAGGTGTTGAATGATGGAAGTCCCACATCGGCTAATTTAGGGAATAGTCCTGAGTTTATAAGTGAGGAATACTAACTCCATTGGTACGAGGCCTTTTGGGGAAACCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTAGACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTAACTACGAGTTCGCAGTCTTGAAATAAAAAAGAACTTCAGAGTTCTTCTGTATTCGTTTCGTGTTGTATTTGAACCTGTTGGCTGCCGCCTAACTCCGAGTTCAATTTTCAGATCAATGGATCTCTTGCACGAAGAGCAATCAAGGATTTGATGGCCAGAGGTCTCATCAGAATGGTCTCTGCACATGGCAGTCAGGAGATTTACACAAGGGCCACCAATACCTAAAATTCCTTCAATCTTTAGAGTTGCCTGCCATGAATTAGCGTCGTTACTCTAGTTTTTGCTTCTTTGTTTCAATGTCTCCTTTAGATGGATGCTATAATTTTGCAATTTGTGTCTGATGATATCTTCCCTGTTAATCACTACTTTTAATATTTTATCAAGTTTCCAAACATTCGGGAAGTTTATTGATTCCTTCATAGTTATTTTGAATCTGCACTCGGGTTGTCGGTCGGAGTCGGTTTTTGCTCTAAACGTATCATTAGACTTTGAAATATTTGAAACACAATTAAAAAGAATCATCTGTTTGGTTGTTAGAATATGTTTATAAGGGGTGGATGGCTTGATTGTTGCCTTT

mRNA sequence

TGGGCCGATATCTTGTTTATGAAGCCCATACTATAAATATCGAAACCCTAGTTCTTAGTGAAGGCTAGCTATAAACCATCGCTAAATTCATTCCGCGTGTCTCGTCTCTTTTCTTCTGCAGCGGCATCTTCTTCAGCACATCCAACTCCGGCGGTGCAACTTCGATACGATGGCGCCAAAGAAGGATAAGGCTCCTCCACCGTCTTCCAAGCCTGCTAAATCTGGCGGAGGGAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTTGTTCGATCAAGGAACATATGACAAGCTTCTCGTTGAAGTTCCCAAGTACAAGCTTGTCACTCCTTCAATCTTGTCCGATAGGTTGAGGATCAATGGATCTCTTGCACGAAGAGCAATCAAGGATTTGATGGCCAGAGGTCTCATCAGAATGGTCTCTGCACATGGCAGTCAGGAGATTTACACAAGGGCCACCAATACCTAAAATTCCTTCAATCTTTAGAGTTGCCTGCCATGAATTAGCGTCGTTACTCTAGTTTTTGCTTCTTTGTTTCAATGTCTCCTTTAGATGGATGCTATAATTTTGCAATTTGTGTCTGATGATATCTTCCCTGTTAATCACTACTTTTAATATTTTATCAAGTTTCCAAACATTCGGGAAGTTTATTGATTCCTTCATAGTTATTTTGAATCTGCACTCGGGTTGTCGGTCGGAGTCGGTTTTTGCTCTAAACGTATCATTAGACTTTGAAATATTTGAAACACAATTAAAAAGAATCATCTGTTTGGTTGTTAGAATATGTTTATAAGGGGTGGATGGCTTGATTGTTGCCTTT

Coding sequence (CDS)

ATGGCGCCAAAGAAGGATAAGGCTCCTCCACCGTCTTCCAAGCCTGCTAAATCTGGCGGAGGGAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTTGTTCGATCAAGGAACATATGACAAGCTTCTCGTTGAAGTTCCCAAGTACAAGCTTGTCACTCCTTCAATCTTGTCCGATAGGTTGAGGATCAATGGATCTCTTGCACGAAGAGCAATCAAGGATTTGATGGCCAGAGGTCTCATCAGAATGGTCTCTGCACATGGCAGTCAGGAGATTTACACAAGGGCCACCAATACCTAA

Protein sequence

MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT
Homology
[Close]
BLAST of Cp4.1LG11g09220 vs. ExPASy Swiss-Prot
Match: Q9SIK2 (40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 2.6e-47
Identity = 97/108 (89.81%), Postives = 104/108 (96.30%), Query Frame = 0 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+GLIRMVSAH SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG11g09220 vs. ExPASy Swiss-Prot
Match: Q9T029 (40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.4e-46
Identity = 94/108 (87.04%), Postives = 103/108 (95.37%), Query Frame = 0 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+G+IRMV+AH SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG11g09220 vs. ExPASy Swiss-Prot
Match: Q8GYL5 (40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2)

HSP 1 Score: 181.0 bits (458), Expect = 7.0e-45
Identity = 94/107 (87.85%), Postives = 101/107 (94.39%), Query Frame = 0 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATN 108
           +TPSILSDRLRINGSLARRAI++LMA+G IRMVSAH SQ+IYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]
BLAST of Cp4.1LG11g09220 vs. ExPASy Swiss-Prot
Match: P46301 (40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 9.2e-45
Identity = 94/108 (87.04%), Postives = 102/108 (94.44%), Query Frame = 0 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKK +APPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFD+ TYDKLL E PKYKL
Sbjct: 1   MAPKKAQAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPS+LSDRLRI+GSLAR+AI+DLMARG IRMVSAH SQ+IYTRATNT
Sbjct: 61  ITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG11g09220 vs. ExPASy Swiss-Prot
Match: Q9SIW5 (40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3)

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-42
Identity = 90/106 (84.91%), Postives = 97/106 (91.51%), Query Frame = 0 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKL+ E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRAT 107
           +TPSILSDRLRINGSLAR+AI+DLM +G IRMVS H SQ+I TRAT
Sbjct: 61  ITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 106

[Close]
BLAST of Cp4.1LG11g09220 vs. NCBI nr
Match: XP_022961406.1 (40S ribosomal protein S25-2-like [Cucurbita moschata] >XP_022968822.1 40S ribosomal protein S25-2-like [Cucurbita maxima] >XP_023545343.1 40S ribosomal protein S25-2-like [Cucurbita pepo subsp. pepo] >KAG6590412.1 40S ribosomal protein S25-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023962.1 40S ribosomal protein S25-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206 bits (523), Expect = 1.33e-66
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 108
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 108

[Close]
BLAST of Cp4.1LG11g09220 vs. NCBI nr
Match: XP_016900931.1 (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo] >XP_038878537.1 40S ribosomal protein S25-2 [Benincasa hispida] >TYK10188.1 40S ribosomal protein S25-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 203 bits (517), Expect = 1.09e-65
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 108
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAH SQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]
BLAST of Cp4.1LG11g09220 vs. NCBI nr
Match: XP_022945101.1 (40S ribosomal protein S25-2-like [Cucurbita moschata] >XP_022968354.1 40S ribosomal protein S25-2 [Cucurbita maxima] >XP_023541368.1 40S ribosomal protein S25-2-like [Cucurbita pepo subsp. pepo] >KAG7012952.1 40S ribosomal protein S25-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 202 bits (514), Expect = 3.14e-65
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 108
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVS+H SQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 108

[Close]
BLAST of Cp4.1LG11g09220 vs. NCBI nr
Match: XP_022150617.1 (40S ribosomal protein S25-2-like [Momordica charantia])

HSP 1 Score: 202 bits (514), Expect = 3.14e-65
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPP+SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 108
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAH SQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]
BLAST of Cp4.1LG11g09220 vs. NCBI nr
Match: KAG6573888.1 (40S ribosomal protein S25-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 202 bits (514), Expect = 3.47e-64
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 75  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 134

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 108
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVS+H SQEIYTRATNT
Sbjct: 135 VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 182

[Close]
BLAST of Cp4.1LG11g09220 vs. ExPASy TrEMBL
Match: A0A6J1HUK6 (40S ribosomal protein S25 OS=Cucurbita maxima OX=3661 GN=LOC111467942 PE=3 SV=1)

HSP 1 Score: 206 bits (523), Expect = 6.43e-67
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 108
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 108

[Close]
BLAST of Cp4.1LG11g09220 vs. ExPASy TrEMBL
Match: A0A6J1HAA0 (40S ribosomal protein S25 OS=Cucurbita moschata OX=3662 GN=LOC111461987 PE=3 SV=1)

HSP 1 Score: 206 bits (523), Expect = 6.43e-67
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 108
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 108

[Close]
BLAST of Cp4.1LG11g09220 vs. ExPASy TrEMBL
Match: A0A5D3CG38 (40S ribosomal protein S25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003330 PE=3 SV=1)

HSP 1 Score: 203 bits (517), Expect = 5.29e-66
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 108
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAH SQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]
BLAST of Cp4.1LG11g09220 vs. ExPASy TrEMBL
Match: A0A1S4DY71 (40S ribosomal protein S25 OS=Cucumis melo OX=3656 GN=LOC103492227 PE=3 SV=1)

HSP 1 Score: 203 bits (517), Expect = 5.29e-66
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 108
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAH SQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]
BLAST of Cp4.1LG11g09220 vs. ExPASy TrEMBL
Match: A0A6J1HZE7 (40S ribosomal protein S25 OS=Cucurbita maxima OX=3661 GN=LOC111467614 PE=3 SV=1)

HSP 1 Score: 202 bits (514), Expect = 1.52e-65
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 108
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVS+H SQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 108

[Close]
BLAST of Cp4.1LG11g09220 vs. TAIR 10
Match: AT2G21580.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 189.1 bits (479), Expect = 1.8e-48
Identity = 97/108 (89.81%), Postives = 104/108 (96.30%), Query Frame = 0 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+GLIRMVSAH SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG11g09220 vs. TAIR 10
Match: AT4G39200.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 184.5 bits (467), Expect = 4.5e-47
Identity = 94/108 (87.04%), Postives = 103/108 (95.37%), Query Frame = 0 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+G+IRMV+AH SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG11g09220 vs. TAIR 10
Match: AT2G21580.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 183.3 bits (464), Expect = 1.0e-46
Identity = 96/108 (88.89%), Postives = 103/108 (95.37%), Query Frame = 0 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNNMVLFDQGTYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQ-KKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+GLIRMVSAH SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 107

[Close]
BLAST of Cp4.1LG11g09220 vs. TAIR 10
Match: AT4G34555.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 181.0 bits (458), Expect = 5.0e-46
Identity = 94/107 (87.85%), Postives = 101/107 (94.39%), Query Frame = 0 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATN 108
           +TPSILSDRLRINGSLARRAI++LMA+G IRMVSAH SQ+IYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]
BLAST of Cp4.1LG11g09220 vs. TAIR 10
Match: AT4G39200.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 178.7 bits (452), Expect = 2.5e-45
Identity = 93/108 (86.11%), Postives = 102/108 (94.44%), Query Frame = 0 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQ-KKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+G+IRMV+AH SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 107

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g09220 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SIK22.6e-4789.8140S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1[more]
Q9T0296.4e-4687.0440S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1[more]
Q8GYL57.0e-4587.8540S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2[more]
P463019.2e-4587.0440S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1[more]
Q9SIW51.1e-4284.9140S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3[more]
BLAST of Cp4.1LG11g09220 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022961406.11.33e-66100.0040S ribosomal protein S25-2-like [Cucurbita moschata] >XP_022968822.1 40S riboso... [more]
XP_016900931.11.09e-6599.07PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo] >XP_038878537.1 40S r... [more]
XP_022945101.13.14e-6598.1540S ribosomal protein S25-2-like [Cucurbita moschata] >XP_022968354.1 40S riboso... [more]
XP_022150617.13.14e-6598.1540S ribosomal protein S25-2-like [Momordica charantia][more]
KAG6573888.13.47e-6498.1540S ribosomal protein S25-2, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Cp4.1LG11g09220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HUK66.43e-67100.0040S ribosomal protein S25 OS=Cucurbita maxima OX=3661 GN=LOC111467942 PE=3 SV=1[more]
A0A6J1HAA06.43e-67100.0040S ribosomal protein S25 OS=Cucurbita moschata OX=3662 GN=LOC111461987 PE=3 SV=... [more]
A0A5D3CG385.29e-6699.0740S ribosomal protein S25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S4DY715.29e-6699.0740S ribosomal protein S25 OS=Cucumis melo OX=3656 GN=LOC103492227 PE=3 SV=1[more]
A0A6J1HZE71.52e-6598.1540S ribosomal protein S25 OS=Cucurbita maxima OX=3661 GN=LOC111467614 PE=3 SV=1[more]
BLAST of Cp4.1LG11g09220 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G21580.11.8e-4889.81Ribosomal protein S25 family protein [more]
AT4G39200.14.5e-4787.04Ribosomal protein S25 family protein [more]
AT2G21580.21.0e-4688.89Ribosomal protein S25 family protein [more]
AT4G34555.15.0e-4687.85Ribosomal protein S25 family protein [more]
AT4G39200.22.5e-4586.11Ribosomal protein S25 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004977Ribosomal protein S25PFAMPF03297Ribosomal_S25coord: 7..105
e-value: 7.5E-42
score: 141.6
IPR004977Ribosomal protein S25PANTHERPTHR1285040S RIBOSOMAL PROTEIN S25coord: 2..108
NoneNo IPR availableGENE3D3.30.63.20coord: 21..108
e-value: 1.3E-40
score: 139.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availablePANTHERPTHR12850:SF31BNAA04G12260D PROTEINcoord: 2..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g09220.1Cp4.1LG11g09220.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0022627 cytosolic small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome