Cp4.1LG11g08530 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g08530
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	MYB transcription factor
Location	Cp4.1LG11: 6936819 .. 6938516 (-)
RNA-Seq Expression	Cp4.1LG11g08530
Synteny	Cp4.1LG11g08530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCCTTCATATATGATTTAAGTGGGTTTGGAGTTGGAGGAGGAGGCCTTATGGGAAGACACTCTTGTTGTTTCAAGCAGAAGCTGAGGAAAGGCCTTTGGTCTCCTGAAGAAGATGAGAAGCTTCTTAACTATATCACCAAACATGGCCATGGCTGTTGGAGCACTGTCCCTAAACTTGCAGGTCATATTTCTATATCCCTTTTTTATTTCTTTTACTTTCTCTCTCTCGGTCGAAAAAGAGAGAGAATTGGATAAGTTTTCGTTCCGGGATTCGAACTTTTGAGTTCAAAAGATGGTATAGATGTCTTAATTGCTCAGGTGTGTTCATGGTGGATGAGGGTTGTGAGGAGGGAGAGTTGAATGCTGAAAAAAGAGAGATAATTGACAAATTTTCGTTCCGGAATTCGAACTTTTGATTTTGAAAGAAGGTATAGATGTCTTAACCGCTCAGGTGTGTTTATGGTGGATGAGGGTTGTGAGGAGAGAGAGTTGAATGCCAAAAAAATGAGAGAATTGACAAATTTTCGTTCGAGAATTTGAACTTTTGATTTCAAAAGGACGTACGGATGTCGTTCATGGTGGATAAAGGGTTGTGTGGAGAGAGAATTGAACACCAAAAAAAAGAGAGTTGATAAATTTTCAGTCGGGAAACGTAAAGATACTGTTCATGGTGGATAAACGTAAAGATACTGTTCATGGTGGACGGAGGGTTGTGAGGAGAGAGAGTTGAATGCCGAAAAAAGAGAAAATTGACAAATTTTTGTTCGAGAATTTGAACTTTTGATTTCGAAAGAAGGTACAGATGTCTTAACCGTTCAGGTGTGTTCATGGAGGACGAGGGTTGTGAGGAGGGAGAGTTGAACGCCTAAAAAAGAGAGAATTGACGAATTTTTGTGTAGGAGTTCGAACTTTTGATTTCAAAAAAACGTACATATGTCTTTAACCGTTCAGGGTCGTGAGGAGAGAGAGTTAAGGGAAGGAGAGAGAGATAACTCTTTTCTTTTTCTATTGACGAAATGGAAAAATGTTAACTTTTACGAGAACCCTTTTGGATCCACAGGCTTGCAAAGGTGTGGAAAGAGCTGTCGATTAAGATGGATCAATTACCTTAGACCAGATTTGAAAAGAGGCCCGTTCTCACAACAGGAAGAAGACTTAATCGTTGAGCTCCATTCAGTTCTAGGCAACAGGTTTGTTCTTCCATCTTCACTCTCGTTCTTAGTTTCAAACTCCGTTTAACCTATATTATCGACTCAGATGGTCACAAATTGCTGCTCAGCTACCGGGAAGAACAGATAACGAGATAAAGAATCTATGGAATTCGTGCATTAAAAAGAAGTTGAAGCAAAAAGGCATCGACCCGAACACTCACAAGCCGTATCTAGACCAAGAAACCAACAATAATGGCAAGAACAACAGCCTTATTATCACATCAAATGATCAAAAAAGCCATGAAAAAGCTTCCCCAATTCAAAGTCCAGACATGTCCACCACTACTTTTGAGGCCTTTTCAAATTTATTCTCCCCATCTCTCAATTCATGTGCTGTAGCTCCAAGTTCTACTTCTCAAGTTGTTCATAATACCAACAACAATGGCTTCTTATGGCAGCCAGATGAGTTTCTTTCCGCTCCCTCCGACCTCATGAGAAGTGATTGGCATCGTCACCCGACCCTCCAACCCGAACTCTTTTGGACC

mRNA sequence

TCTCCTTCATATATGATTTAAGTGGGTTTGGAGTTGGAGGAGGAGGCCTTATGGGAAGACACTCTTGTTGTTTCAAGCAGAAGCTGAGGAAAGGCCTTTGGTCTCCTGAAGAAGATGAGAAGCTTCTTAACTATATCACCAAACATGGCCATGGCTGTTGGAGCACTGTCCCTAAACTTGCAGCTTCCCCAATTCAAAGTCCAGACATGTCCACCACTACTTTTGAGGCCTTTTCAAATTTATTCTCCCCATCTCTCAATTCATGTGCTGTAGCTCCAAGTTCTACTTCTCAAGTTGTTCATAATACCAACAACAATGGCTTCTTATGGCAGCCAGATGAGTTTCTTTCCGCTCCCTCCGACCTCATGAGAAGTGATTGGCATCGTCACCCGACCCTCCAACCCGAACTCTTTTGGACC

Coding sequence (CDS)

ATGGGAAGACACTCTTGTTGTTTCAAGCAGAAGCTGAGGAAAGGCCTTTGGTCTCCTGAAGAAGATGAGAAGCTTCTTAACTATATCACCAAACATGGCCATGGCTGTTGGAGCACTGTCCCTAAACTTGCAGCTTCCCCAATTCAAAGTCCAGACATGTCCACCACTACTTTTGAGGCCTTTTCAAATTTATTCTCCCCATCTCTCAATTCATGTGCTGTAGCTCCAAGTTCTACTTCTCAAGTTGTTCATAATACCAACAACAATGGCTTCTTATGGCAGCCAGATGAGTTTCTTTCCGCTCCCTCCGACCTCATGAGAAGTGATTGGCATCGTCACCCGACCCTCCAACCCGAACTCTTTTGGACC

Protein sequence

MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLAASPIQSPDMSTTTFEAFSNLFSPSLNSCAVAPSSTSQVVHNTNNNGFLWQPDEFLSAPSDLMRSDWHRHPTLQPELFWT

Homology

[Close]

BLAST of Cp4.1LG11g08530 vs. ExPASy Swiss-Prot
Match: Q8LPH6 (Transcription factor MYB86 OS=Arabidopsis thaliana OX=3702 GN=MYB86 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.2e-21
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 1  MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA 45
          MGRHSCCFKQKLRKGLWSPEEDEKLLNYIT+HGHGCWS+VPKLA
Sbjct: 1  MGRHSCCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLA 44

[Close]

BLAST of Cp4.1LG11g08530 vs. ExPASy Swiss-Prot
Match: Q8VZQ2 (Transcription factor MYB61 OS=Arabidopsis thaliana OX=3702 GN=MYB61 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.9e-19
Identity = 47/83 (56.63%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 1  MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLAASPIQSPDMSTTTFEA 60
          MGRHSCC+KQKLRKGLWSPEEDEKLL +IT HGHGCWS+VPKLA   +Q    S      
Sbjct: 1  MGRHSCCYKQKLRKGLWSPEEDEKLLTHITNHGHGCWSSVPKLAG--LQRCGKSCRL--R 60

Query: 61 FSNLFSPSLNSCAVAPSSTSQVV 84
          + N   P L   A +P   + +V
Sbjct: 61 WINYLRPDLKRGAFSPEEENLIV 79

[Close]

BLAST of Cp4.1LG11g08530 vs. ExPASy Swiss-Prot
Match: Q9SPG3 (Transcription factor MYB26 OS=Arabidopsis thaliana OX=3702 GN=MYB26 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.8e-16
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 1  MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLAAS 47
          MG HSCC KQK+++GLWSPEEDEKL+NYI  +GHGCWS+VPK A +
Sbjct: 1  MGHHSCCNKQKVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAGT 46

[Close]

BLAST of Cp4.1LG11g08530 vs. ExPASy Swiss-Prot
Match: Q9S9Z2 (Transcription factor MYB93 OS=Arabidopsis thaliana OX=3702 GN=MYB93 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.4e-11
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 1  MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA 45
          MGR  CC +  L+KG W+PEED+KL++YI KHGHG W  +PKLA
Sbjct: 1  MGRSPCCDENGLKKGPWTPEEDQKLIDYIHKHGHGSWRALPKLA 44

[Close]

BLAST of Cp4.1LG11g08530 vs. ExPASy Swiss-Prot
Match: P20027 (Myb-related protein Hv33 OS=Hordeum vulgare OX=4513 GN=MYB2 PE=2 SV=3)

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-10
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1  MGRHS--CCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLAA 46
          MGR S     + K+RKGLWSPEEDEKL N+I +HG GCWS+VP+LAA
Sbjct: 1  MGRPSSGAVGQPKVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAA 47

[Close]

BLAST of Cp4.1LG11g08530 vs. NCBI nr
Match: XP_023545320.1 (transcription factor MYB86-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219 bits (558), Expect = 6.95e-70
Identity = 123/234 (52.56%), Postives = 123/234 (52.56%), Query Frame = 0


Query: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA---------------- 60
           MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA                
Sbjct: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLAGLQRCGKSCRLRWINY 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  LRPDLKRGPFSQQEEDLIVELHSVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLKQKG 120

Query: 121 -----------------------------------ASPIQSPDMSTTTFEAFSNLFSPSL 123
                                              ASPIQSPDMSTTTFEAFSNLFSPSL
Sbjct: 121 IDPNTHKPYLDQETNNNGKNNSLIITSNDQKSHEKASPIQSPDMSTTTFEAFSNLFSPSL 180

[Close]

BLAST of Cp4.1LG11g08530 vs. NCBI nr
Match: AXF54210.1 (MYB3 [Cucurbita pepo])

HSP 1 Score: 219 bits (558), Expect = 6.95e-70
Identity = 123/234 (52.56%), Postives = 123/234 (52.56%), Query Frame = 0


Query: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA---------------- 60
           MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA                
Sbjct: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLAGLQRCGKSCRLRWINY 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  LRPDLKRGPFSQQEEDLIVELHSVIGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLKQKG 120

Query: 121 -----------------------------------ASPIQSPDMSTTTFEAFSNLFSPSL 123
                                              ASPIQSPDMSTTTFEAFSNLFSPSL
Sbjct: 121 IDPNTHKPYLDQETNNNGKNNSLIITSNDQKSHEKASPIQSPDMSTTTFEAFSNLFSPSL 180

[Close]

BLAST of Cp4.1LG11g08530 vs. NCBI nr
Match: XP_022999757.1 (transcription factor MYB86-like [Cucurbita maxima])

HSP 1 Score: 213 bits (542), Expect = 1.87e-67
Identity = 119/233 (51.07%), Postives = 122/233 (52.36%), Query Frame = 0


Query: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA---------------- 60
           MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA                
Sbjct: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLAGLQRCGKSCRLRWINY 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  LRPNLKRGPFSQQEEDLIVELHSILGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLKQKG 120

Query: 121 -----------------------------------ASPIQSPDMSTTTFEAFSNLFSPSL 122
                                              ASPIQSPDMSTTTFEAFSNLFSP+L
Sbjct: 121 IDPNTHKPYLDEETNNNGKNNSLIITSNDQKSHEKASPIQSPDMSTTTFEAFSNLFSPAL 180

[Close]

BLAST of Cp4.1LG11g08530 vs. NCBI nr
Match: XP_022946690.1 (transcription factor MYB86-like [Cucurbita moschata])

HSP 1 Score: 209 bits (531), Expect = 8.52e-66
Identity = 120/233 (51.50%), Postives = 121/233 (51.93%), Query Frame = 0


Query: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA---------------- 60
           MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA                
Sbjct: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLAGLQRCGKSCRLRWINY 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  LRPDLKRGPFSQQEEDLIIELHSVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLKQKG 120

Query: 121 -----------------------------------ASPIQSPDMSTTTFEAFSNLFSPSL 122
                                              ASPIQSPDMSTTTFEAFSNLFSPSL
Sbjct: 121 IDPNTHKPYLDQETNNNGKNNSLIITSNDQKSHEKASPIQSPDMSTTTFEAFSNLFSPSL 180

[Close]

BLAST of Cp4.1LG11g08530 vs. NCBI nr
Match: KAG6599159.1 (Transcription factor MYB86, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 209 bits (531), Expect = 8.52e-66
Identity = 120/233 (51.50%), Postives = 121/233 (51.93%), Query Frame = 0


Query: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA---------------- 60
           MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA                
Sbjct: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLAGLQRCGKSCRLRWINY 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  LRPDLKRGPFSQQEEDLIVELHSVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLKQKG 120

Query: 121 -----------------------------------ASPIQSPDMSTTTFEAFSNLFSPSL 122
                                              ASPIQSPDMSTTTFEAFSNLFSPSL
Sbjct: 121 IDPNTHKPYLDQQTNNNGKNNSLIITSNDQKSHEKASPIQSPDMSTTTFEAFSNLFSPSL 180

[Close]

BLAST of Cp4.1LG11g08530 vs. ExPASy TrEMBL
Match: A0A345BTF3 (MYB3 OS=Cucurbita pepo OX=3663 PE=2 SV=1)

HSP 1 Score: 219 bits (558), Expect = 3.36e-70
Identity = 123/234 (52.56%), Postives = 123/234 (52.56%), Query Frame = 0


Query: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA---------------- 60
           MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA                
Sbjct: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLAGLQRCGKSCRLRWINY 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  LRPDLKRGPFSQQEEDLIVELHSVIGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLKQKG 120

Query: 121 -----------------------------------ASPIQSPDMSTTTFEAFSNLFSPSL 123
                                              ASPIQSPDMSTTTFEAFSNLFSPSL
Sbjct: 121 IDPNTHKPYLDQETNNNGKNNSLIITSNDQKSHEKASPIQSPDMSTTTFEAFSNLFSPSL 180

[Close]

BLAST of Cp4.1LG11g08530 vs. ExPASy TrEMBL
Match: A0A6J1KBP4 (transcription factor MYB86-like OS=Cucurbita maxima OX=3661 GN=LOC111494011 PE=4 SV=1)

HSP 1 Score: 213 bits (542), Expect = 9.08e-68
Identity = 119/233 (51.07%), Postives = 122/233 (52.36%), Query Frame = 0


Query: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA---------------- 60
           MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA                
Sbjct: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLAGLQRCGKSCRLRWINY 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  LRPNLKRGPFSQQEEDLIVELHSILGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLKQKG 120

Query: 121 -----------------------------------ASPIQSPDMSTTTFEAFSNLFSPSL 122
                                              ASPIQSPDMSTTTFEAFSNLFSP+L
Sbjct: 121 IDPNTHKPYLDEETNNNGKNNSLIITSNDQKSHEKASPIQSPDMSTTTFEAFSNLFSPAL 180

[Close]

BLAST of Cp4.1LG11g08530 vs. ExPASy TrEMBL
Match: A0A6J1G4M4 (transcription factor MYB86-like OS=Cucurbita moschata OX=3662 GN=LOC111450683 PE=4 SV=1)

HSP 1 Score: 209 bits (531), Expect = 4.12e-66
Identity = 120/233 (51.50%), Postives = 121/233 (51.93%), Query Frame = 0


Query: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA---------------- 60
           MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA                
Sbjct: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLAGLQRCGKSCRLRWINY 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  LRPDLKRGPFSQQEEDLIIELHSVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLKQKG 120

Query: 121 -----------------------------------ASPIQSPDMSTTTFEAFSNLFSPSL 122
                                              ASPIQSPDMSTTTFEAFSNLFSPSL
Sbjct: 121 IDPNTHKPYLDQETNNNGKNNSLIITSNDQKSHEKASPIQSPDMSTTTFEAFSNLFSPSL 180

[Close]

BLAST of Cp4.1LG11g08530 vs. ExPASy TrEMBL
Match: A0A6J1FHH0 (transcription factor MYB86-like OS=Cucurbita moschata OX=3662 GN=LOC111444189 PE=4 SV=1)

HSP 1 Score: 114 bits (284), Expect = 1.64e-28
Identity = 89/261 (34.10%), Postives = 95/261 (36.40%), Query Frame = 0


Query: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA---------------- 60
           MGRHSCC+KQKLRKGLWSPEEDEKLLN+ITKHGHGCWS+VPKLA                
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  LKPDLKRGPFSQQEEDLIIELHSVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLKQKG 120

[Close]

BLAST of Cp4.1LG11g08530 vs. ExPASy TrEMBL
Match: A0A6J1HWT6 (transcription factor MYB86-like OS=Cucurbita maxima OX=3661 GN=LOC111468595 PE=4 SV=1)

HSP 1 Score: 111 bits (277), Expect = 1.70e-27
Identity = 87/259 (33.59%), Postives = 94/259 (36.29%), Query Frame = 0


Query: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA---------------- 60
           MGR+SCC+KQKLRKGLWSPEEDEKLLN+ITKHGHGCWS+VPKLA                
Sbjct: 1   MGRYSCCYKQKLRKGLWSPEEDEKLLNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  LKPDLKRGPFSQPEEDLIIELHSVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLKQKG 120

[Close]

BLAST of Cp4.1LG11g08530 vs. TAIR 10
Match: AT5G26660.1 (myb domain protein 86 )

HSP 1 Score: 101.7 bits (252), Expect = 4.4e-22
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 1  MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA 45
          MGRHSCCFKQKLRKGLWSPEEDEKLLNYIT+HGHGCWS+VPKLA
Sbjct: 1  MGRHSCCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLA 44

[Close]

BLAST of Cp4.1LG11g08530 vs. TAIR 10
Match: AT1G57560.1 (myb domain protein 50 )

HSP 1 Score: 98.6 bits (244), Expect = 3.7e-21
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 0


Query: 1  MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA 45
          M RHSCC+KQKLRKGLWSPEEDEKLLNYITKHGHGCWS+VPKLA
Sbjct: 1  MKRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLA 44

[Close]

BLAST of Cp4.1LG11g08530 vs. TAIR 10
Match: AT4G01680.2 (myb domain protein 55 )

HSP 1 Score: 95.1 bits (235), Expect = 4.1e-20
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1  MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLAAS 47
          MGRHSCC+KQKLRKGLWSPEEDEKLL YITK+GHGCWS+VPK A +
Sbjct: 1  MGRHSCCYKQKLRKGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGT 46

[Close]

BLAST of Cp4.1LG11g08530 vs. TAIR 10
Match: AT4G01680.1 (myb domain protein 55 )

HSP 1 Score: 94.7 bits (234), Expect = 5.4e-20
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1  MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA 45
          MGRHSCC+KQKLRKGLWSPEEDEKLL YITK+GHGCWS+VPK A
Sbjct: 1  MGRHSCCYKQKLRKGLWSPEEDEKLLRYITKYGHGCWSSVPKQA 44

[Close]

BLAST of Cp4.1LG11g08530 vs. TAIR 10
Match: AT4G01680.3 (myb domain protein 55 )

HSP 1 Score: 94.7 bits (234), Expect = 5.4e-20
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1  MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSTVPKLA 45
          MGRHSCC+KQKLRKGLWSPEEDEKLL YITK+GHGCWS+VPK A
Sbjct: 1  MGRHSCCYKQKLRKGLWSPEEDEKLLRYITKYGHGCWSSVPKQA 44

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g08530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LPH6	6.2e-21	95.45	Transcription factor MYB86 OS=Arabidopsis thaliana OX=3702 GN=MYB86 PE=2 SV=1	[more]
Q8VZQ2	9.9e-19	56.63	Transcription factor MYB61 OS=Arabidopsis thaliana OX=3702 GN=MYB61 PE=2 SV=1	[more]
Q9SPG3	7.8e-16	71.74	Transcription factor MYB26 OS=Arabidopsis thaliana OX=3702 GN=MYB26 PE=2 SV=1	[more]
Q9S9Z2	4.4e-11	61.36	Transcription factor MYB93 OS=Arabidopsis thaliana OX=3702 GN=MYB93 PE=1 SV=1	[more]
P20027	1.7e-10	65.96	Myb-related protein Hv33 OS=Hordeum vulgare OX=4513 GN=MYB2 PE=2 SV=3	[more]

BLAST of Cp4.1LG11g08530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545320.1	6.95e-70	52.56	transcription factor MYB86-like [Cucurbita pepo subsp. pepo]	[more]
AXF54210.1	6.95e-70	52.56	MYB3 [Cucurbita pepo]	[more]
XP_022999757.1	1.87e-67	51.07	transcription factor MYB86-like [Cucurbita maxima]	[more]
XP_022946690.1	8.52e-66	51.50	transcription factor MYB86-like [Cucurbita moschata]	[more]
KAG6599159.1	8.52e-66	51.50	Transcription factor MYB86, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cp4.1LG11g08530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A345BTF3	3.36e-70	52.56	MYB3 OS=Cucurbita pepo OX=3663 PE=2 SV=1	[more]
A0A6J1KBP4	9.08e-68	51.07	transcription factor MYB86-like OS=Cucurbita maxima OX=3661 GN=LOC111494011 PE=4...	[more]
A0A6J1G4M4	4.12e-66	51.50	transcription factor MYB86-like OS=Cucurbita moschata OX=3662 GN=LOC111450683 PE...	[more]
A0A6J1FHH0	1.64e-28	34.10	transcription factor MYB86-like OS=Cucurbita moschata OX=3662 GN=LOC111444189 PE...	[more]
A0A6J1HWT6	1.70e-27	33.59	transcription factor MYB86-like OS=Cucurbita maxima OX=3661 GN=LOC111468595 PE=4...	[more]

BLAST of Cp4.1LG11g08530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26660.1	4.4e-22	95.45	myb domain protein 86	[more]
AT1G57560.1	3.7e-21	93.18	myb domain protein 50	[more]
AT4G01680.2	4.1e-20	84.78	myb domain protein 55	[more]
AT4G01680.1	5.4e-20	88.64	myb domain protein 55	[more]
AT4G01680.3	5.4e-20	88.64	myb domain protein 55	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..43 e-value: 1.7E-7 score: 31.4
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 9..43 score: 12.682259
None	No IPR available	GENE3D	1.10.10.60		coord: 11..73 e-value: 2.0E-10 score: 42.5
None	No IPR available	PANTHER	PTHR47997:SF41	HOMEODOMAIN-RELATED	coord: 1..44
None	No IPR available	PANTHER	PTHR47997	MYB DOMAIN PROTEIN 55	coord: 1..44
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 9..52 score: 7.084971
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 17..42 e-value: 7.88852E-7 score: 41.0218
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 8..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g08530.1	Cp4.1LG11g08530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding