Cp4.1LG11g08380 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g08380
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	DNA-directed RNA polymerase
Location	Cp4.1LG11: 6763574 .. 6779361 (-)
RNA-Seq Expression	Cp4.1LG11g08380
Synteny	Cp4.1LG11g08380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTTCCTCAATGCCGTAATTTTATCTTCTTCACAATAATGACAGCGGCAGCAGCCTCCTTCTTCCCAGCTCTTCAAGCTCCGATTCATGGCGGCAATGCATGGAGGAAACCCGCCACGAGATGCAAGTGCGATAGAAAAACCTACTCAACCTTCAACTCTCTCTCTAATTCCCTTCGTTCTTCTGTTTCTTTCCCCATAAACTTCGATTCCTCCGCCCAGCCACTTCGTCTTCAACCTTTACCTGATTCAGTTCAGGAAAATTTCACGGAAACCCTCGATGGTTCCATGAATTTGCAGGTACCAATGAGCGGAATTCACCATGTTACTCACGGGGAACCTTGCCAAAGAATCTTCATCCGGGATCCGCCGTGGATAGGTTCCTTGTTCCTGAAGGGGCTTTATAAAAGCGTCGAGAAGGAAGTGAAGTTAGAATTTAAAGAAATTGGGAAGAGGAAGTATAATTTGCTGAGGAGGCGGCAGATTAAGGCGGAGACTGAGGCCTGGGAGAAGATGGCTGAGGAATACAAGGAGTTAGAGCGAGAAATGTGCGAGAAAAAATTAGCTCCGAATTTGCCTTATGTGAAGACGTTGTTTTTGGGTTGGTTTGAGCCATTGAAACAGGCTATAGAGAAGGAGCAAAAAAAGCAGCAGACTAAGAAGCAGAAGGCGGCATTCGCGCCTCATATAGAGTTGTTATCTGCAGATAAGATGGCGGTTATAGTGATGTACAAGATGATGGGATTGTTGATGGTGGCGCAGCAGGATGGCTGTGTTCAGGTCGTTCAGGCTGCGGTTCAGATCGGCGGTGCTATAGAGCAGGAGGTGAGCATTGAAGATCTTGTGCTTTCTTTTAAGATGATTTTTCCAATTGAGCAATTACACCTAGAACTTATTAACTTGCTATAATGAAACACTATTGTTAGAGTCTGTTTGTGAAAAAAGTGCTCATGTATCAGCCCAAGCCCCACCTTGTTCTCTTTGGGCTTTCCCTTTTGAGCTTTCCCTCAAGGTTTTAAAATGCGTTTACTAGCTGTGAGTTTGGGCTGTTACAAATGGTATTAGAGCCAGACACCGGACAGTGTAGAGGACGATGGGCTCCAAGGGGGTGGATTGTGAGATCCCACATCAGTTGAAGAGGGGAACAAAACATTCCTTATAAGGGTGTGGAAATCTCTCCCTAGTAGACGTGTTTTAAAACCTTGAGGGGAATCTCGAAAGGGAAAACCCAAAGAGGACAATATCTGTTAGCAATGGGCTTGGGCTGTTACCGCTCAACTCATTTGGGACAACTCTAAACTATGTTCTTGCCAAGCACATTGTTACAGAGCTGTTTTGCCTAGTTATTCACCGTGCCATCTACGAGCAGATTGCAGATGTATTCAACCAAAGTATTGTACTGAAGTCCCTGGATATTGATATAGGTTGAATTTAATTGCATGCCAAATGATAGATTTTATTTTTCTCTAATTTGACCATCATTTATTTCAAAAGGAATCTAATGGCGATTTAATATGCTTCGGAACGAGAGTTTTTTGAGTTTACATCACTGTAATTTCACTTTTGTTTTAACGAGTTCTCTAGCAAAATTGTTGCTATTTTCTCAGTACTTTCTAAGCCATCATCATTAAATTATTGTGCAAAGGGCTTGACTCTTCCTATCAAATTTACCCCAGGTTCGAATTCAGAGCCTTCTGGAGAAGGCTAGGAGTAATCAAAGAACAAAGGTTCCAGGGGATGCTCAGTGTTTGAGCAAGGAGAAAGAGGTACTGAGGAAACGAGTTAATGGTCTAATTAGGAGAAGGAGACTAAAAGAGGTGCAAAAGTTGTTGAAGAAAGAAGAATTTAAGGCTTGGGGTCGAGACACCCAGGCTAAGGTTTGTTGCTTCCATCTATTTTCTTATATGTTTCGATATAATCAATTCAAGACCATATTTAAAGGCAGTTATCTACCTGATCAAACTTTGCAGCTAGGAAGTTGTCTGATACAATTGTTAATTGAATCAGCTTTCGTCCAACCTCCAGTTAGCCAGTCACCTGACAGTCCACCTGATATTCGACCTGCATTTTGGCATAGTTTTAAACCTGTTGCGAAAACTCCAGGGTGAGATTTATTTTTCCTGTCCATTTTCTATTTCTTGTAGATTGACAGCCAAGGCACCAAGTTAGGGTCCATTTAACCAACCTCCACAGATTTGGTCATTAGATTATGCTCATGAGGTATTGCTTTAAAGCAATGAGTCGGGGGTATTTGGTGCTGGTGCTTGTCATCCTTCTTTGGGTTTTCTTTTCCTATTCCCCCTTTTTGGAGTCAGTGAGCTGCATGGATGGTTGATGATTGGATTTTAATTCTCAAGTGGAAGAGAAGGCTGCTGCTTGGCAGGATCAAGTAGCCAACTCTTTGCATCGTAGCTTTTTCTGGAACAGCTTATCATGCTTCTGCATTTTTTGGTGATTGTAGGCAGAAACTTGTGAAGAAATATGGAGTTATTGAATGTGATCCCATAGTTCTCGCTGGGCTTGACAGAACTGTAAGTTTTTTTTTGTTTTCTTCTCTCTCTCTCTCTCCCCCTGCCCTTTTTCTTACTAACTTATAATGGCAGATGTCCTCCGAATCATGTTATGTTTTTCGTTGTAGCTACTTAGAGATATTAAGCTTGGAAAATTAAAAGAATAAAGTCACACAAATATGCTTAAATGATTTATCATTTTTTGCTTCGTACATACTTGTGGTCTCGCGGGCTTGATGAAGTCAATTTTTTCATTGGATTTCAGAAAAACTGACAAACTTTTACAACCCATTGCTATTGGCACTAATGGTACAATATCGAAAAATTCATTTCACTAAAATGATGGTTAATTAATGTCCAACAACCAAAATATATGCCAGTTATTGCTTAACAGCTAATATATGACTTGGGCAGTAGAGAAGTTAGCCCTGCCCTTGACTATATCACTGCAATAAATTGATTATAATGTCACATTTTGACAATTATTTGAAGTGGTATTATTGCTTCTTTTGCATAAAGAATTCCCCTCTGCATAGCAAACTCTTCTTTATGTTGATAAAACTTACATGTGGTTTTATTCGGTACTGCTATTGAGTGCTGGTGCAGTGCTCTATTTATTGGACTGTATGAATTTGTGTATTAAATGGAAAATTTTCTGCTCCATGAATTTTCTCTTCTAAACTATTACTTTGTCTTCAATTCCATGCAGGCTAAGCAGATGTTAATTCCTTACATTCCTATGTTGGTTCCTCCTAAAAAATGGAAAGGGTATGAAGCAAATTGAATAAATGCACTTTATATTGTATATTCCCTTTAGGGTATCTGCCGTGGTTACTGCATCAAAAGATGCTTTAAATCTGGCTACTAAGTGATCCCCGAGTGCTTTAAGGCAGCTGTAGTCTGTATCATATCTCATATTAGCTACTAATCATAAATATCTCATGTAAATACTTACAGATATGATAAAGGTGGACACTTATTCTTACCTTCATATGTCATGCGTACTCATGGCTCAAGTAGGCAACAAGAAGCCATGAAGAACATTTCTGGGAAACAGATGCAGAAAGTATTTGAGGTTTGTTTGGAAAGCTCGAAGTCTCCTTTTCAGCAAACTTGGTCGCAAATTTGACTTCCCCCCCCCCCCCCCCCCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTTTTTTTTTTTTTTTTTTTGACATTTGTGAGTGCTCAAATCAAACTTACAATCCCAAGGGAGAACAAGAGATTTGTCTGACCTTACCACATATTGTTCGCATGGAATTTGTAGGATTTTGATATCTCAGATGGGCTGCCACTATGAAGTTAAAAGTCATTCACCCAAAGTCCCTATAGCTTGAAACTTCAATATTATTTTTATATTGTCTGAGCTATAAATTTATTTGGCAGTTTAACATGCAACAAGTGCCTGCAATGATATAATTACCTTAGTTATGGTTCTTTTAGAGCATGGGGCCATTTAATAATATGTGAGGAAGTATACTAAGTCCTTTCCTTATGGAAGTACATTGGTAATCTGAATTTGGCCAGACACTTTAGCAGTTTTTATATGAAATATGACAATCTTGTAAATTTTCAATGGCTTATGATTTTTTGTGCTTCTATCATGCATGTAGTTGAGTTAATCTGATATTGTGCTGAAATGGGTTGCTTACAGGCTCTGGATATGCTAGGGAGCACCAAATGGAGGGTGAATAGAAGGGTGCTCAGCGTGGTGGAGAGTATTTGGGCTCAAGGTGGCAATGCAGCAGGCCTGGTTGATCGCAAAGATGTAAATTCATGATACTGCCAAAGCAATTCCAACAATTATTGTTTCTTGTGAACATGTGTTCTCCTTTTGAAATCTCATATTGGATAATAGGGTATCAGTAACAATATAGTTTAGCTTATTGCCAACTTGGATTTATGTTCATGTGAGCCCTTGCTTCCTCTTTCCATATTCTCTTTGCCTAGGTATGGTTATGCTTGCTAGATTATCAATATCATACATAAAATAAAAATGTTATGTAACTTGAATTTCTGATAAGAAAATAGGTCCTTTTATGATAAAATTTCTTGTTTGTATGATAACTGGCTATTAATAGGACAAGGATTCACATGATTTTCTGGTCGCATGCTTATTATGTGGTTGATTTACTCTTCCTTCGTTGGCAAGTAGGTTCCTATTCCAGAGAAGCCTCTTGGGGATTTGACAAAATGGAAACAGAGCATGTGGAAGGCAAAGAAAATCAACCAAGAGTTGCATTCCCAACGATGTGATGTTGAACTTAAGCTTTCGGTAAGATTTATTTTCTAAAGTTGGAATGAGGATAACTTTCCTTAAGTTGGGAAATGTAATATGCTGCCTAGCCTGTTGACTGGACATGAGGTCTGATTAAACGTGCTAAACTGGTTATGCCTTTCCCCCAATAAATATTAGTACAGATGTCCTTATAAAAGAAGATCAGTTTTTTTTTTTTTTTGGTCAGAATTTTATGACACTTTAATCAAATATTAATCCCAATAGCCCTTTTAAGTACGTCGATTGATAAATTTGAAGGCCGTACCAACCATGGTACCGAAATCTGATTAGTGATTTCCATCCAGTTCCATCTTAATTTTTTTTTAGAATAAATGAGTATCATATGTAAATGATTATACTTTCAATTGTGGACATAATTAGTTATTGAGTTATTTTCCTTGAGTTAGGTTGCTCGCAAAATGAAGGACGAGGAAGGCTTTTATTACCCGCATAATCTTGATTTTCGTGGCCGAGCATACCCAATGCATCCACATCTGAATCATTTGAGTTCTGATCTTTGTCGAGGAGTTCTTGAGTTTGCTGAGGGACGACCTCTAGGAAAGTCTGGTTTATACTGGCTGAAGATACATTTAGCCAATTTATATGCTGGTGGTGTCGAAAAACTTTCCTATGACAGACGTCTAGCATTTGTGGATGACCATTTGGATAGCATATTTGATTCTGCAAGTAACCCAGTTCATGGAGATCGTTGGTGGTTAGCTGCTGAAGATCCTTTCCAGTGCTTGGCTGCTTGTATCAATCTATCCGAAGCCCTAAGAAGCTCATCACCACACACTGTCATTTCCCATCTGCCAATCCATCAGGTAGGTCTCAATCAACACTTGGAAGTAATAGCATAAGAACCATCTTTCTTAGGTACAAGAATAACTGGAACAGAANATGTCCATGCATAATTAATTTGGTAAGGTTGTGTCTAAAGATTCTGTTGGATAATTTCTTATCCTTGTGTTAGAAACGTTCTTTTTCCATCATTCCTCTCGAAGGTAAGCATATTCCAGTACAAGAGTTTCTTTCCACCTCAGATCTCCCTGGCCTGCCAATTTTCATCATGGAAAATTGTCTATATTTTGTATCTTTTGGGATGAGCTTACTTCTTTAGTTTCTCATATTGCAACTTCAAATGAATTTAATGTTTGTTTTTCTTTTTTGTTTCATGTTTTGATTAGATTTACTATCTCCTCCTTTTCACAGTTTTTCGTGATTATTTACTGTCTTTACATGAACTTAACATCTCTTATCTTTTGTATATTGTACAACATCTGTTTATTTATTTGAGCCATGTAATGACAGCTTAAAAGTAATGATTTTTCAGGATGGTTCGTGCAATGGCTTACAGCACTATGCAGCTTTGGGAAGAGACACTGTAAGGCCCAATAATCTCTATTTGTGTCGCATGAAAATCCTTTCCTTATATTCCTTCCTTGTTTTATGATTTGTCTTAAAAAAATAAACTTATCGTTAGTAATTCCTCAACTTCTTTCGTAGTCATCAAATAATATGTTTAGGGATGATGAGTTATAATGTAACAATGCTAATATCTCCCCTTGGGCTTCAAAGTTTATTCTTTTCTTGTGCACCAATAATTTTGTTCTTTTTCAGGATTTTCGTCCTCTTTCTTTTTCTTGTTAATGTCTATTGTTATTGTTATTATTATTATTATTATTTATAGGAAACAATAACCATTCATTGGTATGATGAAATGGGATACAAAATGGTCCTATCAATAGAACAATTTACAAAAAGCACCTCCATTGATTAGTGAGGGCGGTAAGGCTATATTTACAAAAGGTGGAAACAATATGCTTCAGTTGATAGCTTACAGAGATGTAGCTTCTATAAAATAGCCTATGTCACAGTCCTTGTCCAAAAAGATATGAGCATCGCGATCCAACCAAATGTTAGAAAAAAAGGCACGAATGTGTTTGATCCCAAAGGATCCCTTTGTCCTTTTTAAAAGGGTGCCCCAAGAAAGTAAGAGAGAAAAGCTGAACCAAAAACATCTGGAAGCTGATTTCAGTATTTTGATGCAAAGATACAATGGCTGAAGAGGTGAATCAAGTTTCTTCACTTTTAAAACTGAAAAAACCGCAGCTCAGAGCTAAACATAACCATGGAGATCTCCGTTGAAGCTTGTCAAAAGTTTTGATGCAACAATGACTGAGCTCCCATATAAAAAATTCACTTTTTTGGGAGAAGTATTTTGGTGGCTGAATCGATGTATTGTCCATAGGCATCCCCAATTTTCTTGAAGGAATCATAAGTTTTTATCCATCCCCCATACGAAGGCACAAAGGACTCCATACTCCAATTTGATCTCACCTTTAAGTTCCCACTTTATACCACTTCTTTGTGCAACAAAGTAGTCCTCTGTTCTTGTCTTCCACTTTGAGGAGGCCCTATCAGGTTGAATGGGGCTAATAGACTTAAAATCAGATACTTCTTGTTGAAGAGCTCATAAAATCTCATACCAGTCATCATGAAAGTGTTCTCGAAAGATAATAACAGAGGAGTCTCTTCTATTGATTGGGCATGGGGATGACAGTTTCCATGGTTGTATTTCATGGGGAGTCTCTTCTATTGAATGTTTTCCCTTTATGGCTTCCTTGTAGGTGGTTTTTTTCTTTTTCTTTTTTGTTGATTGGTGGAGGGGGGTTTCTGAGCTCATTAAGAGGAGAGAGAAAACATTTCCAACCAGATTTATTCTACCCATTGACTCCCAATTTTGCAATTTCAGCACAATGCCCTTTTTTGTTTGAAATCTTTTCTACACATAACACATATTCAGCATTCAAGTATTCTTTGAAGAATTTTTGGTTCAGGTCAGAAAAACATGAGAAGAGCCATGGTTGAGATTAGGTAAAGGACTGGTCTCTACTTGTTTTAGTGATTTGCAACCCTCTTCCACCTTCAATAGAGAAAGTCTTGTGGTCAATGGAGAAGGTAATGGGTGGGTTGTGTGGTTGGTGACTAGGAGTTGGAGCCATCATCGGTGGTTCAAGCACACCGATGAGTTAGGCAGCAGGCATGCATGGGCCTGGCAGTGGGGAGGTGATATGAACCAAGGCATCAATCGTGTAAGATAAACTTCAAGGAAGATGTGGAAAAAAATGTCTGTTCAAATTATCACAAGATGTTGCTATTCATGTCATGCCACATTAAGGAAGAATCAAGCATCATTATTCTTGGATGGTTACAAATTTTGGGTAGATGATCATCTAGAGTTATGGTGTTTCCTTAATGTATTTTACGACTTTTATTTACTTTAAGGTTACATTTACATAGTGGCTAATTATGGTCAGAAAGTATGAAGGTTGCAACTCTTAAAATGCCTCGGAAGGTCAAGGGTTTTTGTTTTGAGGCTATAAAGCCATGTATGTTACTTTTGTAAAGGAGACTTGAAAATGAAGTAAAAAGAGCATTTGTGCTTTCTTTTAGCTAAGGGCTAAGTTTCTTTGGAATTCTATGTAGTTTAGATTGCATGTTTAGAATCATTCAAGCTTGACGTGATCGATCTTGCTTGGAGAGTGATTCGAATCTCAAACAAGTGTTCTTACCTTGGGATATTTGATTAACAAGGTAATCCGAATTTTACATTCCCTTGGAGTGATTCCTTATCATTAGGGCTAAGTGTCTTTGCAATTCTATGTAGTTTAGGTTGCATGTTTAGAATTATTCAAGTTTGACATGATCGATCTTGTTTATGGAGTGATTCGAATCTCAAACAAGTGTTCTTGCGTTGAGATATTTGATCAACAAGGAAATCCGAATTTTACTTTCCCTTATAGTGATTCCTTATCAGGAGGGGTGGGGCTGGGTTCGTTAATGTTTTACTTTATAGTTTATGAAAATTTAGGACCCGAGTTGCAATAAATGCTCCTTCTTTCATTAATACCTGCGTGTATGATATATAGCTGGAGTCTCTTATTATCAATTTCACATGTGGTGTACTTGCTGAAGTTGAAATTTTTTTATATTCTAAAAGAGTATTTTTTATGGATCCAGTTCGAAGCAGCTGCTGTTAACTTAGTTGCTGGAGATAAACCTGCTGATGTTTACTCGGAAATTGCTGCCAGGTATGTTCAAAGTCTTCAATCCAAGTACAACTTAGTCATCACTGGTTGCAGTTAACTATAGTTTTAAGTTAAAGCAACCGTCATGGTCAATCTCTGTAATTTTTTTCTTGTTTCCTGTAAAATAAATTCCTGTTGCTCATTGGTCATCATTTCAAACAAGAAGCAAAGGTGTTGTAGTAGTATTCTGCCATGTTGTGGTAATATTCTACCAGAGGTAGAAGTCAGAAAATTTCACGATTCTTCTAGAAAGGAAGAAGAAATTTGAGAGACCCTTCATTGTATGACTTCCTGTTGGGGTTTTTAGTAAAAGTTCTTCTATATCTATTGTTCCTCTTTGGTAAACACTAATTGGATGATTTTTTTGTCTCTATGACTTGTTTGGTTGATTATTTTTAGTCACCCTTTTTCAAACTTATTCTGGCGGTCTAAAGAATTTTTAAAGACATTTAAGAGTTTAGAGGAATTATGGGATTTAGTTAGATTCCTAGCGTTGAGCCAGTATAGACTCTGATCATTTTAGTAGTTTCAACTCCCTTTCAATATTAGTCAAGTGGGGAGTGCCCCTGTATAACTTCCTTAGTTGGGAGATTGTTTATCCTCTTTATATAGCTTTCTTGATGATATTCAGTTTCTGACGAGGAAAAAAAAAGAAGGTTAGCAACCTTTTATGTGTGTGCGAGGATTGAAATTGTATGGAATAAAAAAAAAAAACTTAAGCTTTCCACTTTGTTGTAGGCTAGCGACTATACGCTAGTTACAACCACTGAGTCTCTTCTGACCCACTTCACTACAGACTTGTACACATTCAAAATTTATCTGCCTATCCATACACGATCATATTCTGGTGAAAATATTAGATTTAATACCTCTTGAGGGCTTCCGGTTTTATTTTTTATTTTTTATTTTTGTTTTTGTTTAGTAACAACACATTGTAAACGATCCCACNGTTGGACTCTTTGTTGGGTTATTTTTTTGTATGCCCTTGTATTTTCTTTCATGCTTCTCACTAAAAGCTTGGTTCCTTATATATATATATATATATTGGTGAAAATGTATCTCTCCTTTTTATCACTTTTGTTTTACTTCTATTATTGGTCAACAGGGTTCACAATATCATGATCAGGGATGGTAACCAGGATCCAACGACAAATCCAAATGCTTTACTGGCTAAGATCCTAATTGATCAGGTTTGTTTTGCTTGGCTTAGCCACCAAGCTAGTTCAGTTTCCTCTTAAAAGGAGGATATTTTCCAAAGATGTTGATTCTTAAAAAATTTCTTGTTGAACTAGTTTATCTTTTTGAGGCTTTCAGGTTGATCGCAAACTGGTGAAACAGACAGTGATGACTTCTGTATATGGTGTCACGTTTGTTGGAGCTCGTGAACAAATTAAAAAAAGACTTGGGGAGAAGGGCCTCATTTCTGATGACAGACTGCTATTTCAAGCAGCCTGTTATGCTGCTAAAGTAAGTAATTACTAATTATGGGCTCGGATTATATTCTTTTTGGAGAAATCATTATTATTACTTTGAATTTCTTTCATGTGTTAGCAGAATATAAGACTTAATTTGGTTGCTCGTAATATTGACAACCTTTACTTTTTTGTGGTGTCCCTAGCTTACAAGAGTTTGAATACTTGACCTAGGCTATAGAGGATATATCTCCACATATTACTGTCTCCTCAAAATTTTCCTTAAAATGTAATTTATGAGAGCTCCTTACCATTGCTCATCCATTAACATTTGCCTCTCCTTGCTGGTCTGATTACTATCTGGGAAGTTTTGCTTTCCCCTTTCTGTTGGAGTCCTTATGCACATCTCCCCAAGATCCTCTGTCTAGTGGTTTTGTGGTAAAGTGATAATTACATGAAGGAATGTGAGTCAGTGCTAAGGATTTGTCTTATTTGNAATTACATGAAGGAATGTGAGTCAGTGCTAAGGATTTGTCTTATTTGGTTGGAGAGAAATAGCAGAATATTTCAAGATCAGTTTAGAGCTAACGGAGTTTATGTTTTTGCGCATATGTATATTTGTAGCGCACTGCCTCCACTTGGAGCGTATTACATGGAGAATTTTGTACTTTCCCTCTTTATTTTATTAACATTTTGATTTTTTTTTTCTTTAATGCCCTGTGGGTAGGTTGAGGCTGGTAGACGTTTTATCCCCCATGTCCTTACTTTTCTACCTCTTCTTTAGTAAAAGGGAATGGTTCGTTTCCTTTTTCAAAATGTTGACCATGTTTAATATTGTTGTACCGTTTCCTACAGGTGACATTGGCTGCACTTGGGGAGATATTTGGAGCTGCACGTGGGATAATGAGTTGGCTTGGTGATTGTGCTAAGGTATGCGCCATTCTGACATGTTCTCGGCAGTAGGTTACTTGCTATCTATATAAAATGGCATACTTTGGACATTCTTTTTAACTGTCGTTGTAAGTTCTAATTGTTAAATATGTCACACTTGCAGGTCATTGCTGCAGATAATCAGCCTGTGCGTTGGACCACTCCTCTTGGTCTCCCTGTTGTACAACCTTACTATAGAAGTGAACGGCATCTTGTGAGTAACTTCTTTATGGAATCTTTTTCCAGAAACCAAATCAACTTTTTATTTTCAGAAAAGTAGATAAGAGGTGGGAGCACCTTCACCTTATACGAACCCACTTCAGTTAATAATAGTAAAAAAAAAAAGAAAAAAGGAAAGAAAATAACCGCAATTATATAAAATGAGAACAAAGGTACACCAAGAAGAACCCGAAAACTTAACACCGCCCCGAATACCACCCAGCTCTTACTAATCCCTTTAATAGAAATTATTTTCTCTGCAACCAACTTTTTCGAAGTCGTGTTCACTGCACATGACCTCAATACCTTACTTTCTCTTTAAAAGGAGTATCACATAGGATATGCTAGATATTTGCTTGAGTGGGCACCCCAACTTAAACCAAACTCTAAAGAAATCTTATTCCAACAACTACAGGTTTATTTACAGCTGAATAACAGGTGATTCACACTGTAATGGACTCCTGGCATAAGTCACTCCCTTTGCTTCAAGATGGGTATGGTGTGATATTCCGGAGAGATTCATTTTGTATTTAGGGATAGTCAGGATGGATGGCATAAGATGGTTTGCTGAGAATTCTAATTCTATTACCTCTAGTGTTTTGTCTCCAAGTGTGGAGTTCTAGTGGGGAACTTTATCAGGTACAAGGCGGGAATAGGGGATATAATTTTATTTTTGGTAGGACTTGCGTTGACCAGCCTCTCGAGTTTGCCTACCTTAGGCTTTCCAACATTACGTGTGAGATTCCACATAGGTTGGGGAGGAGAATGAAGCATTCTTTATAAGAGTGTGGAAACCTCTCCCTAGCAGACACTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGAACTGTTACAAATGGTACCAGGGCCAAACATCGGGCAATGTGCTAGTGAGGAGGCTGAGCCCCAAAAGGGAGTGGATAAGAGGCAGTGTGCTAGCAAGAACGTAGGGCCCCAAAGAGGGTGGATTGGGGGTCAAGGGAACGAGTGTCTTCGAGGACGTTGGGCCACGAAGGGGGGTGGATTGTGAGATCCCACATCGATTGGGGAGGAGAACGAAACATGCTTTATAAGGGTGTGGAAACCTCTCCCTAGCATACTTATTTTAAAAACCTTGAGGGGAAGCCCGAAAGAGAAAACCCAAATAGGACAATATCTGCTCGTAGTGAGCTTCAGCTGTTACATTATGGTTGTCTAGAAATTGTTGAATCTCTTAACAGTGGTGCTCCCCAATCCCCGGAGCTTGTAGCGGTTCATGCAAAGTGGTTAGAATATCTTTAAAGCCGGTACATAAGGCAACTGCATTCCAGAAGGCACCATTTTCATTACATGATTGATTAAGATTTAAATCAAATGCCTGTTATTTCTGCCTTTTAATCCTTCACTTTTGAGTGGAAGCTCCTGGAAAGTTAGCATTGTTGGCCCTCTTATGTCTCCAGCTATAGCGTACAGAACTCTGGCGTAATGGGTACAGGCGATTTTATAGCATTGCATTGGTGATGCATGGTTGGGAGGATAATAGTTTTTAGTTCCTTAGCATTTGAATTCAATTTTTTGTGCTCTGTACATGAATATATTAATAGCTGTGGTCGAGAATTAGCGACAATCTAACTGCAAGCATCCTCGTTAATAAATGACTCATATGGCTCATTAAAGGAAGACACGGTATGACAGTACTCAGTCTTATCTTTGTTCTGCAGGTTAGGACATCTCTTCAAGTTTTGGCTTTACAACGAGAGGGTAACTCGGTAAGCTTCTGTCACTGGTCTCGAATCATATGATATTCTCCAGATGTTCATTGAGCTTATTTGATTGTTACATTATTTCCAGGTGGATGTTAGAAAGCAGAGAACTGCATTTCCTCCTAATTTTGTACACTCACTGGATGGTTCACATATGATGCTCACTGCCCTTGCCTGTAGGGATGCCGGCTTACGTTTTGCAGGTTAGTTTTTCCAGTTTATACAAAGCTTTGACCGTTGAATAAATCTTCGTTCCGGGGAAAGAAAGTTGTCAATGATTTAAGGGAATAACTTGAAGATACGACTAGCATAAACTTGATGGATTAAGGCATTAGCTCTATCATTTAGGAGAAATTTTACTAGACTTTCATTTATTATTGTTATTATTTTTGGATTATTAATCTATTGAACATTCAAGGGCACTATCCCAAAACCCCTCTAAAAATTATATATTGTTCCTTTCACTCAAAATACTCACAAAATAGCATAAAGACAAAAGCAAAATAAAGCCTGCTACCCTTTTAACAGAGGGAATGGAAAGAAACTCCTGCATGGACCTGTTGTTGACCTTATTGAATTATCTCTCAAACAGTTTATCTATCAATAAGTTATTTGATGTCAGATATATAGCATATCCAGTAAGGAAAATGAGAAGTAAAACAAACAAGGAGCACATGGTCTTGAGAATTGTTGGGAGAGGAGTCCCACATCGGCTAATTAAGTGGTTGATCATGATTTTATAAGGAACACTATCTCCATTGGTATGAGGCCTTTTGGGGAGAAACCAAAAGCAAAGCCACGAGAGCTTATGCTCACAATGGATAATATCGTACCATTGTGGAGGGGCCGTGATTCCTAACATGTGCAACAGAGTAAATTATTATTTTATGTAAATGCTAATTCAACTATTTCGTTCTTCTAAATGNATAATATCGTACCATTGTGGAGGGTCCGTGATTCCTAACATGTGCAACAGAGTAAATTATTATTTTTATGTAAATGCTAATTCAACTATTTCGTTCTTCTAAATGATTTTCAAGAACAATTTCTTTCAAGAATTTAATCTGTTGATGTGCTCTCACCTGCCCAAGTAATTTTGTTACAGGGGTGCATGACTCCTTCTGGACACATGCCTGTGATGTGGACCAAATGAATCTGATACTCAGAGAAAAATTTGTGGAGCTTTATAGTATGCCAGTTCTTGATACTGTAAGTATGCTGTTATTAAGTTTATAGTATGCTGTATTTAACAATTGTTTGGTTTTTGAGAATTGTGCTTCGATTTTCATTTTTTCTAAGGAAACATTTGAAAACGAAGAAACATATCGGAAGAAATGGTGTTTATAAACTCTACTTTTTTCTTTAAAAAAAAAATCAAATGCTTATCAAACGGGTCTAAGAGTTTATTTACATTTAAGGTGTTCNCTCAGAAACATATCGGAAGAAATGGTGTTTACAAACTCTACTTTTTTCTTTAAAAAAAAATCAAATGGTTATCAAACGGGTCTAAGAGTTTATTTACATTTAAGGTGTTCGAACTTTTCGTGTTTTCAGTCCCCATACTACCGAAACTTATATTTTGACCTCTGTCGTCGAGTATTCCCCCAACTATAGACTTGCATTAGACCTATTCTGCAGATATTTTTCAGCTGTAGTTTACACTTGTTTCGATTTTTGTACCTTTCCCTTGTTGAATTTGGAGCTATTTTGCTTTCTTGCCAGTTGCTTGAAGGATTTGAAACAACATATCCAGGATTAACGTTCCCTCCCCTCCCCGAGAGAGGCGATTTTGACTTACGAGGGGTTCTTAAATCTCCGTACTTCTTCAACTGATTCGTCTCGGCCCAAACTGCAGCCATGACATTCTGCAGAAATCAGGCTTAGTGAAAACTTGTACAGGCAGCAATTTTGAAAAGTAGATGTATAAAGTTGACACAAGAAAGCAAGAGTGAGGGAAGCCCAGAGCCGCTTCTGTTCTCAGGGAAATGAACGTTTTCTCGGGTCGTCTTTCTCGCAGATCTTAATGGATACTCGTGCTAACAACAAGCTTACAGCCAGTTCATCTGAGATCGAGACTCGAGCAGCCATTTTTCGTCTGGCTTCCGACTTCGAGAGTTCATTTTCGTGCTGCAGATGAGTATTCTTTACCCCATATCTTCTGTATAAGCTCTTATTTGTATGAATTAGGAAAGAAAAAAATAAGTTATCAGAAGCCTTCATTTTCAATTAGGAAGGAAGGAATGTAAGTTATTGAGAAGCCTTCATTTTGTGTGTGTATAGGTTCCCTGGTAGTCACTTTTGTACTATATTCTTCCCCTACAAGATTATATATTCTTTATTTGGATTAAATTTAGCTGTT

mRNA sequence

TCTCTTCCTCAATGCCGTAATTTTATCTTCTTCACAATAATGACAGCGGCAGCAGCCTCCTTCTTCCCAGCTCTTCAAGCTCCGATTCATGGCGGCAATGCATGGAGGAAACCCGCCACGAGATGCAAGTGCGATAGAAAAACCTACTCAACCTTCAACTCTCTCTCTAATTCCCTTCGTTCTTCTGTTTCTTTCCCCATAAACTTCGATTCCTCCGCCCAGCCACTTCGTCTTCAACCTTTACCTGATTCAGTTCAGGAAAATTTCACGGAAACCCTCGATGGTTCCATGAATTTGCAGGTACCAATGAGCGGAATTCACCATGTTACTCACGGGGAACCTTGCCAAAGAATCTTCATCCGGGATCCGCCGTGGATAGGTTCCTTGTTCCTGAAGGGGCTTTATAAAAGCGTCGAGAAGGAAGTGAAGTTAGAATTTAAAGAAATTGGGAAGAGGAAGTATAATTTGCTGAGGAGGCGGCAGATTAAGGCGGAGACTGAGGCCTGGGAGAAGATGGCTGAGGAATACAAGGAGTTAGAGCGAGAAATGTGCGAGAAAAAATTAGCTCCGAATTTGCCTTATGTGAAGACGTTGTTTTTGGGTTGGTTTGAGCCATTGAAACAGGCTATAGAGAAGGAGCAAAAAAAGCAGCAGACTAAGAAGCAGAAGGCGGCATTCGCGCCTCATATAGAGTTGTTATCTGCAGATAAGATGGCGGTTATAGTGATGTACAAGATGATGGGATTGTTGATGGTGGCGCAGCAGGATGGCTGTGTTCAGGTCGTTCAGGCTGCGGTTCAGATCGGCGGTGCTATAGAGCAGGAGGTTCGAATTCAGAGCCTTCTGGAGAAGGCTAGGAGTAATCAAAGAACAAAGGTTCCAGGGGATGCTCAGTGTTTGAGCAAGGAGAAAGAGGTACTGAGGAAACGAGTTAATGGTCTAATTAGGAGAAGGAGACTAAAAGAGGTGCAAAAGTTGTTGAAGAAAGAAGAATTTAAGGCTTGGGGTCGAGACACCCAGGCTAAGCTAGGAAGTTGTCTGATACAATTGTTAATTGAATCAGCTTTCGTCCAACCTCCAGTTAGCCAGTCACCTGACAGTCCACCTGATATTCGACCTGCATTTTGGCATAGTTTTAAACCTGTTGCGAAAACTCCAGGGCAGAAACTTGTGAAGAAATATGGAGTTATTGAATGTGATCCCATAGTTCTCGCTGGGCTTGACAGAACTGCTAAGCAGATGTTAATTCCTTACATTCCTATGTTGGTTCCTCCTAAAAAATGGAAAGGATATGATAAAGGTGGACACTTATTCTTACCTTCATATGTCATGCGTACTCATGGCTCAAGTAGGCAACAAGAAGCCATGAAGAACATTTCTGGGAAACAGATGCAGAAAGTATTTGAGGCTCTGGATATGCTAGGGAGCACCAAATGGAGGGTGAATAGAAGGGTGCTCAGCGTGGTGGAGAGTATTTGGGCTCAAGGTGGCAATGCAGCAGGCCTGGTTGATCGCAAAGATGTTCCTATTCCAGAGAAGCCTCTTGGGGATTTGACAAAATGGAAACAGAGCATGTGGAAGGCAAAGAAAATCAACCAAGAGTTGCATTCCCAACGATGTGATGTTGAACTTAAGCTTTCGGTTGCTCGCAAAATGAAGGACGAGGAAGGCTTTTATTACCCGCATAATCTTGATTTTCGTGGCCGAGCATACCCAATGCATCCACATCTGAATCATTTGAGTTCTGATCTTTGTCGAGGAGTTCTTGAGTTTGCTGAGGGACGACCTCTAGGAAAGTCTGGTTTATACTGGCTGAAGATACATTTAGCCAATTTATATGCTGGTGGTGTCGAAAAACTTTCCTATGACAGACGTCTAGCATTTGTGGATGACCATTTGGATAGCATATTTGATTCTGCAAGTAACCCAGTTCATGGAGATCGTTGGTGGTTAGCTGCTGAAGATCCTTTCCAGTGCTTGGCTGCTTGTATCAATCTATCCGAAGCCCTAAGAAGCTCATCACCACACACTGATGGTTCGTGCAATGGCTTACAGCACTATGCAGCTTTGGGAAGAGACACTTTCGAAGCAGCTGCTGTTAACTTAGTTGCTGGAGATAAACCTGCTGATGTTTACTCGGAAATTGCTGCCAGGGTTCACAATATCATGATCAGGGATGGTAACCAGGATCCAACGACAAATCCAAATGCTTTACTGGCTAAGATCCTAATTGATCAGGTTGATCGCAAACTGGTGAAACAGACAGTGATGACTTCTGTATATGGTGTCACGTTTGTTGGAGCTCGTGAACAAATTAAAAAAAGACTTGGGGAGAAGGGCCTCATTTCTGATGACAGACTGCTATTTCAAGCAGCCTGTTATGCTGCTAAAGTGACATTGGCTGCACTTGGGGAGATATTTGGAGCTGCACGTGGGATAATGAGTTGGCTTGGTGATTGTGCTAAGGTCATTGCTGCAGATAATCAGCCTGTGCGTTGGACCACTCCTCTTGGTCTCCCTGTTGTACAACCTTACTATAGAAGTGAACGGCATCTTGTTAGGACATCTCTTCAAGTTTTGGCTTTACAACGAGAGGGTAACTCGGTGGATGTTAGAAAGCAGAGAACTGCATTTCCTCCTAATTTTGTACACTCACTGGATGGTTCACATATGATGCTCACTGCCCTTGCCTGTAGGGATGCCGGCTTACGTTTTGCAGGGGTGCATGACTCCTTCTGGACACATGCCTGTGATGTGGACCAAATGAATCTGATACTCAGAGAAAAATTTGTGGAGCTTTATAGTATGCCATTGCTTGAAGGATTTGAAACAACATATCCAGGATTAACGTTCCCTCCCCTCCCCGAGAGAGGCGATTTTGACTTACGAGGGGTTCTTAAATCTCCGTACTTCTTCAACTGATTCGTCTCGGCCCAAACTGCAGCCATGACATTCTGCAGAAATCAGGCTTAGTGAAAACTTGTACAGGCAGCAATTTTGAAAAGTAGATGTATAAAGTTGACACAAGAAAGCAAGAGTGAGGGAAGCCCAGAGCCGCTTCTGTTCTCAGGGAAATGAACGTTTTCTCGGGTCGTCTTTCTCGCAGATCTTAATGGATACTCGTGCTAACAACAAGCTTACAGCCAGTTCATCTGAGATCGAGACTCGAGCAGCCATTTTTCGTCTGGCTTCCGACTTCGAGAGTTCATTTTCGTGCTGCAGATGAGTATTCTTTACCCCATATCTTCTGTATAAGCTCTTATTTGTATGAATTAGGAAAGAAAAAAATAAGTTATCAGAAGCCTTCATTTTCAATTAGGAAGGAAGGAATGTAAGTTATTGAGAAGCCTTCATTTTGTGTGTGTATAGGTTCCCTGGTAGTCACTTTTGTACTATATTCTTCCCCTACAAGATTATATATTCTTTATTTGGATTAAATTTAGCTGTT

Coding sequence (CDS)

ATGACAGCGGCAGCAGCCTCCTTCTTCCCAGCTCTTCAAGCTCCGATTCATGGCGGCAATGCATGGAGGAAACCCGCCACGAGATGCAAGTGCGATAGAAAAACCTACTCAACCTTCAACTCTCTCTCTAATTCCCTTCGTTCTTCTGTTTCTTTCCCCATAAACTTCGATTCCTCCGCCCAGCCACTTCGTCTTCAACCTTTACCTGATTCAGTTCAGGAAAATTTCACGGAAACCCTCGATGGTTCCATGAATTTGCAGGTACCAATGAGCGGAATTCACCATGTTACTCACGGGGAACCTTGCCAAAGAATCTTCATCCGGGATCCGCCGTGGATAGGTTCCTTGTTCCTGAAGGGGCTTTATAAAAGCGTCGAGAAGGAAGTGAAGTTAGAATTTAAAGAAATTGGGAAGAGGAAGTATAATTTGCTGAGGAGGCGGCAGATTAAGGCGGAGACTGAGGCCTGGGAGAAGATGGCTGAGGAATACAAGGAGTTAGAGCGAGAAATGTGCGAGAAAAAATTAGCTCCGAATTTGCCTTATGTGAAGACGTTGTTTTTGGGTTGGTTTGAGCCATTGAAACAGGCTATAGAGAAGGAGCAAAAAAAGCAGCAGACTAAGAAGCAGAAGGCGGCATTCGCGCCTCATATAGAGTTGTTATCTGCAGATAAGATGGCGGTTATAGTGATGTACAAGATGATGGGATTGTTGATGGTGGCGCAGCAGGATGGCTGTGTTCAGGTCGTTCAGGCTGCGGTTCAGATCGGCGGTGCTATAGAGCAGGAGGTTCGAATTCAGAGCCTTCTGGAGAAGGCTAGGAGTAATCAAAGAACAAAGGTTCCAGGGGATGCTCAGTGTTTGAGCAAGGAGAAAGAGGTACTGAGGAAACGAGTTAATGGTCTAATTAGGAGAAGGAGACTAAAAGAGGTGCAAAAGTTGTTGAAGAAAGAAGAATTTAAGGCTTGGGGTCGAGACACCCAGGCTAAGCTAGGAAGTTGTCTGATACAATTGTTAATTGAATCAGCTTTCGTCCAACCTCCAGTTAGCCAGTCACCTGACAGTCCACCTGATATTCGACCTGCATTTTGGCATAGTTTTAAACCTGTTGCGAAAACTCCAGGGCAGAAACTTGTGAAGAAATATGGAGTTATTGAATGTGATCCCATAGTTCTCGCTGGGCTTGACAGAACTGCTAAGCAGATGTTAATTCCTTACATTCCTATGTTGGTTCCTCCTAAAAAATGGAAAGGATATGATAAAGGTGGACACTTATTCTTACCTTCATATGTCATGCGTACTCATGGCTCAAGTAGGCAACAAGAAGCCATGAAGAACATTTCTGGGAAACAGATGCAGAAAGTATTTGAGGCTCTGGATATGCTAGGGAGCACCAAATGGAGGGTGAATAGAAGGGTGCTCAGCGTGGTGGAGAGTATTTGGGCTCAAGGTGGCAATGCAGCAGGCCTGGTTGATCGCAAAGATGTTCCTATTCCAGAGAAGCCTCTTGGGGATTTGACAAAATGGAAACAGAGCATGTGGAAGGCAAAGAAAATCAACCAAGAGTTGCATTCCCAACGATGTGATGTTGAACTTAAGCTTTCGGTTGCTCGCAAAATGAAGGACGAGGAAGGCTTTTATTACCCGCATAATCTTGATTTTCGTGGCCGAGCATACCCAATGCATCCACATCTGAATCATTTGAGTTCTGATCTTTGTCGAGGAGTTCTTGAGTTTGCTGAGGGACGACCTCTAGGAAAGTCTGGTTTATACTGGCTGAAGATACATTTAGCCAATTTATATGCTGGTGGTGTCGAAAAACTTTCCTATGACAGACGTCTAGCATTTGTGGATGACCATTTGGATAGCATATTTGATTCTGCAAGTAACCCAGTTCATGGAGATCGTTGGTGGTTAGCTGCTGAAGATCCTTTCCAGTGCTTGGCTGCTTGTATCAATCTATCCGAAGCCCTAAGAAGCTCATCACCACACACTGATGGTTCGTGCAATGGCTTACAGCACTATGCAGCTTTGGGAAGAGACACTTTCGAAGCAGCTGCTGTTAACTTAGTTGCTGGAGATAAACCTGCTGATGTTTACTCGGAAATTGCTGCCAGGGTTCACAATATCATGATCAGGGATGGTAACCAGGATCCAACGACAAATCCAAATGCTTTACTGGCTAAGATCCTAATTGATCAGGTTGATCGCAAACTGGTGAAACAGACAGTGATGACTTCTGTATATGGTGTCACGTTTGTTGGAGCTCGTGAACAAATTAAAAAAAGACTTGGGGAGAAGGGCCTCATTTCTGATGACAGACTGCTATTTCAAGCAGCCTGTTATGCTGCTAAAGTGACATTGGCTGCACTTGGGGAGATATTTGGAGCTGCACGTGGGATAATGAGTTGGCTTGGTGATTGTGCTAAGGTCATTGCTGCAGATAATCAGCCTGTGCGTTGGACCACTCCTCTTGGTCTCCCTGTTGTACAACCTTACTATAGAAGTGAACGGCATCTTGTTAGGACATCTCTTCAAGTTTTGGCTTTACAACGAGAGGGTAACTCGGTGGATGTTAGAAAGCAGAGAACTGCATTTCCTCCTAATTTTGTACACTCACTGGATGGTTCACATATGATGCTCACTGCCCTTGCCTGTAGGGATGCCGGCTTACGTTTTGCAGGGGTGCATGACTCCTTCTGGACACATGCCTGTGATGTGGACCAAATGAATCTGATACTCAGAGAAAAATTTGTGGAGCTTTATAGTATGCCATTGCTTGAAGGATTTGAAACAACATATCCAGGATTAACGTTCCCTCCCCTCCCCGAGAGAGGCGATTTTGACTTACGAGGGGTTCTTAAATCTCCGTACTTCTTCAACTGA

Protein sequence

MTAAAASFFPALQAPIHGGNAWRKPATRCKCDRKTYSTFNSLSNSLRSSVSFPINFDSSAQPLRLQPLPDSVQENFTETLDGSMNLQVPMSGIHHVTHGEPCQRIFIRDPPWIGSLFLKGLYKSVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLPYVKTLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVAQQDGCVQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNGLIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRPAFWHSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSSRQQEAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESIWAQGGNAAGLVDRKDVPIPEKPLGDLTKWKQSMWKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLYWLKIHLANLYAGGVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSSSPHTDGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMIRDGNQDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISDDRLLFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQPYYRSERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDQMNLILREKFVELYSMPLLEGFETTYPGLTFPPLPERGDFDLRGVLKSPYFFN

Homology

[Close]

BLAST of Cp4.1LG11g08380 vs. ExPASy Swiss-Prot
Match: P69243 (DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPOT3-SYL PE=3 SV=1)

HSP 1 Score: 1324.7 bits (3427), Expect = 0.0e+00
Identity = 671/947 (70.86%), Postives = 792/947 (83.63%), Query Frame = 0


Query: 41  SLSNSLRSSVSFPINFDSSAQPLRLQPLPDSVQENFT------ETLDGSMNLQVPMSGIH 100
           S S+SL +S SFP    +   P+   P+ +++Q   T      E L+  +NLQ   +G  
Sbjct: 38  SQSSSLPTS-SFP---KTLKLPVIQMPINNNIQSQTTVCVSTDENLEELVNLQKIANG-- 97

Query: 101 HVTHGEPCQRIFIRDPPWIGSLFLKGLYKSVE--KEVKLEFKEI-GKRKYNLLRRRQIKA 160
            V   E  +R+FI+DPPW+ SLF+  L+   +  + V+ EF+EI  +R+Y +LRRRQIKA
Sbjct: 98  -VLTKESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKA 157

Query: 161 ETEAWEKMAEEYKELEREMCEKKLAPNLPYVKTLFLGWFEPLKQAIEKEQKKQQTKKQKA 220
           ETEAWE+M EEY+ELEREMCEKKLAPNLPYVK L LGWFEPL+QAIEKEQ  + T K +A
Sbjct: 158 ETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRA 217

Query: 221 AFAPHIELLSADKMAVIVMYKMMGLLMV-AQQDGCVQVVQAAVQIGGAIEQEVRIQSLLE 280
           AFAPHI+ L ADKMAVIVM+K+MGLLM+  +++ CVQVVQAAVQIG A+E EVRI + LE
Sbjct: 218 AFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLE 277

Query: 281 KARSNQRTKVPGDAQ-CLSKEKEVLRKRVNGLIRRRRLKEVQKLLKKEEFKAWGRDTQAK 340
           K +  Q+      +Q  +S+E  +LRKRV  LI+R R+ EV+KL+K EE ++WGRDTQAK
Sbjct: 278 KTKKLQKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAK 337

Query: 341 LGSCLIQLLIESAFVQPPVSQSPDSPPDIRPAFWHSFKPVAKTPGQKLVKKYGVIECDPI 400
           LG  L++LL E+A+VQPPV QS D+PPDIRPAF H F+   + PG+ +VKKYGVIECDP+
Sbjct: 338 LGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIECDPL 397

Query: 401 VLAGLDRTAKQMLIPYIPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSSRQQEAMKNISGK 460
           V+AG+DRT KQM+IPY+PMLVPPKKW+GYDKGG+LFLPSY+MRTHGS RQQ+A++++  K
Sbjct: 398 VVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTK 457

Query: 461 QMQKVFEALDMLGSTKWRVNRRVLSVVESIWAQGGNAAGLVDRKDVPIPEKPLGDL---T 520
           QMQ+V+EALD LGSTKWRVN+R+LSVVESIWA GGN AGLVDRKDVPIPE    D+    
Sbjct: 458 QMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHSDDIMEVK 517

Query: 521 KWKQSMWKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNH 580
           KWK  + K+KKINQELHSQRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNH
Sbjct: 518 KWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNH 577

Query: 581 LSSDLCRGVLEFAEGRPLGKSGLYWLKIHLANLYAGGVEKLSYDRRLAFVDDHLDSIFDS 640
           LSSDLCRG+LEFAEGRPLGKSGL WLKIHLA+LYAGG+EKL YD RLAFV++H+D I DS
Sbjct: 578 LSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDS 637

Query: 641 ASNPVHGDRWWLAAEDPFQCLAACINLSEALRSSSPHT---------DGSCNGLQHYAAL 700
           A+NP++G+RWWL AEDPFQCLAACINLSEAL+SSSPHT         DGSCNGLQHYAAL
Sbjct: 638 ANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAAL 697

Query: 701 GRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMIRDGNQDPTTNPNALLAKILIDQVDRK 760
           GRD+ EAAAVNLVAGDKPADVY+EIA RV +I+  D  +DP T+PNALLAK+LIDQVDRK
Sbjct: 698 GRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRK 757

Query: 761 LVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISDDRLLFQAACYAAKVTLAALGEIFGAA 820
           LVKQTVMTSVYGVT+VGAREQIK+RL EKGLI DDRLLF A+CYAAKVTLAALGE+F AA
Sbjct: 758 LVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAA 817

Query: 821 RGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQPYYRSERHLVRTSLQVLALQREGNSVD 880
           RG M+WLGDCAKVIA++NQPVRWTTPLGLPVVQPY++++RH++RTSLQVLALQREG++V+
Sbjct: 818 RGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVE 877

Query: 881 VRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDQMNLILREKF 940
           VRKQRTAFPPNFVHSLDGSHMM+TA+ACRDAGL+FAGVHDSFWTHACDVDQMN ILREKF
Sbjct: 878 VRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKF 937

Query: 941 VELYSMP----LLEGFETTYPGLTFPPLPERGDFDLRGVLKSPYFFN 961
           VELYSMP    LLE F+ +YP LTFPPLP+RGDFDL  VL+SPYFFN
Sbjct: 938 VELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEVLESPYFFN 977

[Close]

BLAST of Cp4.1LG11g08380 vs. ExPASy Swiss-Prot
Match: P69242 (DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=RPOT3 PE=2 SV=1)

HSP 1 Score: 1324.7 bits (3427), Expect = 0.0e+00
Identity = 671/947 (70.86%), Postives = 792/947 (83.63%), Query Frame = 0


Query: 41  SLSNSLRSSVSFPINFDSSAQPLRLQPLPDSVQENFT------ETLDGSMNLQVPMSGIH 100
           S S+SL +S SFP    +   P+   P+ +++Q   T      E L+  +NLQ   +G  
Sbjct: 38  SQSSSLPTS-SFP---KTLKLPVIQMPINNNIQSQTTVCVSTDENLEELVNLQKIANG-- 97

Query: 101 HVTHGEPCQRIFIRDPPWIGSLFLKGLYKSVE--KEVKLEFKEI-GKRKYNLLRRRQIKA 160
            V   E  +R+FI+DPPW+ SLF+  L+   +  + V+ EF+EI  +R+Y +LRRRQIKA
Sbjct: 98  -VLTKESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKA 157

Query: 161 ETEAWEKMAEEYKELEREMCEKKLAPNLPYVKTLFLGWFEPLKQAIEKEQKKQQTKKQKA 220
           ETEAWE+M EEY+ELEREMCEKKLAPNLPYVK L LGWFEPL+QAIEKEQ  + T K +A
Sbjct: 158 ETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRA 217

Query: 221 AFAPHIELLSADKMAVIVMYKMMGLLMV-AQQDGCVQVVQAAVQIGGAIEQEVRIQSLLE 280
           AFAPHI+ L ADKMAVIVM+K+MGLLM+  +++ CVQVVQAAVQIG A+E EVRI + LE
Sbjct: 218 AFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLE 277

Query: 281 KARSNQRTKVPGDAQ-CLSKEKEVLRKRVNGLIRRRRLKEVQKLLKKEEFKAWGRDTQAK 340
           K +  Q+      +Q  +S+E  +LRKRV  LI+R R+ EV+KL+K EE ++WGRDTQAK
Sbjct: 278 KTKKLQKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAK 337

Query: 341 LGSCLIQLLIESAFVQPPVSQSPDSPPDIRPAFWHSFKPVAKTPGQKLVKKYGVIECDPI 400
           LG  L++LL E+A+VQPPV QS D+PPDIRPAF H F+   + PG+ +VKKYGVIECDP+
Sbjct: 338 LGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIECDPL 397

Query: 401 VLAGLDRTAKQMLIPYIPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSSRQQEAMKNISGK 460
           V+AG+DRT KQM+IPY+PMLVPPKKW+GYDKGG+LFLPSY+MRTHGS RQQ+A++++  K
Sbjct: 398 VVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTK 457

Query: 461 QMQKVFEALDMLGSTKWRVNRRVLSVVESIWAQGGNAAGLVDRKDVPIPEKPLGDL---T 520
           QMQ+V+EALD LGSTKWRVN+R+LSVVESIWA GGN AGLVDRKDVPIPE    D+    
Sbjct: 458 QMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHSDDIMEVK 517

Query: 521 KWKQSMWKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNH 580
           KWK  + K+KKINQELHSQRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNH
Sbjct: 518 KWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNH 577

Query: 581 LSSDLCRGVLEFAEGRPLGKSGLYWLKIHLANLYAGGVEKLSYDRRLAFVDDHLDSIFDS 640
           LSSDLCRG+LEFAEGRPLGKSGL WLKIHLA+LYAGG+EKL YD RLAFV++H+D I DS
Sbjct: 578 LSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDS 637

Query: 641 ASNPVHGDRWWLAAEDPFQCLAACINLSEALRSSSPHT---------DGSCNGLQHYAAL 700
           A+NP++G+RWWL AEDPFQCLAACINLSEAL+SSSPHT         DGSCNGLQHYAAL
Sbjct: 638 ANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAAL 697

Query: 701 GRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMIRDGNQDPTTNPNALLAKILIDQVDRK 760
           GRD+ EAAAVNLVAGDKPADVY+EIA RV +I+  D  +DP T+PNALLAK+LIDQVDRK
Sbjct: 698 GRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRK 757

Query: 761 LVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISDDRLLFQAACYAAKVTLAALGEIFGAA 820
           LVKQTVMTSVYGVT+VGAREQIK+RL EKGLI DDRLLF A+CYAAKVTLAALGE+F AA
Sbjct: 758 LVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAA 817

Query: 821 RGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQPYYRSERHLVRTSLQVLALQREGNSVD 880
           RG M+WLGDCAKVIA++NQPVRWTTPLGLPVVQPY++++RH++RTSLQVLALQREG++V+
Sbjct: 818 RGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVE 877

Query: 881 VRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDQMNLILREKF 940
           VRKQRTAFPPNFVHSLDGSHMM+TA+ACRDAGL+FAGVHDSFWTHACDVDQMN ILREKF
Sbjct: 878 VRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKF 937

Query: 941 VELYSMP----LLEGFETTYPGLTFPPLPERGDFDLRGVLKSPYFFN 961
           VELYSMP    LLE F+ +YP LTFPPLP+RGDFDL  VL+SPYFFN
Sbjct: 938 VELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEVLESPYFFN 977

[Close]

BLAST of Cp4.1LG11g08380 vs. ExPASy Swiss-Prot
Match: Q8L6J1 (DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPOT3-TOM PE=2 SV=2)

HSP 1 Score: 1310.4 bits (3390), Expect = 0.0e+00
Identity = 664/944 (70.34%), Postives = 784/944 (83.05%), Query Frame = 0


Query: 41  SLSNSLRSSVSFP--INFDSSAQPLRLQPLPDSVQENFTETLDGSMNLQVPMSGIHHVTH 100
           S S+SL +S SFP  +       P+       +V  +  E L+  +NLQ   +G     +
Sbjct: 38  SQSSSLSTS-SFPKTLKLPVIHMPINNIQSQTTVCVSTDENLEELVNLQKIPNGF---LN 97

Query: 101 GEPCQRIFIRDPPWIGSLFLKGLYKSVE--KEVKLEFKEI-GKRKYNLLRRRQIKAETEA 160
            E  +R+FI+DPPW+ SLF+  L+   +  + V+ EF+EI  +R+Y +LRRRQIKAETEA
Sbjct: 98  KESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEA 157

Query: 161 WEKMAEEYKELEREMCEKKLAPNLPYVKTLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAP 220
           WE+M EEY+ELEREMCEKKLAPNLPYVK L LGWFEPL+QAIEKEQ  + T K +AAFAP
Sbjct: 158 WEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAP 217

Query: 221 HIELLSADKMAVIVMYKMMGLLMV-AQQDGCVQVVQAAVQIGGAIEQEVRIQSLLEKARS 280
           HI+ L ADKMAVIVM+K+MGLLM+  +++ CVQVVQAAVQIG A+E EVRI + LEK + 
Sbjct: 218 HIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKK 277

Query: 281 NQRTKVPGDAQ-CLSKEKEVLRKRVNGLIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSC 340
            Q+      +Q  +SKE  +LRKRV  LI+R R+ EV+KL+K EE ++WGRDTQAKLG  
Sbjct: 278 LQKHMTGAQSQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCR 337

Query: 341 LIQLLIESAFVQPPVSQSPDSPPDIRPAFWHSFKPVAKTPGQKLVKKYGVIECDPIVLAG 400
           L++LL E+A+VQ PV QS D+PPDIRPAF H FK   + PG+ +VKKYGVIECDP+V+AG
Sbjct: 338 LLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGKNIVKKYGVIECDPLVVAG 397

Query: 401 LDRTAKQMLIPYIPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSSRQQEAMKNISGKQMQK 460
           +DRT KQM+IPY+PMLVPPKKW+GYDKGG+LFLPSY+MRTHGS RQQ+A++ +  KQMQ+
Sbjct: 398 VDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQ 457

Query: 461 VFEALDMLGSTKWRVNRRVLSVVESIWAQGGNAAGLVDRKDVPIPEKPLGD----LTKWK 520
           V+EALD LGSTKWRVN+R+L+VVESIWA GGN AGLVDRKDVPIPE    D    + KWK
Sbjct: 458 VYEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWK 517

Query: 521 QSMWKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 580
             + K+KKINQELHSQRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSS
Sbjct: 518 WKVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 577

Query: 581 DLCRGVLEFAEGRPLGKSGLYWLKIHLANLYAGGVEKLSYDRRLAFVDDHLDSIFDSASN 640
           DLCRG+LEFAEGRPLGKSGL WLKIHLA+LYAGGVEKL YD RLAFV++H+  I DSA+N
Sbjct: 578 DLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANN 637

Query: 641 PVHGDRWWLAAEDPFQCLAACINLSEALRSSSPHT---------DGSCNGLQHYAALGRD 700
           P++G+RWWL AEDPFQCLAACINLSEAL+SSSPHT         DGSCNGLQHYAALGRD
Sbjct: 638 PLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRD 697

Query: 701 TFEAAAVNLVAGDKPADVYSEIAARVHNIMIRDGNQDPTTNPNALLAKILIDQVDRKLVK 760
           + EAAAVNLVAG+KPADVY+EIA RV +I+  D  +DP  +PNALLAK+LIDQVDRKLVK
Sbjct: 698 SMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKLVK 757

Query: 761 QTVMTSVYGVTFVGAREQIKKRLGEKGLISDDRLLFQAACYAAKVTLAALGEIFGAARGI 820
           QTVMTSVYGVT+VGAREQIK+RL EKGLI DDRLLF A+CYAAKVTLAALGE+F AARG 
Sbjct: 758 QTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGT 817

Query: 821 MSWLGDCAKVIAADNQPVRWTTPLGLPVVQPYYRSERHLVRTSLQVLALQREGNSVDVRK 880
           M+WLGDCAKVIA +NQPVRWTTPLGLPVVQPY++++RH++RTSLQ+LALQREG++V+VRK
Sbjct: 818 MTWLGDCAKVIALENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQILALQREGDAVEVRK 877

Query: 881 QRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDQMNLILREKFVEL 940
           QRTAFPPNFVHSLDGSHMM+TA+ACRDAGL+FAGVHDSFWTHACDVDQMN ILREKFVEL
Sbjct: 878 QRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVEL 937

Query: 941 YSMP----LLEGFETTYPGLTFPPLPERGDFDLRGVLKSPYFFN 961
           YS+P    LLE F+ +YP LTFPPLP+RGDF+LR VL+SPYFFN
Sbjct: 938 YSLPILEDLLENFQKSYPALTFPPLPKRGDFNLREVLESPYFFN 977

[Close]

BLAST of Cp4.1LG11g08380 vs. ExPASy Swiss-Prot
Match: O24600 (DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPOT3 PE=2 SV=1)

HSP 1 Score: 1302.0 bits (3368), Expect = 0.0e+00
Identity = 639/877 (72.86%), Postives = 747/877 (85.18%), Query Frame = 0


Query: 103 QRIFIRDPPWIGSLFLKGLYKSVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEE 162
           +R+F++DPPWI +LFLKGL K V++ +K+E K+I KRK++ LRRRQ+K ETEAWE+M +E
Sbjct: 121 RRLFMQDPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDE 180

Query: 163 YKELEREMCEKKLAPNLPYVKTLFLGWFEPLKQAIEKEQK--KQQTKKQKAAFAPHIELL 222
           Y++LE+EMCEK LAPNLPYVK +FLGWF+PLK  IE+EQK  K ++KK +AA+APHIELL
Sbjct: 181 YRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELL 240

Query: 223 SADKMAVIVMYKMMGLLMVAQQDGCVQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKV 282
            ADKMAVIVM+KMMGL+M   +DGC+QVVQAAV IG AIEQEVRI + L++ R N     
Sbjct: 241 PADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRTRKNN---- 300

Query: 283 PGDAQCLSKEKEVLRKRVNGLIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIE 342
            GD+Q   KEK++LRKRVN LIRR+R+ +  K++K E  K WGR TQAKLGS L++LLIE
Sbjct: 301 AGDSQEELKEKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIE 360

Query: 343 SAFVQPPVSQSPDSPPDIRPAFWHSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQ 402
           +A+VQPP++QS DS P+ RPAF H FK V K PG KLV++YGVIECD ++LAGLD++AK 
Sbjct: 361 AAYVQPPLTQSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKH 420

Query: 403 MLIPYIPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSSRQQEAMKNISGKQMQKVFEALDM 462
           MLIPY+PMLVPPK+WKGYDKGG+LFLPSY+MRTHGS +QQ+A+K+IS K   +VFEALD 
Sbjct: 421 MLIPYVPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDT 480

Query: 463 LGSTKWRVNRRVLSVVESIWAQGGNAAGLVDRKDVPIPEKPLG----DLTKWKQSMWKAK 522
           LG+TKWRVNR +L VVE +WA GGN AGLV+R+DVPIPEKP      +L  WK S  KA 
Sbjct: 481 LGNTKWRVNRNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKAN 540

Query: 523 KINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVL 582
           KIN+E HS RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG L
Sbjct: 541 KINRERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTL 600

Query: 583 EFAEGRPLGKSGLYWLKIHLANLYAGGVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRW 642
           EFAEGRPLGKSGL+WLKIHLANLYAGGVEKLS+D RLAFV++HLD I DSA NP+HG RW
Sbjct: 601 EFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRW 660

Query: 643 WLAAEDPFQCLAACINLSEALRSSSP---------HTDGSCNGLQHYAALGRDTFEAAAV 702
           WL AEDPFQCLAAC+ L++AL+S SP         H DGSCNGLQHYAALGRD+FEAAAV
Sbjct: 661 WLKAEDPFQCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAV 720

Query: 703 NLVAGDKPADVYSEIAARVHNIMIRDGNQDPTTNPNALLAKILIDQVDRKLVKQTVMTSV 762
           NLVAG+KPADVYSEI+ RVH IM +D ++DP +NP A LAKILI QVDRKLVKQTVMTSV
Sbjct: 721 NLVAGEKPADVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSV 780

Query: 763 YGVTFVGAREQIKKRLGEKGLISDDRLLFQAACYAAKVTLAALGEIFGAARGIMSWLGDC 822
           YGVT+VGAREQIK+RL EKG+I+D+R+LF AACY+AKVTLAALGEIF AAR IMSWLGDC
Sbjct: 781 YGVTYVGAREQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDC 840

Query: 823 AKVIAADNQPVRWTTPLGLPVVQPYYRSERHLVRTSLQVLALQREGNSVDVRKQRTAFPP 882
           AK+IA+DN PVRW TPLGLPVVQPY RSERHL+RTSLQVLALQREGN+VDVRKQRTAFPP
Sbjct: 841 AKIIASDNHPVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPP 900

Query: 883 NFVHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDQMNLILREKFVELYSMPLLE 942
           NFVHSLDG+HMM+TA+ACR+AGL FAGVHDS+WTHACDVD MN ILREKFVELY+ P+LE
Sbjct: 901 NFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELYNTPILE 960

Query: 943 ----GFETTYPGLTFPPLPERGDFDLRGVLKSPYFFN 961
                F+ +YP L FPP+P+RGDFDL+ VLKS YFFN
Sbjct: 961 DLLQSFQESYPNLVFPPVPKRGDFDLKEVLKSQYFFN 993

[Close]

BLAST of Cp4.1LG11g08380 vs. ExPASy Swiss-Prot
Match: Q8L6J3 (DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum OX=4097 GN=RPOT2-TOM PE=2 SV=2)

HSP 1 Score: 1114.4 bits (2881), Expect = 0.0e+00
Identity = 549/845 (64.97%), Postives = 678/845 (80.24%), Query Frame = 0


Query: 136  IGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLPYVKTLFLGWFEPLKQ 195
            +G RKY  L+RRQ+K ETEAWE+ A+EYKEL  +MCE+KLAPNLPYVK+LFLGWFEPL+ 
Sbjct: 178  MGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRD 237

Query: 196  AIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVAQQDGCVQVVQAAVQI 255
             I +EQ+     K KAA+A ++  L AD MAVI M+K+MGLLM     G  +VVQAA+ I
Sbjct: 238  KIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVI 297

Query: 256  GGAIEQEVRIQSLLEKARSN--QRTKVPGDAQCLSKEKEVLRKRVNGLIRRRRLKEVQKL 315
            G AIEQEVRI + LEK +    ++ K   D + +++E+E LRK+V  L+++++L+ V ++
Sbjct: 298  GDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQEQEKLRKKVTNLMKKQKLRAVGQI 357

Query: 316  LKK-EEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRPAFWHSFKPVAKT 375
            +++ ++ K WG+D +AK+GS LI+LL+++A++QPP +Q    PPDIRPAF HS + VAK 
Sbjct: 358  VRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKE 417

Query: 376  PGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPKKWKGYDKGGHLFLPSYVMR 435
              +   ++YG+I+CD +V  GL+RTA+ M+IPY+PMLVPP KW GYDKGGHL+LPSYVMR
Sbjct: 418  T-KSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMR 477

Query: 436  THGSSRQQEAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESIWAQGGNAAGLVDR 495
            THG+ +Q+EA+K  S  Q+Q VFEALD LGSTKWR+N+RVLSV++ IWA GG  A LVDR
Sbjct: 478  THGARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLADLVDR 537

Query: 496  KDVPIPEKPLGD----LTKWKQSMWKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYP 555
             D P+PE+P  +     TKW+  +   KK N+E HSQRCD+ELKL+VARKMKDEEGF+YP
Sbjct: 538  DDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEEGFFYP 597

Query: 556  HNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLYWLKIHLANLYAGGVEKLS 615
            HN+DFRGRAYPMHPHLNHL SD+CRGVL FAEGRPLG+SGL WLKIHLANL+AGGVEKLS
Sbjct: 598  HNVDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRWLKIHLANLFAGGVEKLS 657

Query: 616  YDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSSSP------ 675
             + R+AF ++H+D IFDSA  P+ G RWWL AEDPFQCLA CINLSEA+RSSSP      
Sbjct: 658  LEGRIAFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSISH 717

Query: 676  ---HTDGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMIRDGNQDPT 735
               H DGSCNGLQHYAALGRD   AAAVNLVAG+KPADVYS IAARV +IM RD  +DP 
Sbjct: 718  IPVHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDPA 777

Query: 736  TNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISDDRLLFQAA 795
              P+A+ A+ L++QVDRKLVKQTVMTSVYGVT++GAR+QIK+RL E+G I+DD  LF AA
Sbjct: 778  EFPDAVRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGAA 837

Query: 796  CYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQPYYRSERHL 855
            CYAAKVTL ALGE+F AAR IM+WLG+CAK+IA++N+PVRWTTPLGLPVVQPY +  RHL
Sbjct: 838  CYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIGRHL 897

Query: 856  VRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSF 915
            ++TSLQ+L LQ+E   V V++QRTAFPPNF+HSLDGSHMM+TA+ACR AGL FAGVHDS+
Sbjct: 898  IKTSLQILTLQQETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDSY 957

Query: 916  WTHACDVDQMNLILREKFVELYSMP----LLEGFETTYPGLTFPPLPERGDFDLRGVLKS 961
            WTHACDVD++N ILREKFVELY  P    LLE F+T+YP L FPPLPERGDFDLR VL+S
Sbjct: 958  WTHACDVDKLNRILREKFVELYETPILEKLLESFQTSYPTLLFPPLPERGDFDLRDVLES 1017

[Close]

BLAST of Cp4.1LG11g08380 vs. NCBI nr
Match: XP_023546565.1 (DNA-directed RNA polymerase 3, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1907 bits (4941), Expect = 0.0
Identity = 960/973 (98.66%), Postives = 960/973 (98.66%), Query Frame = 0


Query: 1   MTAAAASFFPALQAPIHGGNAWRKPATRCKCDRKTYSTFNSLSNSLRSSVSFPINFDSSA 60
           MTAAAASFFPALQAPIHGGNAWRKPATRCKCDRKTYSTFNSLSNSLRSSVSFPINFDSSA
Sbjct: 1   MTAAAASFFPALQAPIHGGNAWRKPATRCKCDRKTYSTFNSLSNSLRSSVSFPINFDSSA 60

Query: 61  QPLRLQPLPDSVQENFTETLDGSMNLQVPMSGIHHVTHGEPCQRIFIRDPPWIGSLFLKG 120
           QPLRLQPLPDSVQENFTETLDGSMNLQVPMSGIHHVTHGEPCQRIFIRDPPWIGSLFLKG
Sbjct: 61  QPLRLQPLPDSVQENFTETLDGSMNLQVPMSGIHHVTHGEPCQRIFIRDPPWIGSLFLKG 120

Query: 121 LYKSVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLP 180
           LYKSVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLP
Sbjct: 121 LYKSVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLP 180

Query: 181 YVKTLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVA 240
           YVKTLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVA
Sbjct: 181 YVKTLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVA 240

Query: 241 QQDGCVQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNG 300
           QQDGCVQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNG
Sbjct: 241 QQDGCVQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNG 300

Query: 301 LIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRP 360
           LIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRP
Sbjct: 301 LIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRP 360

Query: 361 AFWHSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPKKWKGYDK 420
           AFWHSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPKKWKGYDK
Sbjct: 361 AFWHSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPKKWKGYDK 420

Query: 421 GGHLFLPSYVMRTHGSSRQQEAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESIW 480
           GGHLFLPSYVMRTHGSSRQQEAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESIW
Sbjct: 421 GGHLFLPSYVMRTHGSSRQQEAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESIW 480

Query: 481 AQGGNAAGLVDRKDVPIPEKPLGDLTKWKQSMWKAKKINQELHSQRCDVELKLSVARKMK 540
           AQGGNAAGLVDRKDVPIPEKPLGDLTKWKQSMWKAKKINQELHSQRCDVELKLSVARKMK
Sbjct: 481 AQGGNAAGLVDRKDVPIPEKPLGDLTKWKQSMWKAKKINQELHSQRCDVELKLSVARKMK 540

Query: 541 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLYWLKIHLANLY 600
           DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLYWLKIHLANLY
Sbjct: 541 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLYWLKIHLANLY 600

Query: 601 AGGVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSS 660
           AGGVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSS
Sbjct: 601 AGGVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSS 660

Query: 661 SPHT---------DGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMI 720
           SPHT         DGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMI
Sbjct: 661 SPHTVISHLPIHQDGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMI 720

Query: 721 RDGNQDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISD 780
           RDGNQDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISD
Sbjct: 721 RDGNQDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISD 780

Query: 781 DRLLFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQP 840
           DRLLFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQP
Sbjct: 781 DRLLFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQP 840

Query: 841 YYRSERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLR 900
           YYRSERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLR
Sbjct: 841 YYRSERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLR 900

Query: 901 FAGVHDSFWTHACDVDQMNLILREKFVELYSMP----LLEGFETTYPGLTFPPLPERGDF 960
           FAGVHDSFWTHACDVDQMNLILREKFVELYSMP    LLEGFETTYPGLTFPPLPERGDF
Sbjct: 901 FAGVHDSFWTHACDVDQMNLILREKFVELYSMPVLDTLLEGFETTYPGLTFPPLPERGDF 960

[Close]

BLAST of Cp4.1LG11g08380 vs. NCBI nr
Match: XP_022946197.1 (DNA-directed RNA polymerase 3, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 1877 bits (4862), Expect = 0.0
Identity = 944/973 (97.02%), Postives = 954/973 (98.05%), Query Frame = 0


Query: 1   MTAAAASFFPALQAPIHGGNAWRKPATRCKCDRKTYSTFNSLSNSLRSSVSFPINFDSSA 60
           MTAAAASFFPALQAPI+GGNAWRKPATRC C+RKTYS FNSLSNSLRSSVSFPINFDSSA
Sbjct: 1   MTAAAASFFPALQAPIYGGNAWRKPATRCNCERKTYSAFNSLSNSLRSSVSFPINFDSSA 60

Query: 61  QPLRLQPLPDSVQENFTETLDGSMNLQVPMSGIHHVTHGEPCQRIFIRDPPWIGSLFLKG 120
           QPLRLQPL DSVQENFTETLDGSMNLQVPMSGIHH+T GEPCQRIFIRDPPWIGSLFLKG
Sbjct: 61  QPLRLQPLADSVQENFTETLDGSMNLQVPMSGIHHITQGEPCQRIFIRDPPWIGSLFLKG 120

Query: 121 LYKSVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLP 180
           LYKSVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLP
Sbjct: 121 LYKSVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLP 180

Query: 181 YVKTLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVA 240
           YVKTLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVA
Sbjct: 181 YVKTLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVA 240

Query: 241 QQDGCVQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNG 300
           QQDGCVQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNG
Sbjct: 241 QQDGCVQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNG 300

Query: 301 LIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRP 360
           LIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRP
Sbjct: 301 LIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRP 360

Query: 361 AFWHSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPKKWKGYDK 420
           AFWHSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPK+WKGYDK
Sbjct: 361 AFWHSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPKRWKGYDK 420

Query: 421 GGHLFLPSYVMRTHGSSRQQEAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESIW 480
           GGHLFLPSYVMRTHGSSRQQ+AMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSV+ESIW
Sbjct: 421 GGHLFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVMESIW 480

Query: 481 AQGGNAAGLVDRKDVPIPEKPLGDLTKWKQSMWKAKKINQELHSQRCDVELKLSVARKMK 540
           +QGGNAAGLVDRKDVPIPEKPLGDLTKWK+SMWKAKKINQELHSQRCDVELKLSVARKMK
Sbjct: 481 SQGGNAAGLVDRKDVPIPEKPLGDLTKWKRSMWKAKKINQELHSQRCDVELKLSVARKMK 540

Query: 541 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLYWLKIHLANLY 600
           DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGL+WLKIHLANLY
Sbjct: 541 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLY 600

Query: 601 AGGVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSS 660
           AGGVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSS
Sbjct: 601 AGGVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSS 660

Query: 661 SPHT---------DGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMI 720
           SPHT         DGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMI
Sbjct: 661 SPHTVISHLPIHQDGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMI 720

Query: 721 RDGNQDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISD 780
           RDG+QDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISD
Sbjct: 721 RDGSQDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISD 780

Query: 781 DRLLFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQP 840
           DRLLFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQP
Sbjct: 781 DRLLFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQP 840

Query: 841 YYRSERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLR 900
           YYRSERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLR
Sbjct: 841 YYRSERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLR 900

Query: 901 FAGVHDSFWTHACDVDQMNLILREKFVELYSMP----LLEGFETTYPGLTFPPLPERGDF 960
           FAGVHDSFWTHACDVDQMNLILREKFVELYSMP    LLE FETTYPGLTFPPLPERGDF
Sbjct: 901 FAGVHDSFWTHACDVDQMNLILREKFVELYSMPVLDTLLEEFETTYPGLTFPPLPERGDF 960

[Close]

BLAST of Cp4.1LG11g08380 vs. NCBI nr
Match: XP_022999624.1 (DNA-directed RNA polymerase 3, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 1866 bits (4833), Expect = 0.0
Identity = 937/970 (96.60%), Postives = 950/970 (97.94%), Query Frame = 0


Query: 4   AAASFFPALQAPIHGGNAWRKPATRCKCDRKTYSTFNSLSNSLRSSVSFPINFDSSAQPL 63
           AAASFFPALQAPI+GGNAWRKPATRCKC+RKTYST NSLSNSLRSSVSFPINFDSSAQPL
Sbjct: 3   AAASFFPALQAPIYGGNAWRKPATRCKCERKTYSTSNSLSNSLRSSVSFPINFDSSAQPL 62

Query: 64  RLQPLPDSVQENFTETLDGSMNLQVPMSGIHHVTHGEPCQRIFIRDPPWIGSLFLKGLYK 123
           RLQPL DSVQENFTETLDGSMN+QVPMSGIHH+T GEPC+RIFIRDPPWIGSLFLKGLYK
Sbjct: 63  RLQPLADSVQENFTETLDGSMNMQVPMSGIHHITQGEPCRRIFIRDPPWIGSLFLKGLYK 122

Query: 124 SVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLPYVK 183
           SVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLPYVK
Sbjct: 123 SVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLPYVK 182

Query: 184 TLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVAQQD 243
           TLFLGWFEPLKQAIEKEQKKQ+TKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVAQQD
Sbjct: 183 TLFLGWFEPLKQAIEKEQKKQRTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVAQQD 242

Query: 244 GCVQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNGLIR 303
           GCVQVVQAAVQIGGAIEQE+RIQSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNGLIR
Sbjct: 243 GCVQVVQAAVQIGGAIEQEIRIQSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNGLIR 302

Query: 304 RRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRPAFW 363
           RRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRPAFW
Sbjct: 303 RRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRPAFW 362

Query: 364 HSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPKKWKGYDKGGH 423
           HSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPKKWKGYDKGGH
Sbjct: 363 HSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPKKWKGYDKGGH 422

Query: 424 LFLPSYVMRTHGSSRQQEAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESIWAQG 483
           LFLPSYVMRTHGS RQQ+AMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESIW+QG
Sbjct: 423 LFLPSYVMRTHGSIRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESIWSQG 482

Query: 484 GNAAGLVDRKDVPIPEKPLGDLTKWKQSMWKAKKINQELHSQRCDVELKLSVARKMKDEE 543
           GNAAGLVDRKDVPIPEKPLGDLTKWK+SMWKAKKINQELHSQRCDVELKLSVARKMKDEE
Sbjct: 483 GNAAGLVDRKDVPIPEKPLGDLTKWKRSMWKAKKINQELHSQRCDVELKLSVARKMKDEE 542

Query: 544 GFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLYWLKIHLANLYAGG 603
           GFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGL+WLKIHLANLYAGG
Sbjct: 543 GFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAGG 602

Query: 604 VEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSSSPH 663
           VEKLSYDRRLAFVDDHL SIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSSSPH
Sbjct: 603 VEKLSYDRRLAFVDDHLGSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSSSPH 662

Query: 664 T---------DGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMIRDG 723
           T         DGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMIRDG
Sbjct: 663 TVISHLPIHQDGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMIRDG 722

Query: 724 NQDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISDDRL 783
           NQDPTTNPNALLAKILID+VDRKLVKQTVMTSVYGVTF+GAREQIKKRLGEKGLISDDRL
Sbjct: 723 NQDPTTNPNALLAKILIDRVDRKLVKQTVMTSVYGVTFIGAREQIKKRLGEKGLISDDRL 782

Query: 784 LFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQPYYR 843
           LFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQPYYR
Sbjct: 783 LFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQPYYR 842

Query: 844 SERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAG 903
           SERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAG
Sbjct: 843 SERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAG 902

Query: 904 VHDSFWTHACDVDQMNLILREKFVELYSMP----LLEGFETTYPGLTFPPLPERGDFDLR 960
           VHDSFWTHACDVDQMNLILREKFVELYSMP    LLE FETTYPGLTFPPLPERGDFDLR
Sbjct: 903 VHDSFWTHACDVDQMNLILREKFVELYSMPVLDSLLEEFETTYPGLTFPPLPERGDFDLR 962

[Close]

BLAST of Cp4.1LG11g08380 vs. NCBI nr
Match: KAG6599139.1 (DNA-directed RNA polymerase 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1860 bits (4817), Expect = 0.0
Identity = 936/973 (96.20%), Postives = 949/973 (97.53%), Query Frame = 0


Query: 1   MTAAAASFFPALQAPIHGGNAWRKPATRCKCDRKTYSTFNSLSNSLRSSVSFPINFDSSA 60
           MTAAAASFFPALQAPI+GGNAWRKPATRC C+RKTYST NSLSNSLRSSVSFPINFDSSA
Sbjct: 1   MTAAAASFFPALQAPIYGGNAWRKPATRCNCERKTYSTSNSLSNSLRSSVSFPINFDSSA 60

Query: 61  QPLRLQPLPDSVQENFTETLDGSMNLQVPMSGIHHVTHGEPCQRIFIRDPPWIGSLFLKG 120
           QPLRLQPLPDSVQENFTETLDGSMNLQVPMSGIHH+T GEPCQRIFIRDPPWIGSLFLKG
Sbjct: 61  QPLRLQPLPDSVQENFTETLDGSMNLQVPMSGIHHITQGEPCQRIFIRDPPWIGSLFLKG 120

Query: 121 LYKSVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLP 180
           LYKSVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLP
Sbjct: 121 LYKSVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLP 180

Query: 181 YVKTLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVA 240
           YVKTLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVA
Sbjct: 181 YVKTLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVA 240

Query: 241 QQDGCVQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNG 300
           QQDGCVQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKVPGDAQC SKEKEVLRKRVNG
Sbjct: 241 QQDGCVQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKVPGDAQCSSKEKEVLRKRVNG 300

Query: 301 LIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRP 360
           LIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRP
Sbjct: 301 LIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRP 360

Query: 361 AFWHSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPKKWKGYDK 420
           AFWHSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPK+WKGYDK
Sbjct: 361 AFWHSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPKRWKGYDK 420

Query: 421 GGHLFLPSYVMRTHGSSRQQEAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESIW 480
           GGHLFLPSYVMRTHGSSRQQ+AMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSV+ESIW
Sbjct: 421 GGHLFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVMESIW 480

Query: 481 AQGGNAAGLVDRKDVPIPEKPLGDLTKWKQSMWKAKKINQELHSQRCDVELKLSVARKMK 540
           +QGGNAAGLVDRKDVPIP+KPLGDLTKWK+SMWKAKKINQELHSQRCDVELKLSVARKMK
Sbjct: 481 SQGGNAAGLVDRKDVPIPDKPLGDLTKWKRSMWKAKKINQELHSQRCDVELKLSVARKMK 540

Query: 541 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLYWLKIHLANLY 600
           DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGL+WLKIHLANLY
Sbjct: 541 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLY 600

Query: 601 AGGVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSS 660
           AGGVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSS
Sbjct: 601 AGGVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSS 660

Query: 661 SPHT---------DGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMI 720
           SPHT         DGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMI
Sbjct: 661 SPHTVISHLPIHQDGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMI 720

Query: 721 RDGNQDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISD 780
           RDG+QDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISD
Sbjct: 721 RDGSQDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISD 780

Query: 781 DRLLFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQP 840
           DRLLFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQP
Sbjct: 781 DRLLFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQP 840

Query: 841 YYRSERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLR 900
           YYRSERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLR
Sbjct: 841 YYRSERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLR 900

Query: 901 FAGVHDSFWTHACDVDQMNLILREKFVELYSMP----LLEGFETTYPGLTFPPLPERGDF 960
           FAGVHDSFWTHACDVDQMNLILREKFVELYSMP    LLE FETTYPGLTFPPLPERGDF
Sbjct: 901 FAGVHDSFWTHACDVDQMNLILREKFVELYSMPVLDTLLEEFETTYPGLTFPPLPERGDF 960

[Close]

BLAST of Cp4.1LG11g08380 vs. NCBI nr
Match: KAG7030081.1 (DNA-directed RNA polymerase 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1823 bits (4721), Expect = 0.0
Identity = 938/1056 (88.83%), Postives = 950/1056 (89.96%), Query Frame = 0


Query: 1    MTAAAASFFPALQAPIHGGNAWRKPATRCKCDRKTYSTFNSLSNSLRSSVSFPINFDSSA 60
            MTAAAASFFPALQAPI+GGNAWRKPATRC C+RKTYST NSLSNSLRSSVSFPINFDSSA
Sbjct: 1    MTAAAASFFPALQAPIYGGNAWRKPATRCNCERKTYSTSNSLSNSLRSSVSFPINFDSSA 60

Query: 61   QPLRLQPLPDSVQENFTETLDGSMNLQVPMSGIHHVTHGEPCQRIFIRDPPWIGSLFLKG 120
            QPLRLQPLPDSVQENFTETLDGSMNLQVPMSGIHH+T GEPCQRIFIRDPPWIGSLFLKG
Sbjct: 61   QPLRLQPLPDSVQENFTETLDGSMNLQVPMSGIHHITQGEPCQRIFIRDPPWIGSLFLKG 120

Query: 121  LYKSVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLP 180
            LYKSVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLP
Sbjct: 121  LYKSVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLP 180

Query: 181  YVKTLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVA 240
            YVKTLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVA
Sbjct: 181  YVKTLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVA 240

Query: 241  QQDGCVQVVQAAVQIGGAIEQE-----------------------------------VRI 300
            QQDGCVQVVQAAVQIGGAIEQE                                   VRI
Sbjct: 241  QQDGCVQVVQAAVQIGGAIEQELNFFGITLNYVLAKHIVTELFCLVIHRAIYEQTADVRI 300

Query: 301  QSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNGLIRRRRLKEVQKLLKKEEFKAWGRD 360
            QSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNGLIRRRRLKEVQKLLKKEEFKAWGRD
Sbjct: 301  QSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNGLIRRRRLKEVQKLLKKEEFKAWGRD 360

Query: 361  TQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRPAFWHSFKPVAKTPGQKLVKKYGVIE 420
            TQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRPAFWHSFKPVAKTPGQKLVKKYGVIE
Sbjct: 361  TQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRPAFWHSFKPVAKTPGQKLVKKYGVIE 420

Query: 421  CDPIVLAGLDRTAKQMLIPYIPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSSRQQEAMKN 480
            CDPIVLAGLDRTAKQMLIPYIPMLVPPK+WKGYDKGGHLFLPSYVMRTHGSSRQQ+AMKN
Sbjct: 421  CDPIVLAGLDRTAKQMLIPYIPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSSRQQDAMKN 480

Query: 481  ISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESIWAQGGNAAGLVDRKDVPIPEKPLGDL 540
            ISGKQMQKVFEALDMLGSTKWRVNRRVLSV+ESIW+QGGNAAGLVDRKDVPIPEKPLGDL
Sbjct: 481  ISGKQMQKVFEALDMLGSTKWRVNRRVLSVMESIWSQGGNAAGLVDRKDVPIPEKPLGDL 540

Query: 541  TKWKQSMWKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLN 600
            TKWK+SMWKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLN
Sbjct: 541  TKWKRSMWKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLN 600

Query: 601  HLSSDLCRGVLEFAEGRPLGKSGLYWLKIHLANLYAGGVEKLSYDRRLAFVDDHLDSIFD 660
            HLSSDLCRGVLEFAEGRPLGKSGL+WLKIHLANLYAGGVEKLSYDRRLAFVDDHLDSIFD
Sbjct: 601  HLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSYDRRLAFVDDHLDSIFD 660

Query: 661  SASNPVHGDRWWLAAEDPFQCLAACINLSEALRSSSPHT---------DGSCNGLQHYAA 720
            SASNPVHGDRWWLAAEDPFQCLAACINLSEALRSSSPHT         DGSCNGLQHYAA
Sbjct: 661  SASNPVHGDRWWLAAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAA 720

Query: 721  LGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMIRDGNQDPTTNPNALLAKILIDQVDR 780
            LGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMIRDG+QDPTTNPNALLAKILIDQVDR
Sbjct: 721  LGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMIRDGSQDPTTNPNALLAKILIDQVDR 780

Query: 781  KLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISDDRLLFQAACYAAKVTLAALGEIFGA 840
            KLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISDDRLLFQAACYAAKVTLAALGEIFGA
Sbjct: 781  KLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISDDRLLFQAACYAAKVTLAALGEIFGA 840

Query: 841  ARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQPYYRSERHL----------------- 900
            ARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQPYYRSERHL                 
Sbjct: 841  ARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQPYYRSERHLGKPERESPKRTISARGG 900

Query: 901  -------------------------------VRTSLQVLALQREGNSVDVRKQRTAFPPN 960
                                           VRTSLQVLALQREGNSVDVRKQRTAFPPN
Sbjct: 901  LELLQMVSGSNIGQCASEEAEPQKGVDKRLCVRTSLQVLALQREGNSVDVRKQRTAFPPN 960

[Close]

BLAST of Cp4.1LG11g08380 vs. ExPASy TrEMBL
Match: A0A6J1G332 (DNA-directed RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111450352 PE=3 SV=1)

HSP 1 Score: 1877 bits (4862), Expect = 0.0
Identity = 944/973 (97.02%), Postives = 954/973 (98.05%), Query Frame = 0


Query: 1   MTAAAASFFPALQAPIHGGNAWRKPATRCKCDRKTYSTFNSLSNSLRSSVSFPINFDSSA 60
           MTAAAASFFPALQAPI+GGNAWRKPATRC C+RKTYS FNSLSNSLRSSVSFPINFDSSA
Sbjct: 1   MTAAAASFFPALQAPIYGGNAWRKPATRCNCERKTYSAFNSLSNSLRSSVSFPINFDSSA 60

Query: 61  QPLRLQPLPDSVQENFTETLDGSMNLQVPMSGIHHVTHGEPCQRIFIRDPPWIGSLFLKG 120
           QPLRLQPL DSVQENFTETLDGSMNLQVPMSGIHH+T GEPCQRIFIRDPPWIGSLFLKG
Sbjct: 61  QPLRLQPLADSVQENFTETLDGSMNLQVPMSGIHHITQGEPCQRIFIRDPPWIGSLFLKG 120

Query: 121 LYKSVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLP 180
           LYKSVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLP
Sbjct: 121 LYKSVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLP 180

Query: 181 YVKTLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVA 240
           YVKTLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVA
Sbjct: 181 YVKTLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVA 240

Query: 241 QQDGCVQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNG 300
           QQDGCVQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNG
Sbjct: 241 QQDGCVQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNG 300

Query: 301 LIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRP 360
           LIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRP
Sbjct: 301 LIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRP 360

Query: 361 AFWHSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPKKWKGYDK 420
           AFWHSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPK+WKGYDK
Sbjct: 361 AFWHSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPKRWKGYDK 420

Query: 421 GGHLFLPSYVMRTHGSSRQQEAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESIW 480
           GGHLFLPSYVMRTHGSSRQQ+AMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSV+ESIW
Sbjct: 421 GGHLFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVMESIW 480

Query: 481 AQGGNAAGLVDRKDVPIPEKPLGDLTKWKQSMWKAKKINQELHSQRCDVELKLSVARKMK 540
           +QGGNAAGLVDRKDVPIPEKPLGDLTKWK+SMWKAKKINQELHSQRCDVELKLSVARKMK
Sbjct: 481 SQGGNAAGLVDRKDVPIPEKPLGDLTKWKRSMWKAKKINQELHSQRCDVELKLSVARKMK 540

Query: 541 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLYWLKIHLANLY 600
           DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGL+WLKIHLANLY
Sbjct: 541 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLY 600

Query: 601 AGGVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSS 660
           AGGVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSS
Sbjct: 601 AGGVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSS 660

Query: 661 SPHT---------DGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMI 720
           SPHT         DGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMI
Sbjct: 661 SPHTVISHLPIHQDGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMI 720

Query: 721 RDGNQDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISD 780
           RDG+QDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISD
Sbjct: 721 RDGSQDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISD 780

Query: 781 DRLLFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQP 840
           DRLLFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQP
Sbjct: 781 DRLLFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQP 840

Query: 841 YYRSERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLR 900
           YYRSERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLR
Sbjct: 841 YYRSERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLR 900

Query: 901 FAGVHDSFWTHACDVDQMNLILREKFVELYSMP----LLEGFETTYPGLTFPPLPERGDF 960
           FAGVHDSFWTHACDVDQMNLILREKFVELYSMP    LLE FETTYPGLTFPPLPERGDF
Sbjct: 901 FAGVHDSFWTHACDVDQMNLILREKFVELYSMPVLDTLLEEFETTYPGLTFPPLPERGDF 960

[Close]

BLAST of Cp4.1LG11g08380 vs. ExPASy TrEMBL
Match: A0A6J1KHL7 (DNA-directed RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111493929 PE=3 SV=1)

HSP 1 Score: 1866 bits (4833), Expect = 0.0
Identity = 937/970 (96.60%), Postives = 950/970 (97.94%), Query Frame = 0


Query: 4   AAASFFPALQAPIHGGNAWRKPATRCKCDRKTYSTFNSLSNSLRSSVSFPINFDSSAQPL 63
           AAASFFPALQAPI+GGNAWRKPATRCKC+RKTYST NSLSNSLRSSVSFPINFDSSAQPL
Sbjct: 3   AAASFFPALQAPIYGGNAWRKPATRCKCERKTYSTSNSLSNSLRSSVSFPINFDSSAQPL 62

Query: 64  RLQPLPDSVQENFTETLDGSMNLQVPMSGIHHVTHGEPCQRIFIRDPPWIGSLFLKGLYK 123
           RLQPL DSVQENFTETLDGSMN+QVPMSGIHH+T GEPC+RIFIRDPPWIGSLFLKGLYK
Sbjct: 63  RLQPLADSVQENFTETLDGSMNMQVPMSGIHHITQGEPCRRIFIRDPPWIGSLFLKGLYK 122

Query: 124 SVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLPYVK 183
           SVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLPYVK
Sbjct: 123 SVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLPYVK 182

Query: 184 TLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVAQQD 243
           TLFLGWFEPLKQAIEKEQKKQ+TKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVAQQD
Sbjct: 183 TLFLGWFEPLKQAIEKEQKKQRTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVAQQD 242

Query: 244 GCVQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNGLIR 303
           GCVQVVQAAVQIGGAIEQE+RIQSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNGLIR
Sbjct: 243 GCVQVVQAAVQIGGAIEQEIRIQSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNGLIR 302

Query: 304 RRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRPAFW 363
           RRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRPAFW
Sbjct: 303 RRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRPAFW 362

Query: 364 HSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPKKWKGYDKGGH 423
           HSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPKKWKGYDKGGH
Sbjct: 363 HSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPKKWKGYDKGGH 422

Query: 424 LFLPSYVMRTHGSSRQQEAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESIWAQG 483
           LFLPSYVMRTHGS RQQ+AMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESIW+QG
Sbjct: 423 LFLPSYVMRTHGSIRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESIWSQG 482

Query: 484 GNAAGLVDRKDVPIPEKPLGDLTKWKQSMWKAKKINQELHSQRCDVELKLSVARKMKDEE 543
           GNAAGLVDRKDVPIPEKPLGDLTKWK+SMWKAKKINQELHSQRCDVELKLSVARKMKDEE
Sbjct: 483 GNAAGLVDRKDVPIPEKPLGDLTKWKRSMWKAKKINQELHSQRCDVELKLSVARKMKDEE 542

Query: 544 GFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLYWLKIHLANLYAGG 603
           GFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGL+WLKIHLANLYAGG
Sbjct: 543 GFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAGG 602

Query: 604 VEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSSSPH 663
           VEKLSYDRRLAFVDDHL SIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSSSPH
Sbjct: 603 VEKLSYDRRLAFVDDHLGSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSSSPH 662

Query: 664 T---------DGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMIRDG 723
           T         DGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMIRDG
Sbjct: 663 TVISHLPIHQDGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMIRDG 722

Query: 724 NQDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISDDRL 783
           NQDPTTNPNALLAKILID+VDRKLVKQTVMTSVYGVTF+GAREQIKKRLGEKGLISDDRL
Sbjct: 723 NQDPTTNPNALLAKILIDRVDRKLVKQTVMTSVYGVTFIGAREQIKKRLGEKGLISDDRL 782

Query: 784 LFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQPYYR 843
           LFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQPYYR
Sbjct: 783 LFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQPYYR 842

Query: 844 SERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAG 903
           SERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAG
Sbjct: 843 SERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAG 902

Query: 904 VHDSFWTHACDVDQMNLILREKFVELYSMP----LLEGFETTYPGLTFPPLPERGDFDLR 960
           VHDSFWTHACDVDQMNLILREKFVELYSMP    LLE FETTYPGLTFPPLPERGDFDLR
Sbjct: 903 VHDSFWTHACDVDQMNLILREKFVELYSMPVLDSLLEEFETTYPGLTFPPLPERGDFDLR 962

[Close]

BLAST of Cp4.1LG11g08380 vs. ExPASy TrEMBL
Match: A0A6J1E061 (DNA-directed RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111024704 PE=3 SV=1)

HSP 1 Score: 1718 bits (4450), Expect = 0.0
Identity = 870/975 (89.23%), Postives = 908/975 (93.13%), Query Frame = 0


Query: 6   ASFFPALQAPIHGGNAWRKPATRCKCDRKTY----STFNSLSNSLRSSVSFPINFDSSAQ 65
           ASFFP LQAPI+GGNAWRKP  RC C+R+T+    STFNSLSNS  SSVSFP N DS+A+
Sbjct: 5   ASFFPTLQAPIYGGNAWRKPTKRCNCERRTHLSFTSTFNSLSNSPLSSVSFPTNSDSTAE 64

Query: 66  PLRLQPLPDSVQENFTETLDGSMNLQVPMSGIHHVTHGEPCQRIFIRDPPWIGSLFLKGL 125
           P+RLQPL DSVQENFTETLD SMNLQVP          E CQRIFI+DPPWI SLFLKGL
Sbjct: 65  PVRLQPLADSVQENFTETLDNSMNLQVPTR--------ESCQRIFIQDPPWIASLFLKGL 124

Query: 126 YKSVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLPY 185
           YKSV+KEVKLEFKEI KRKYNLLRRRQIKAETEAWE+M EEYKELEREMCEKKLAPNLPY
Sbjct: 125 YKSVQKEVKLEFKEIEKRKYNLLRRRQIKAETEAWERMVEEYKELEREMCEKKLAPNLPY 184

Query: 186 VKTLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVAQ 245
           VKTLFLGWFEPLKQAIEKEQ  Q++KKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVAQ
Sbjct: 185 VKTLFLGWFEPLKQAIEKEQNTQRSKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVAQ 244

Query: 246 QDGCVQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNGL 305
           QDGCVQVVQAAVQIGGAIEQEVRIQS LEKARSNQRTK+P DAQCLSKEKE+LRKRVNGL
Sbjct: 245 QDGCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKIPADAQCLSKEKEILRKRVNGL 304

Query: 306 IRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRPA 365
           IRRRRLKEVQKLLKKEEFKAWGRDTQAKLGS LI+LLIESAF+QPPVSQS D PPDIRPA
Sbjct: 305 IRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADCPPDIRPA 364

Query: 366 FWHSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPKKWKGYDKG 425
           FWH FKPV KTPGQK+VK YGVIECDPIVLAGLDRTAK +LIPYIPMLVPPKKWKGYDKG
Sbjct: 365 FWHRFKPVTKTPGQKIVKTYGVIECDPIVLAGLDRTAKHVLIPYIPMLVPPKKWKGYDKG 424

Query: 426 GHLFLPSYVMRTHGSSRQQEAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESIWA 485
           GHLFLPSYVMRTHGSSRQQ+AMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESIWA
Sbjct: 425 GHLFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESIWA 484

Query: 486 QGGNAAGLVDRKDVPIPEKPLGDLTK---WKQSMWKAKKINQELHSQRCDVELKLSVARK 545
           QGGN AGLVDRKDVPIPE+PLGDLT+   WK S+ KAKKINQELHSQRCDVELKLSVARK
Sbjct: 485 QGGNTAGLVDRKDVPIPEQPLGDLTEMQEWKWSVRKAKKINQELHSQRCDVELKLSVARK 544

Query: 546 MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLYWLKIHLAN 605
           M+DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGL+WLKIHLAN
Sbjct: 545 MRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLAN 604

Query: 606 LYAGGVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALR 665
           LYAGGVEKLSYDRRLAFVDDHLDSIFDSASNPV+G+RWWL AEDPFQCLAACINLSEAL+
Sbjct: 605 LYAGGVEKLSYDRRLAFVDDHLDSIFDSASNPVNGNRWWLTAEDPFQCLAACINLSEALK 664

Query: 666 SSSPHT---------DGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNI 725
           SSSPHT         DGSCNGLQHYAALGRDTFEAAAVNLVAG+KPADVY+EIAARVHNI
Sbjct: 665 SSSPHTVISHLPIHQDGSCNGLQHYAALGRDTFEAAAVNLVAGEKPADVYTEIAARVHNI 724

Query: 726 MIRDGNQDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLI 785
           MIRDGN+DP TNPNALLAKILIDQVDRKLVKQTVMTSVYGVT+VGAREQIKKRL EKGLI
Sbjct: 725 MIRDGNKDPATNPNALLAKILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLI 784

Query: 786 SDDRLLFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVV 845
           SDDRLLF+AACYAAKVTLAALGEIF AARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVV
Sbjct: 785 SDDRLLFRAACYAAKVTLAALGEIFEAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVV 844

Query: 846 QPYYRSERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAG 905
           QPYY+SERHL+RTSLQVLAL+REGNSVDVRK RTAFPPNFVHSLDGSHMMLTALACRDAG
Sbjct: 845 QPYYKSERHLIRTSLQVLALRREGNSVDVRKHRTAFPPNFVHSLDGSHMMLTALACRDAG 904

Query: 906 LRFAGVHDSFWTHACDVDQMNLILREKFVELYSMP----LLEGFETTYPGLTFPPLPERG 960
           LRFAGVHDSFWTHACDVDQMN+ILRE FVELY+MP    LLEGFETTYPGLTFP LP+RG
Sbjct: 905 LRFAGVHDSFWTHACDVDQMNVILRETFVELYNMPVLESLLEGFETTYPGLTFPSLPDRG 964

[Close]

BLAST of Cp4.1LG11g08380 vs. ExPASy TrEMBL
Match: A0A1S3BU26 (DNA-directed RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103493541 PE=3 SV=1)

HSP 1 Score: 1701 bits (4404), Expect = 0.0
Identity = 855/971 (88.05%), Postives = 899/971 (92.58%), Query Frame = 0


Query: 6   ASFFPALQAPIHGGNAWRKPATRCKCDRKTYSTFNSLSNSLRSSVSFPINFDSSAQPLRL 65
           ASFFP LQAPIHG NAW+KP  R KC+RKT ++F S  NS  SSVSFPINFDS++QP  L
Sbjct: 5   ASFFPTLQAPIHGSNAWKKPTKRWKCERKTQTSFTSTFNSSLSSVSFPINFDSTSQPFHL 64

Query: 66  QPLPDSVQENFTETLDGSMNLQVPMSGIHHVTHGEPCQRIFIRDPPWIGSLFLKGLYKSV 125
           QPL DSV ENFTETLD SMNLQ+P S IH +T  E  QRIFI+DPPWI SLFLKGLYK V
Sbjct: 65  QPLADSVHENFTETLDNSMNLQIPTSEIHQITREESGQRIFIQDPPWIASLFLKGLYKCV 124

Query: 126 EKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLPYVKTL 185
           +KEVKLEF +I KRKYNLLRRRQIKAETEAWEKM +EYKELEREMCEKKLAPNLPYVKTL
Sbjct: 125 QKEVKLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPYVKTL 184

Query: 186 FLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVAQQDGC 245
           FLGWFEPLKQAIEKEQK Q++KKQKAAFAPHIELLSADK+AVIVMYKMMGLLMVAQQD C
Sbjct: 185 FLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVAQQDCC 244

Query: 246 VQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNGLIRRR 305
           VQVVQAAVQIGGAIEQEVRIQS LEKARSNQRTKVP D +CLSKEKEVLRKRVNG IRRR
Sbjct: 245 VQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKRVNGFIRRR 304

Query: 306 RLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRPAFWHS 365
           RLKEVQKLLKKEEFKAWGRDTQAKLGS LI+LLIESAF+QPPVSQS DSPPD+RPAFWH 
Sbjct: 305 RLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPAFWHG 364

Query: 366 FKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPKKWKGYDKGGHLF 425
           FKPVAKTPGQ  VKKYGVIECDPIVLAGLD+TAK MLIPYIPMLVPPKKWKGYDKGGH F
Sbjct: 365 FKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKGGHFF 424

Query: 426 LPSYVMRTHGSSRQQEAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESIWAQGGN 485
           LPSYVMRTHGSSRQQ+AMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVES+WAQGGN
Sbjct: 425 LPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWAQGGN 484

Query: 486 AAGLVDRKDVPIPEKPLGDLTK---WKQSMWKAKKINQELHSQRCDVELKLSVARKMKDE 545
            AGLVDRKDVPIPEK LGDLT+   W+ SM KAKKINQELHSQRCDVELKLSVARKMKDE
Sbjct: 485 TAGLVDRKDVPIPEKQLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDE 544

Query: 546 EGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLYWLKIHLANLYAG 605
           EGFYYPHN+DFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGL+WLKIHLANLYAG
Sbjct: 545 EGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAG 604

Query: 606 GVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSSSP 665
           GVEKLSYDRRLAFVDDHLD+IFDSASNPV+GDRWWL AEDPFQCLAAC+NLSEAL+SS+P
Sbjct: 605 GVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAP 664

Query: 666 HT---------DGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMIRD 725
           HT         DGSCNGLQHYAALGRDT EAAAVNLVAG+KPADVYSEIAARVH IMIRD
Sbjct: 665 HTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRD 724

Query: 726 GNQDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISDDR 785
            N+DPTTNPNA LAK+LIDQVDRKLVKQTVMTSVYGVT+VGAREQIKKRL EKGLISDDR
Sbjct: 725 ANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLISDDR 784

Query: 786 LLFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQPYY 845
           LLF+A+CYAAKVTLAALGEIF AARGIM WLGDCAKVIA DNQPVRWTTPLGLPVVQPYY
Sbjct: 785 LLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYY 844

Query: 846 RSERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFA 905
           +SERHL+RTSLQVLAL+REGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFA
Sbjct: 845 KSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFA 904

Query: 906 GVHDSFWTHACDVDQMNLILREKFVELYSMP----LLEGFETTYPGLTFPPLPERGDFDL 960
           GVHDSFWTHACDVD+MNLILREKFVELYSMP    LLEGFETTYPGLTFP LPERGDF+L
Sbjct: 905 GVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERGDFNL 964

[Close]

BLAST of Cp4.1LG11g08380 vs. ExPASy TrEMBL
Match: A0A0A0LH38 (DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_2G036610 PE=3 SV=1)

HSP 1 Score: 1691 bits (4379), Expect = 0.0
Identity = 848/973 (87.15%), Postives = 898/973 (92.29%), Query Frame = 0


Query: 4   AAASFFPALQAPIHGGNAWRKPATRCKCDRKTYSTFNSLSNSLRSSVSFPINFDSSAQPL 63
           A ASFFP LQAPIHG NAW+KP  R KC+RKT+++F S  NS  SSVSFP+NFDS++Q L
Sbjct: 3   ATASFFPTLQAPIHGSNAWKKPTKRWKCERKTHTSFTSTFNSPLSSVSFPVNFDSTSQSL 62

Query: 64  RLQPLPDSVQENFTETLDGSMNLQVPMSGIHHVTHGEPCQRIFIRDPPWIGSLFLKGLYK 123
            LQPL DSV ENFTETLD SMNLQ+P+S IH +T GE  +RIFI+DPPWI SLFLKGLYK
Sbjct: 63  HLQPLADSVHENFTETLDNSMNLQIPISEIHQITRGESSKRIFIQDPPWIASLFLKGLYK 122

Query: 124 SVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLPYVK 183
            V+KEVKLEF EI KRKYNLLRRRQIKAETEAWEKM EEYKELEREMCEKKLAPNLPYVK
Sbjct: 123 CVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAPNLPYVK 182

Query: 184 TLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMVAQQD 243
            LFLGWFEPLK AIE+EQK Q++KKQKAAFAPHIELLSADKMAVIVMYKMMGLLM+A QD
Sbjct: 183 KLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMMAAQD 242

Query: 244 GCVQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKVPGDAQCLSKEKEVLRKRVNGLIR 303
           GCVQVVQAAVQIGGAIEQEVRIQS+LEKARSNQRTKV  D +CL+KEKEVLRK+VNGLIR
Sbjct: 243 GCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRTKVRADTECLTKEKEVLRKQVNGLIR 302

Query: 304 RRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRPAFW 363
           RR+LKEVQKLLKKEEFKAWGRDTQAKLGS LI+LLIESAF+QPPVSQS DSPPDIRPAFW
Sbjct: 303 RRKLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDIRPAFW 362

Query: 364 HSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPKKWKGYDKGGH 423
           H FKPVAKTPGQ  VKKYGV+ECDPIVLAGLDRTAK MLIPYIPMLVPPKKWKGYDKGGH
Sbjct: 363 HGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKGYDKGGH 422

Query: 424 LFLPSYVMRTHGSSRQQEAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESIWAQG 483
            FLPSYVMRTHGSSRQQ+AMKNISGKQMQKVFEALDMLGSTKWRVNR VLSVVES+WAQG
Sbjct: 423 FFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLSVVESLWAQG 482

Query: 484 GNAAGLVDRKDVPIPEKPLGDLTK---WKQSMWKAKKINQELHSQRCDVELKLSVARKMK 543
           GN AGLVDRKDVPIPEKPLGDLT+   W+ SM KAKKINQELHSQRCDVELKLSVARKMK
Sbjct: 483 GNTAGLVDRKDVPIPEKPLGDLTEMQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMK 542

Query: 544 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLYWLKIHLANLY 603
           DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGL+WLKIHLANLY
Sbjct: 543 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLY 602

Query: 604 AGGVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSS 663
           AGGVEKLSYD RLAFVDDHLD+IFDSASNPV+GDRWWL AEDPFQCLAAC+NLSEAL+SS
Sbjct: 603 AGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSS 662

Query: 664 SPHT---------DGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMI 723
           +PHT         DGSCNGLQHYAALGRDT EAAAVNLVAG+KPADVYSEIAARVH IMI
Sbjct: 663 APHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMI 722

Query: 724 RDGNQDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISD 783
           RD ++DPTTNPNA LAK+LIDQVDRKLVKQTVMTSVYGVT++GAREQIK+RL EKGLISD
Sbjct: 723 RDASKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGLISD 782

Query: 784 DRLLFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQP 843
           DRL F+A+CYAAKVTL+ALGEIF AARGIM WLGDCAKVIA DNQPVRWTTPLGLPVVQP
Sbjct: 783 DRLRFRASCYAAKVTLSALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQP 842

Query: 844 YYRSERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLR 903
           YY+SERHL+RTSLQVLALQREGN VDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLR
Sbjct: 843 YYKSERHLIRTSLQVLALQREGNLVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLR 902

Query: 904 FAGVHDSFWTHACDVDQMNLILREKFVELYSMP----LLEGFETTYPGLTFPPLPERGDF 960
           FAGVHDSFWTHACDVD+MNLILREKFVELYSMP    LLEGFETTYPGLTFP LP RGDF
Sbjct: 903 FAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPGRGDF 962

[Close]

BLAST of Cp4.1LG11g08380 vs. TAIR 10
Match: AT2G24120.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 1302.0 bits (3368), Expect = 0.0e+00
Identity = 639/877 (72.86%), Postives = 747/877 (85.18%), Query Frame = 0


Query: 103 QRIFIRDPPWIGSLFLKGLYKSVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEE 162
           +R+F++DPPWI +LFLKGL K V++ +K+E K+I KRK++ LRRRQ+K ETEAWE+M +E
Sbjct: 121 RRLFMQDPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDE 180

Query: 163 YKELEREMCEKKLAPNLPYVKTLFLGWFEPLKQAIEKEQK--KQQTKKQKAAFAPHIELL 222
           Y++LE+EMCEK LAPNLPYVK +FLGWF+PLK  IE+EQK  K ++KK +AA+APHIELL
Sbjct: 181 YRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELL 240

Query: 223 SADKMAVIVMYKMMGLLMVAQQDGCVQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKV 282
            ADKMAVIVM+KMMGL+M   +DGC+QVVQAAV IG AIEQEVRI + L++ R N     
Sbjct: 241 PADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRTRKNN---- 300

Query: 283 PGDAQCLSKEKEVLRKRVNGLIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIE 342
            GD+Q   KEK++LRKRVN LIRR+R+ +  K++K E  K WGR TQAKLGS L++LLIE
Sbjct: 301 AGDSQEELKEKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIE 360

Query: 343 SAFVQPPVSQSPDSPPDIRPAFWHSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQ 402
           +A+VQPP++QS DS P+ RPAF H FK V K PG KLV++YGVIECD ++LAGLD++AK 
Sbjct: 361 AAYVQPPLTQSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKH 420

Query: 403 MLIPYIPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSSRQQEAMKNISGKQMQKVFEALDM 462
           MLIPY+PMLVPPK+WKGYDKGG+LFLPSY+MRTHGS +QQ+A+K+IS K   +VFEALD 
Sbjct: 421 MLIPYVPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDT 480

Query: 463 LGSTKWRVNRRVLSVVESIWAQGGNAAGLVDRKDVPIPEKPLG----DLTKWKQSMWKAK 522
           LG+TKWRVNR +L VVE +WA GGN AGLV+R+DVPIPEKP      +L  WK S  KA 
Sbjct: 481 LGNTKWRVNRNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKAN 540

Query: 523 KINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVL 582
           KIN+E HS RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG L
Sbjct: 541 KINRERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTL 600

Query: 583 EFAEGRPLGKSGLYWLKIHLANLYAGGVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRW 642
           EFAEGRPLGKSGL+WLKIHLANLYAGGVEKLS+D RLAFV++HLD I DSA NP+HG RW
Sbjct: 601 EFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRW 660

Query: 643 WLAAEDPFQCLAACINLSEALRSSSP---------HTDGSCNGLQHYAALGRDTFEAAAV 702
           WL AEDPFQCLAAC+ L++AL+S SP         H DGSCNGLQHYAALGRD+FEAAAV
Sbjct: 661 WLKAEDPFQCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAV 720

Query: 703 NLVAGDKPADVYSEIAARVHNIMIRDGNQDPTTNPNALLAKILIDQVDRKLVKQTVMTSV 762
           NLVAG+KPADVYSEI+ RVH IM +D ++DP +NP A LAKILI QVDRKLVKQTVMTSV
Sbjct: 721 NLVAGEKPADVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSV 780

Query: 763 YGVTFVGAREQIKKRLGEKGLISDDRLLFQAACYAAKVTLAALGEIFGAARGIMSWLGDC 822
           YGVT+VGAREQIK+RL EKG+I+D+R+LF AACY+AKVTLAALGEIF AAR IMSWLGDC
Sbjct: 781 YGVTYVGAREQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDC 840

Query: 823 AKVIAADNQPVRWTTPLGLPVVQPYYRSERHLVRTSLQVLALQREGNSVDVRKQRTAFPP 882
           AK+IA+DN PVRW TPLGLPVVQPY RSERHL+RTSLQVLALQREGN+VDVRKQRTAFPP
Sbjct: 841 AKIIASDNHPVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPP 900

Query: 883 NFVHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDQMNLILREKFVELYSMPLLE 942
           NFVHSLDG+HMM+TA+ACR+AGL FAGVHDS+WTHACDVD MN ILREKFVELY+ P+LE
Sbjct: 901 NFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELYNTPILE 960

Query: 943 ----GFETTYPGLTFPPLPERGDFDLRGVLKSPYFFN 961
                F+ +YP L FPP+P+RGDFDL+ VLKS YFFN
Sbjct: 961 DLLQSFQESYPNLVFPPVPKRGDFDLKEVLKSQYFFN 993

[Close]

BLAST of Cp4.1LG11g08380 vs. TAIR 10
Match: AT2G24120.2 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 1123.6 bits (2905), Expect = 0.0e+00
Identity = 557/769 (72.43%), Postives = 653/769 (84.92%), Query Frame = 0


Query: 103 QRIFIRDPPWIGSLFLKGLYKSVEKEVKLEFKEIGKRKYNLLRRRQIKAETEAWEKMAEE 162
           +R+F++DPPWI +LFLKGL K V++ +K+E K+I KRK++ LRRRQ+K ETEAWE+M +E
Sbjct: 121 RRLFMQDPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDE 180

Query: 163 YKELEREMCEKKLAPNLPYVKTLFLGWFEPLKQAIEKEQK--KQQTKKQKAAFAPHIELL 222
           Y++LE+EMCEK LAPNLPYVK +FLGWF+PLK  IE+EQK  K ++KK +AA+APHIELL
Sbjct: 181 YRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELL 240

Query: 223 SADKMAVIVMYKMMGLLMVAQQDGCVQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKV 282
            ADKMAVIVM+KMMGL+M   +DGC+QVVQAAV IG AIEQEVRI + L++ R N     
Sbjct: 241 PADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRTRKNN---- 300

Query: 283 PGDAQCLSKEKEVLRKRVNGLIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSCLIQLLIE 342
            GD+Q   KEK++LRKRVN LIRR+R+ +  K++K E  K WGR TQAKLGS L++LLIE
Sbjct: 301 AGDSQEELKEKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIE 360

Query: 343 SAFVQPPVSQSPDSPPDIRPAFWHSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQ 402
           +A+VQPP++QS DS P+ RPAF H FK V K PG KLV++YGVIECD ++LAGLD++AK 
Sbjct: 361 AAYVQPPLTQSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKH 420

Query: 403 MLIPYIPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSSRQQEAMKNISGKQMQKVFEALDM 462
           MLIPY+PMLVPPK+WKGYDKGG+LFLPSY+MRTHGS +QQ+A+K+IS K   +VFEALD 
Sbjct: 421 MLIPYVPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDT 480

Query: 463 LGSTKWRVNRRVLSVVESIWAQGGNAAGLVDRKDVPIPEKPLG----DLTKWKQSMWKAK 522
           LG+TKWRVNR +L VVE +WA GGN AGLV+R+DVPIPEKP      +L  WK S  KA 
Sbjct: 481 LGNTKWRVNRNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKAN 540

Query: 523 KINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVL 582
           KIN+E HS RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG L
Sbjct: 541 KINRERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTL 600

Query: 583 EFAEGRPLGKSGLYWLKIHLANLYAGGVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRW 642
           EFAEGRPLGKSGL+WLKIHLANLYAGGVEKLS+D RLAFV++HLD I DSA NP+HG RW
Sbjct: 601 EFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRW 660

Query: 643 WLAAEDPFQCLAACINLSEALRSSSP---------HTDGSCNGLQHYAALGRDTFEAAAV 702
           WL AEDPFQCLAAC+ L++AL+S SP         H DGSCNGLQHYAALGRD+FEAAAV
Sbjct: 661 WLKAEDPFQCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAV 720

Query: 703 NLVAGDKPADVYSEIAARVHNIMIRDGNQDPTTNPNALLAKILIDQVDRKLVKQTVMTSV 762
           NLVAG+KPADVYSEI+ RVH IM +D ++DP +NP A LAKILI QVDRKLVKQTVMTSV
Sbjct: 721 NLVAGEKPADVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSV 780

Query: 763 YGVTFVGAREQIKKRLGEKGLISDDRLLFQAACYAAKVTLAALGEIFGAARGIMSWLGDC 822
           YGVT+VGAREQIK+RL EKG+I+D+R+LF AACY+AKVTLAALGEIF AAR IMSWLGDC
Sbjct: 781 YGVTYVGAREQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDC 840

Query: 823 AKVIAADNQPVRWTTPLGLPVVQPYYRSERHLVRTSLQVLALQREGNSV 857
           AK+IA+DN PVRW TPLGLPVVQPY RSERHL+RTSLQVLALQREGN+V
Sbjct: 841 AKIIASDNHPVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTV 885

[Close]

BLAST of Cp4.1LG11g08380 vs. TAIR 10
Match: AT5G15700.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 1060.8 bits (2742), Expect = 6.4e-310
Identity = 537/871 (61.65%), Postives = 664/871 (76.23%), Query Frame = 0


Query: 121  LYKSVEKEVKLEFKE-----------IGKRKYNLLRRRQIKAETEAWEKMAEEYKELERE 180
            L K ++KE K E              +G+ K+  L RRQ+K ETE WE+ A EY EL  +
Sbjct: 143  LLKEMKKEKKRESHRSWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTD 202

Query: 181  MCEKKLAPNLPYVKTLFLGWFEPLKQAIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIV 240
            MCE+KLAPNLPYVK+LFLGWFEPL+ AI K+Q+  +  K KA +A +++ L ADK++VI 
Sbjct: 203  MCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVIT 262

Query: 241  MYKMMGLLMVAQQDGCVQVVQAAVQIGGAIEQEVRIQSLLEKARSNQRTKVPG--DAQCL 300
            M+K+MG LM    +GCV+VV AA  +G AIEQE+RI + L+K +     +  G  + +  
Sbjct: 263  MHKLMGHLMTGGDNGCVKVVHAACTVGDAIEQEIRICTFLDKKKKGDDNEESGGVENETS 322

Query: 301  SKEKEVLRKRVNGLIRRRRLKEVQKLLKKEEF-KAWGRDTQAKLGSCLIQLLIESAFVQP 360
             KE++ LRK+VN LI++++L  V+K+L+  ++ K W  D +AK+GS LI+LL+ +A++Q 
Sbjct: 323  MKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQS 382

Query: 361  PVSQSPDSPPDIRPAFWHSFKPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYI 420
            P  Q  +  PD+RPAF H+FK VAK       +KYGVIECDP+V  GL+++ +  ++PY+
Sbjct: 383  PADQQDNDLPDVRPAFVHTFK-VAK-GSMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYM 442

Query: 421  PMLVPPKKWKGYDKGGHLFLPSYVMRTHGSSRQQEAMKNISGKQMQKVFEALDMLGSTKW 480
            PMLVPP KW GYDKG +LFL SY+M+THG+ +Q+EA+K+    Q+Q VFEALD LGSTKW
Sbjct: 443  PMLVPPLKWSGYDKGAYLFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTLGSTKW 502

Query: 481  RVNRRVLSVVESIWAQGGNAAGLVDRKDVPIPEKP----LGDLTKWKQSMWKAKKINQEL 540
            RVN+RVL+VV+ IW+ GG  A +VDR DVP+PEKP     G L KWK  +  AKK+N E 
Sbjct: 503  RVNKRVLTVVDRIWSSGGCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSER 562

Query: 541  HSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGR 600
            HSQRCD ELKLSVARKMKDEE FYYPHN+DFRGRAYPM PHLNHL SDLCRGVLEFAEGR
Sbjct: 563  HSQRCDTELKLSVARKMKDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGR 622

Query: 601  PLGKSGLYWLKIHLANLYAGGVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAED 660
            P+G SGL WLKIHLANLYAGGV+KLS D RLAF ++HLD IFDSA  P+ G RWWL AED
Sbjct: 623  PMGISGLRWLKIHLANLYAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQAED 682

Query: 661  PFQCLAACINLSEALRSSSP---------HTDGSCNGLQHYAALGRDTFEAAAVNLVAGD 720
            PFQCLA CI+L+EALRS SP         H DGSCNGLQHYAALGRDT  A AVNLVAG+
Sbjct: 683  PFQCLAVCISLTEALRSPSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGE 742

Query: 721  KPADVYSEIAARVHNIMIRDGNQDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFV 780
            KPADVYS IA RV +IM RD ++DP   P AL A+ L++QVDRKLVKQTVMTSVYGVT++
Sbjct: 743  KPADVYSGIATRVLDIMRRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVTYI 802

Query: 781  GAREQIKKRLGEKGLISDDRLLFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAA 840
            GAR+QIK+RL E+    D++ +F AACYAAKVTLAA+ E+F AAR IM W G+CAK+IA+
Sbjct: 803  GARDQIKRRLKERSDFGDEKEVFGAACYAAKVTLAAIDEMFQAARAIMRWFGECAKIIAS 862

Query: 841  DNQPVRWTTPLGLPVVQPYYRSERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSL 900
            +N+ VRWTTPLGLPVVQPY++    LV+TSLQ L+LQ E + V VR+QRTAFPPNF+HSL
Sbjct: 863  ENETVRWTTPLGLPVVQPYHQMGTKLVKTSLQTLSLQHETDQVIVRRQRTAFPPNFIHSL 922

Query: 901  DGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDQMNLILREKFVELYSMP----LLEGF 960
            DGSHMM+TA+AC+ AG+ FAGVHDSFWTHACDVD++N+ILREKFVELYS P    LLE F
Sbjct: 923  DGSHMMMTAVACKRAGVCFAGVHDSFWTHACDVDKLNIILREKFVELYSQPILENLLESF 982

[Close]

BLAST of Cp4.1LG11g08380 vs. TAIR 10
Match: AT1G68990.1 (male gametophyte defective 3 )

HSP 1 Score: 1059.3 bits (2738), Expect = 1.8e-309
Identity = 525/851 (61.69%), Postives = 651/851 (76.50%), Query Frame = 0


Query: 136 IGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLPYVKTLFLGWFEPLKQ 195
           +G +K+ +L++RQ+K ETE WE+ A E +E+  +MCE+KLAPNLPY+K+LFLGWFEP++ 
Sbjct: 127 MGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRN 186

Query: 196 AIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMV-AQQDGCVQVVQAAVQ 255
           AI+ +    + KK K  +AP +E L ADKMAVI M+KMMGLLM  A+  G V++V AA Q
Sbjct: 187 AIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQ 246

Query: 256 IGGAIEQEVRIQSLLEKARSNQRTKVPGDAQC-------LSKEKEVLRKRVNGLIRRRRL 315
           IG A+EQEVRI S L+K      T    + +        ++KE E  RK+V  L+ + +L
Sbjct: 247 IGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEKNKL 306

Query: 316 KEVQKLLKK-EEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRPAFWHSF 375
           ++V+ L++K + FK WG++ Q K+G+ LIQLL+E+A++QPP  Q  D PPDIRPAF  +F
Sbjct: 307 RQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNF 366

Query: 376 KPVAKTPGQKLVKKYGVIECDPIVLAGLDRTAKQMLIPYIPMLVPPKKWKGYDKGGHLFL 435
           + V      K  ++YG IECDP+VL GLD++A+ M+IPY+PML+PP+ W GYD+G H FL
Sbjct: 367 RTVT-LENTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAHFFL 426

Query: 436 PSYVMRTHGSSRQQEAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESIWAQGGNA 495
           PSYVMRTHG+ +Q+  MK    +Q++ V+EALD LG+TKW++N++VLS+V+ IWA GG  
Sbjct: 427 PSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTKWKINKKVLSLVDRIWANGGRI 486

Query: 496 AGLVDRKDVPIPEKP-LGDLTKWKQSMWKAKKI---NQELHSQRCDVELKLSVARKMKDE 555
            GLVDR+DVPIPE+P   D  K+K   W++KK    N E HSQRCD+ELKL VARKMKDE
Sbjct: 487 GGLVDREDVPIPEEPEREDQEKFKNWRWESKKAIKQNNERHSQRCDIELKLEVARKMKDE 546

Query: 556 EGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLYWLKIHLANLYAG 615
           EGFYYPHN+DFRGRAYP+HP+LNHL SDLCRG+LEF EG+PLGKSGL WLKIH+ANLYAG
Sbjct: 547 EGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIHIANLYAG 606

Query: 616 GVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSEALRSSSP 675
           GV+KL+Y+ R+AF + HL+ IFDS+  P+ G RWWL AEDPFQCLAACINLSEALRS  P
Sbjct: 607 GVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAEDPFQCLAACINLSEALRSPFP 666

Query: 676 ---------HTDGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARVHNIMIRD 735
                    H DGSCNGLQHYAALGRD   A AVNLV G+KPADVY+EIAARV  IM +D
Sbjct: 667 EAAISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTGEKPADVYTEIAARVLKIMQQD 726

Query: 736 GNQDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKKRLGEKGLISDDR 795
             +DP T PNA  AK+++DQVDRKLVKQTVMTSVYGVT+ GAR+QIKKRL E+G   DD 
Sbjct: 727 AEEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSGARDQIKKRLKERGTFEDDS 786

Query: 796 LLFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGLPVVQPYY 855
           L F A+CYAAK+TL AL E+F AAR I SW GDCAK+IA++N  V WTTPLGLPVVQPY 
Sbjct: 787 LTFHASCYAAKITLKALEEMFEAARAIKSWFGDCAKIIASENNAVCWTTPLGLPVVQPYR 846

Query: 856 RSERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFA 915
           +  RHLV+T+LQVL L RE + V  R+Q TAF PNF+HSLDGSHMM+TA+AC  AGL FA
Sbjct: 847 KPGRHLVKTTLQVLTLSRETDKVMARRQMTAFAPNFIHSLDGSHMMMTAVACNRAGLSFA 906

Query: 916 GVHDSFWTHACDVDQMNLILREKFVELYSMP----LLEGFETTYPGLTFPPLPERGDFDL 961
           GVHDSFWTHACDVD MN ILREKFVELY  P    LLE F+ ++P ++FPPLPERGDFDL
Sbjct: 907 GVHDSFWTHACDVDVMNTILREKFVELYEKPILENLLESFQKSFPDISFPPLPERGDFDL 966

[Close]

BLAST of Cp4.1LG11g08380 vs. TAIR 10
Match: AT1G68990.2 (male gametophyte defective 3 )

HSP 1 Score: 1052.4 bits (2720), Expect = 2.3e-307
Identity = 525/858 (61.19%), Postives = 651/858 (75.87%), Query Frame = 0


Query: 136 IGKRKYNLLRRRQIKAETEAWEKMAEEYKELEREMCEKKLAPNLPYVKTLFLGWFEPLKQ 195
           +G +K+ +L++RQ+K ETE WE+ A E +E+  +MCE+KLAPNLPY+K+LFLGWFEP++ 
Sbjct: 127 MGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRN 186

Query: 196 AIEKEQKKQQTKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMV-AQQDGCVQVVQAAVQ 255
           AI+ +    + KK K  +AP +E L ADKMAVI M+KMMGLLM  A+  G V++V AA Q
Sbjct: 187 AIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQ 246

Query: 256 IGGAIEQEVRIQSLLEKARSNQRTKVPGDAQC-------LSKEKEVLRKRVNGLIRRRRL 315
           IG A+EQEVRI S L+K      T    + +        ++KE E  RK+V  L+ + +L
Sbjct: 247 IGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEKNKL 306

Query: 316 KEVQKLLKK-EEFKAWGRDTQAKLGSCLIQLLIESAFVQPPVSQSPDSPPDIRPAFWHSF 375
           ++V+ L++K + FK WG++ Q K+G+ LIQLL+E+A++QPP  Q  D PPDIRPAF  +F
Sbjct: 307 RQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNF 366

Query: 376 KPVAKTPGQKLVKKYGVIECDPIVLAGLDRT-------AKQMLIPYIPMLVPPKKWKGYD 435
           + V      K  ++YG IECDP+VL GLD++       A+ M+IPY+PML+PP+ W GYD
Sbjct: 367 RTVT-LENTKTSRRYGCIECDPLVLKGLDKSVSRIVDYARHMVIPYLPMLIPPQNWTGYD 426

Query: 436 KGGHLFLPSYVMRTHGSSRQQEAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESI 495
           +G H FLPSYVMRTHG+ +Q+  MK    +Q++ V+EALD LG+TKW++N++VLS+V+ I
Sbjct: 427 QGAHFFLPSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTKWKINKKVLSLVDRI 486

Query: 496 WAQGGNAAGLVDRKDVPIPEKP-LGDLTKWKQSMWKAKKI---NQELHSQRCDVELKLSV 555
           WA GG   GLVDR+DVPIPE+P   D  K+K   W++KK    N E HSQRCD+ELKL V
Sbjct: 487 WANGGRIGGLVDREDVPIPEEPEREDQEKFKNWRWESKKAIKQNNERHSQRCDIELKLEV 546

Query: 556 ARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLYWLKIH 615
           ARKMKDEEGFYYPHN+DFRGRAYP+HP+LNHL SDLCRG+LEF EG+PLGKSGL WLKIH
Sbjct: 547 ARKMKDEEGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIH 606

Query: 616 LANLYAGGVEKLSYDRRLAFVDDHLDSIFDSASNPVHGDRWWLAAEDPFQCLAACINLSE 675
           +ANLYAGGV+KL+Y+ R+AF + HL+ IFDS+  P+ G RWWL AEDPFQCLAACINLSE
Sbjct: 607 IANLYAGGVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAEDPFQCLAACINLSE 666

Query: 676 ALRSSSP---------HTDGSCNGLQHYAALGRDTFEAAAVNLVAGDKPADVYSEIAARV 735
           ALRS  P         H DGSCNGLQHYAALGRD   A AVNLV G+KPADVY+EIAARV
Sbjct: 667 ALRSPFPEAAISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTGEKPADVYTEIAARV 726

Query: 736 HNIMIRDGNQDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKKRLGEK 795
             IM +D  +DP T PNA  AK+++DQVDRKLVKQTVMTSVYGVT+ GAR+QIKKRL E+
Sbjct: 727 LKIMQQDAEEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSGARDQIKKRLKER 786

Query: 796 GLISDDRLLFQAACYAAKVTLAALGEIFGAARGIMSWLGDCAKVIAADNQPVRWTTPLGL 855
           G   DD L F A+CYAAK+TL AL E+F AAR I SW GDCAK+IA++N  V WTTPLGL
Sbjct: 787 GTFEDDSLTFHASCYAAKITLKALEEMFEAARAIKSWFGDCAKIIASENNAVCWTTPLGL 846

Query: 856 PVVQPYYRSERHLVRTSLQVLALQREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACR 915
           PVVQPY +  RHLV+T+LQVL L RE + V  R+Q TAF PNF+HSLDGSHMM+TA+AC 
Sbjct: 847 PVVQPYRKPGRHLVKTTLQVLTLSRETDKVMARRQMTAFAPNFIHSLDGSHMMMTAVACN 906

Query: 916 DAGLRFAGVHDSFWTHACDVDQMNLILREKFVELYSMP----LLEGFETTYPGLTFPPLP 961
            AGL FAGVHDSFWTHACDVD MN ILREKFVELY  P    LLE F+ ++P ++FPPLP
Sbjct: 907 RAGLSFAGVHDSFWTHACDVDVMNTILREKFVELYEKPILENLLESFQKSFPDISFPPLP 966

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g08380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P69243	0.0e+00	70.86	DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RP...	[more]
P69242	0.0e+00	70.86	DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=...	[more]
Q8L6J1	0.0e+00	70.34	DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RP...	[more]
O24600	0.0e+00	72.86	DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q8L6J3	0.0e+00	64.97	DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum...	[more]

BLAST of Cp4.1LG11g08380 vs. NCBI nr


Match Name	Identity	Description
XP_023546565.1	98.66	DNA-directed RNA polymerase 3, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022946197.1	97.02	DNA-directed RNA polymerase 3, chloroplastic-like [Cucurbita moschata]	[more]
XP_022999624.1	96.60	DNA-directed RNA polymerase 3, chloroplastic-like [Cucurbita maxima]	[more]
KAG6599139.1	96.20	DNA-directed RNA polymerase 3, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
KAG7030081.1	88.83	DNA-directed RNA polymerase 3, chloroplastic [Cucurbita argyrosperma subsp. argy...	[more]

BLAST of Cp4.1LG11g08380 vs. ExPASy TrEMBL


Match Name	Identity	Description
A0A6J1G332	97.02	DNA-directed RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111450352 PE=3 S...	[more]
A0A6J1KHL7	96.60	DNA-directed RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111493929 PE=3 SV=...	[more]
A0A6J1E061	89.23	DNA-directed RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111024704 PE=3 ...	[more]
A0A1S3BU26	88.05	DNA-directed RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103493541 PE=3 SV=1	[more]
A0A0A0LH38	87.15	DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_2G036610 PE=3 SV=1	[more]

BLAST of Cp4.1LG11g08380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24120.1	0.0e+00	72.86	DNA/RNA polymerases superfamily protein	[more]
AT2G24120.2	0.0e+00	72.43	DNA/RNA polymerases superfamily protein	[more]
AT5G15700.1	6.4e-310	61.65	DNA/RNA polymerases superfamily protein	[more]
AT1G68990.1	1.8e-309	61.69	male gametophyte defective 3	[more]
AT1G68990.2	2.3e-307	61.19	male gametophyte defective 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 284..304
None	No IPR available	COILS	Coil	Coil	coord: 146..169
None	No IPR available	GENE3D	1.10.150.20		coord: 683..871 e-value: 1.3E-61 score: 210.1
None	No IPR available	GENE3D	1.10.287.280		coord: 582..660 e-value: 5.6E-27 score: 95.3
None	No IPR available	PANTHER	PTHR10102:SF14	DNA-DIRECTED RNA POLYMERASE	coord: 103..960
IPR029262	DNA-directed RNA polymerase, N-terminal	SMART	SM01311	RPOL_N_2	coord: 146..463 e-value: 6.4E-114 score: 394.4
IPR029262	DNA-directed RNA polymerase, N-terminal	PFAM	PF14700	RPOL_N	coord: 147..463 e-value: 1.8E-76 score: 257.7
IPR024075	DNA-directed RNA polymerase, helix hairpin domain superfamily	GENE3D	1.10.287.260		coord: 464..542 e-value: 4.5E-8 score: 35.3
IPR037159	DNA-directed RNA polymerase, N-terminal domain superfamily	GENE3D	1.10.1320.10		coord: 122..461 e-value: 6.6E-74 score: 250.9
IPR002092	DNA-directed RNA polymerase, phage-type	PFAM	PF00940	RNA_pol	coord: 582..960 e-value: 2.0E-139 score: 465.2
IPR002092	DNA-directed RNA polymerase, phage-type	PANTHER	PTHR10102	DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL	coord: 103..960
IPR002092	DNA-directed RNA polymerase, phage-type	PROSITE	PS00489	RNA_POL_PHAGE_2	coord: 734..748
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 130..960

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g08380.1	Cp4.1LG11g08380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006390	mitochondrial transcription
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0034245	mitochondrial DNA-directed RNA polymerase complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity