Cp4.1LG11g06850 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g06850
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RNA-binding protein
Location	Cp4.1LG11: 4743269 .. 4750158 (+)
RNA-Seq Expression	Cp4.1LG11g06850
Synteny	Cp4.1LG11g06850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACACTTTTCCAGTGCGCTACCAGGCCAAGCTTGTGACAATCGGAGCATTTTCAAGACCTAATTTTGAAGCCATTTCAAGTTCTTACTGCTCTTGGCCATGGCGGGACCTTCCTCGGCTCCTTCAGCACCTTCTTCCTCATCAGGTTCCCAATTTACGTATTCAAACGGTTCCTACTTTCCTTTACCTTTCCATCTCCAGCAGTCTGCTCCGGCACCGGCAGGCCCCCAGTATCCCTCTCCCTATGTCGCTGCTCCAGGTCCTCCAGCAGTTCCGCTCCCCGTCACATCTGTTTATCCGGCTCCTGCTCCCGCTGCCTATACTCTCCCTCAATACCAGCAGGTCGCATAACATGCATACGATTTTAATTTTTACTGCGGAGTTCTGGTTTTGTTCTATTTTTGCTATGGTTTAGGGAAAATTATTATGGAGCTTGACGTTTCTGATGGATAAGGGAATATTTTTTGGTTCAATTTATGGCTTTAGCATGCTTGTAACATTTTTCCCCCTGTTTTACCTACTATGAACAGGCTCAACAATTGTTTCAAAGGGATGCCCAAACGATAACACCGGAAGCTCTCGAGAGTGTTAAAGCTGCGCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAGGCTGCCGGGCAATCTTGGGAGGATCCAACACTTGCTGAGTGGCCTGAAAGTATGCATTATTTACGTTCTTTAATTTCACGTATTTGCAATCATTGGGCGTGCTGTCATCTCTAGGAATAATTTTAATTGTTATGGGCCTCTGATATCAGCTTGAACCGATGGATGTTTCTTTTAGTTACTACGCGTATTACATAGTAACCTCGGCAAATTTCAAGCAAGGACTGGATACTTGGCTTTGGACTTTAGATAATTTCTGTAATGCACCACGAGTGGTTGGGTTTTCCTTTATGTAATTTTATGAATCAATAAAATAGTTTCTTGTTCCTCTCTGGAAAAAAGTATAACAAAATTAAATACAATAAAACAAAAGATCTTTTTGGCTAAATGACTTTGAATATTTCTTTAGGAGGTAATGAGCCTGGAGAAATAAGGTTTTTGCTGTTATAATGGAAATAAGGGAGATAGATGGTTTTCCAAGAAGCCTAAGGAGCCAATGGAAAAGAATAAAGAGGCTGAAACCAAGGTTTGAAGAATTCACCTCTAAGATAATTGGTGATGGGAGGGACATCGAATTACAAAGGTAGCAAGGCTTATGTTCATACCTAGGAAGTATAAACACTCCATTTTTTTGCAGAGTATCGGACATCTATCATACATGGACATGCTTGAACACACCTGACAATTGAAAAAAGTCTAATTGATAAGTACTATAAATGTTGGATTTACAAAACTAGAGGTCCTAGGATCCTTGCAAATATTGACAAATAAGGCTACCTTATCAAATAGATTCCAACCAAGAGCTTAGTTAGAAGATGAAACTCTTGGATCTAACATAGAATCTAGGATGGTTACTCCTAGACAACTCACCCTATAATTAGATTGATTAAAGCTAATCCAAAGAATTGATTAAACTTCAAACACAGCAAGATTTGAAAAAACCAGCACCAAGATGGGTTTGAGAAACACAAGTTTCTTTGTTTGGTTGCAAAAAAGTCTTCCAAATACAAAGTATTACATGCCCTTAAATACGCCCAAATGGCCGTTCAAGTTCCCAAGAATCAAGTCCTTCAAAGACAAATAAATGATAATTGGAGAAGATAAAACCTAGGAAATGAAGCTCAATTGCACAACAATTGAGAAGTCTAAATGTGGAACAAAAAAATGTAGAAATGTTTTAAATTGTCTTCAATATCTATGGTAGGATCCACTTGACTTGATGAGAACGTTTGACAAGTTTTAACATCATAAACTCTCAGGAGGTGCAATTTGGAAAGGCATCTCTTCACAGGTTCTACGTAGTTTTTTTTTGTCCGTTGTGCCATCTTCCAAACTACACTACTTTTGCATGCCATCTTTACTTCATTCACTTTTTGACTTGTTGAAATAACGTTATGAAGAAATCAGGGTTCAACATTCGTTCTCTCCTTGTGCATTAGCTAGTTTTTGAAGATACAATGTAGAAGCCTTTTGATTTTTTTTGCCTTGTTCATTGTAATAGCTCCTTCAGGTACAAGTAATGGATCGAAGGTTGGATTCACATCTCCAATTATTCAATATTTTAATTTCTTGATGTAGTTCGAAAAAGCAAGTATAATAAAGTACAACATTTGTTGGATTTGAAAGCCCAATACCCACGGTTTGCCCACTTAAAAAAAATACCTAAATTTAATATGTCAAAAATAAGGAGAGCAATTCCACTTGTTTGATCCTATTTTCAAGTTTATTCCATAAACCTTATTGAAAACTCAATCGTTTTTGGCTCAGTGTGGGAAACCCCGATTATTAGGGGGGAAAAAATCAACTGTTTTTTGCTCCAGTGGAGGAGAAAATAGTCTCGACATATGCAAGTGAGGCAATCTCCCATGCTTTAGGGGGGGTGGACTTATCCTCGCAAATGCTTTCCTTTCTAGTTTCCCAGTCATCATCTCTCTATTTTTTAATGCCATAGGAAGGATTTTTTCATGATTTCTTTTGGACAGGAGTAGCGAAAGAATATGAAAACATTCTAGTAACTTGGAAAAACATCAACCTACTTCCGAGATGGGGGTGGAAATTCATGGAAGAAAATAATGCCCTATGGAAGGATGTAATTGCCAACAATTACTCTGGAGGAATAGATTCCAAAGCCGAATAGCCATGAGCCAAGCAAAGGTCCTTGGAAGCAGGTAATTGCCAACAATTATGGTTGGATTGTTCCTTTTAGGAGTTTGACCGTTGATGAAATTCTTGAGTGGATCAAGCTCTACAGCCTCGTTTATATACAATGTCCTTCTCATGTAGAAGATCCTCTCTCTTGGACCCTCAAAAGAGATGGTTGATTTTCGGTTAATTCCTTAACTTTTGAGCTAAGCACTCATCAGGCCCTGTCAATATTAATCCATCAAAGGTGATTTGGGTGGCTAAAGTCCCTAAGAGGAAGTGAAAGCCTTCATATGGGTCTTTGTCCGAGGGAATTTAAACACAAGGGATGTCTACAAAGAAGACGACTGAATAATCCATGCCCCCAAATTGGTGCATGATGTGCAGATCAAATGAAGAAAATCGGCATCGTCTTTTCTTCCTTTGCTCTTGGGCAAACTCCTTACAGGTTAGATTATTGAACTTTTTGGGGAGCTGGTGTGTCCTGAAAGAAATGATGGGGTCTATTTTTGCTTATTTTTGGAACTCCTTTCAGGGATAAAGGTCGTATTTTATGGTTCAGACTTTGTGGAAACTGTGGCGTGAGAGGAACTAGAAGGGCTTTGTAGAGAAGACGACTAACCTTTACAAGCTTTGTGACTACATCAAACTCTTTGCATCCATCTGTGTTCTCATTCAGAGTCTTTTTGTAATTATGATCTTGTGCATATTTCAGCTGATTGGGAGTCCTTTTTTGTGACCCTTTGGCCTAGTAGGGATAATTCATCTACCTTTTGTACTACTTCCTCCCAATCAATATATTTTTTGGTTTCTTATTAAAAAAAGGAGAAGAAAATACACCCTTATTGGATAATGAATATTATTGGTTGTCTATCACTGTTTTGATGAATTTAATTTTGTTTTGATGTTGACTCTTAGATATTATATTTACTTTTATATTATTAAGAATTTTGAAATATTAGTGGTCATAGGCTTGCGTGTATGCACATAATTACAAAGAAAAAAAAAAAAAAAAACTATCATAACCCCAATATATCATGTCCTAGTTTTTTATCATTTTGCCGTGTTAGTCATTTTATTGGTGGCATATTTCATGTTTCTTAAATAGTTACTGATCTGCCGTACTCTTGATTCTTATATTTTTCCACCGATTTTGATGGATTTCCTTTTCCTGTTGGCTTTGTAGAAATAATGACTACTATAGAGTAGAAATTGAATTAGTGCATGTAATGTTCCTATAGCTGGAAGCATCTCTTACTGAGGAAAATTTTCTGTTGTTGCAGATGATTACCGTCTATTTTGTGGAGATCTTGGCAATGAAGTGAATGATGATGTGCTCTCTAAAGCATTCTCACGATTTCCTTCATTTAACATGGCTAGAGTAAGTTTATTGAGTCCAATATTCTACCTAATTCATTTTTATTTTCAATTTTTGTTCTTGGCATTCTGCATGATGGTTAGTTTCCTTGAAAGTGTTCGGTCTGTTTAAAAGGTCGCAATGCATCTATAGGTACGTCTTGTTTGTACATTTACATGTGATTCTGATTGCATTTGAGGCTTCTGATATGTCCACAGGAATCTGTTCCTTGATTGTAATATATTTTTTATATTTTTTAAGGTTTAAGTTCTATTTTGGTCGAAAAAGCTTTTAAATTATTTTGTTTGGCTTCTAAACTTGTAAATATTCTGTTTTGGTCACTAAGCTATCAACGTTATCCCTGAAACTATGCATAATAAACTAATTTAGTCATTTCTGTTGATTCTTTTTGTTGATCATTTGGAGTTTGCTAACCTGCTTTGTGTAACCCCAAAAACATACCTAGTAGACAGACACTCACCAGATTTAGGAACAAAAGATGTGTCGAATCAAGTTTCTGTTAAATGATTTTTATAAATTAAAGCAAAACTAATGACTGAAAATATATTTTTTATGCAAAGCTGACGGACAAAAATAGAATCATCTGGAAGACAAATGAAAAAAGTATAACATCTCCAGAAATAAAATAGTACTAAAACCTGTTTTTATGTTTCTTAAAAATTATTTGAGGTTAAGAATTTTCTTTAAGAAAGATGCGATCATCTGATTGGGAGTTATGCAGCTGGAACCTCTTTATGGAGCTTGTATCCCTTAGAATTTACTAAGTTCATAGACTAGATTGAGTTGTAACATGGTTGGGTCATTTAAACTTGCCAGAGACAGGTTAGCTCTCGAGCTTTTAAAAGTGGTTATTGTTTTCCTTGGTATTTTCACTCTCTTACTGCTTGTGTGGGGGTATGAGGAAAGTCCCTTAAAATTTTGTGCACGAAACTATCCATGAAATTTTCAACAGAGGGACTTGAACACTGTGTGAGCTCTTGACTTTTAGTAATGATCGGAGATATTTTTCTTTTGGTATTCACTCACGAATCTTGAAGATTCGCTGTTAAAGTGATTGGCCCTGTGATTTCCCTCCTTTGTGGTCATTGTATAGTCATGCCATTAAACATAGGCTTTACAACCATTTCATCTGGTATTGGGTCTTGTCATGGAAGATTTATTTTATTTGTGTTATTGTTGCTCATGCATATTTTATGGTTGAACTCGTAATTTAATTCTCACCAACATTTGTAGTTTTTGAACCATTGTCAACTTCAAGGACATTGCCCAATTGTTTATAAGGATTTCTGTGGCATAATTTTTTGGAAGTGGTTTGGACCAATTGATGCACTTTTATAAGAAACAATCTCAACCTTGTATCTTGAAAAATATACTATTTCATGACTTTGCGGATTGACCTAAAATATTTTGATACCCTATTTATGGTTTATTTTCTACTTACCAATGGATCTATATGCATATAATTTTGTTTAGGTTGTTAGAGATAAGCGAACTGGTAAGACCAAGGGTTATGGATTTGTTAGCTTCTCCAATCCTACGGACCTTGCTGCAGCACTTAAGGAAATGAATGGTAATATGCTGATTTTAGTTTTATATGGGTTCTGCAGTTCGTTATTTCATCTCTCTGTTGGACTTGTGCTTCCTGTTCAATTCTCATGACATGTACTGTGTAATATAATAAAACCTTCCTCGTTGGTGGAACGCTATATGATAACAAGTTTAATTAGGTTGTCATTCTTTTTACGAGAAACATTTTTTTTTTTTTTTTTTTTTTTAGNACATTTTGAAGAAAGTTGTAAGAAATTAAAATGTAGGTTTTGAAAAAACAAGTGTTTTTCTGCATTCACAATTTGGTCAGGATTTTAAAGTATTTCTATAACGTACAATACCGAATTACTTTCTAAAAGAACTAAATAAATTAAAGGATAATCTTTAGATAGACTCCAATTTTTTGTTCTTATGATCGCCTCCTGTGGAGGAAATTTCCTATGAAGTAGACCCATCTGTATGAACTAACGTGGTCAAGAATCTTATGGTCTAATCCTCAAGCTTATGTGTCTTCTAGGGTGTGTGTGGTAATGGTTGGTAGTTTGACATTCTTTAATGCCTTGTGTTCTCTACAAAATCTCTGAAACTATTCTTATGTGCTTAGACCCTTCTTGATTGCAGGCAAGTATGTCGGAAATAGGCCGATAAAATTAAGAAAGAGCAATTGGAAGGAGAGGACAGACTATGATGCCCTGGAAAGACACAAGGTAAATAACGTTTGGTGTTCGTATGCACCGTTACTTCTTGCTTATTTTAAAGTTCGACGTTTCAGTTTTTTTGATAAACTAATTTGATGACAGAACCACACTCAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAGAGGTCGTTCACATTCTTGCTGTCTTTGTTTACTCCTCGAGTATAATCGTCGATCACTCAAGTGATCGGTACCGGATGTCTAACCAGTGTTTCAGGAATGCCGTGAAGTTAGTATCTGAGTGAGCTTTCTGTTCTCTGCTGCTGCAACTCTTTTTTAAATGAAGTGATTGTGCACTAGAGAAGATGTTTACTTGGAAGGAATCGATCTTGTAAAGTGTTGTGCATTCTCCATTCTCTTTGGCTATTTAATGAAGGAATGGAAATCAACAGTCTTTCACTGTTCTTGACCACTGATCTGACATTACATCTTATTT

mRNA sequence

GACACTTTTCCAGTGCGCTACCAGGCCAAGCTTGTGACAATCGGAGCATTTTCAAGACCTAATTTTGAAGCCATTTCAAGTTCTTACTGCTCTTGGCCATGGCGGGACCTTCCTCGGCTCCTTCAGCACCTTCTTCCTCATCAGGTTCCCAATTTACGTATTCAAACGGTTCCTACTTTCCTTTACCTTTCCATCTCCAGCAGTCTGCTCCGGCACCGGCAGGCCCCCAGTATCCCTCTCCCTATGTCGCTGCTCCAGGTCCTCCAGCAGTTCCGCTCCCCGTCACATCTGTTTATCCGGCTCCTGCTCCCGCTGCCTATACTCTCCCTCAATACCAGCAGGCTCAACAATTGTTTCAAAGGGATGCCCAAACGATAACACCGGAAGCTCTCGAGAGTGTTAAAGCTGCGCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAGGCTGCCGGGCAATCTTGGGAGGATCCAACACTTGCTGAGTGGCCTGAAAATGATTACCGTCTATTTTGTGGAGATCTTGGCAATGAAGTGAATGATGATGTGCTCTCTAAAGCATTCTCACGATTTCCTTCATTTAACATGGCTAGAGTTGTTAGAGATAAGCGAACTGGTAAGACCAAGGGTTATGGATTTGTTAGCTTCTCCAATCCTACGGACCTTGCTGCAGCACTTAAGGAAATGAATGGCAAGTATGTCGGAAATAGGCCGATAAAATTAAGAAAGAGCAATTGGAAGGAGAGGACAGACTATGATGCCCTGGAAAGACACAAGAACCACACTCAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAGAGGTCGTTCACATTCTTGCTGTCTTTGTTTACTCCTCGAGTATAATCGTCGATCACTCAAGTGATCGGTACCGGATGTCTAACCAGTGTTTCAGGAATGCCGTGAAGTTAGTATCTGAGTGAGCTTTCTGTTCTCTGCTGCTGCAACTCTTTTTTAAATGAAGTGATTGTGCACTAGAGAAGATGTTTACTTGGAAGGAATCGATCTTGTAAAGTGTTGTGCATTCTCCATTCTCTTTGGCTATTTAATGAAGGAATGGAAATCAACAGTCTTTCACTGTTCTTGACCACTGATCTGACATTACATCTTATTT

Coding sequence (CDS)

ATGGCGGGACCTTCCTCGGCTCCTTCAGCACCTTCTTCCTCATCAGGTTCCCAATTTACGTATTCAAACGGTTCCTACTTTCCTTTACCTTTCCATCTCCAGCAGTCTGCTCCGGCACCGGCAGGCCCCCAGTATCCCTCTCCCTATGTCGCTGCTCCAGGTCCTCCAGCAGTTCCGCTCCCCGTCACATCTGTTTATCCGGCTCCTGCTCCCGCTGCCTATACTCTCCCTCAATACCAGCAGGCTCAACAATTGTTTCAAAGGGATGCCCAAACGATAACACCGGAAGCTCTCGAGAGTGTTAAAGCTGCGCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAGGCTGCCGGGCAATCTTGGGAGGATCCAACACTTGCTGAGTGGCCTGAAAATGATTACCGTCTATTTTGTGGAGATCTTGGCAATGAAGTGAATGATGATGTGCTCTCTAAAGCATTCTCACGATTTCCTTCATTTAACATGGCTAGAGTTGTTAGAGATAAGCGAACTGGTAAGACCAAGGGTTATGGATTTGTTAGCTTCTCCAATCCTACGGACCTTGCTGCAGCACTTAAGGAAATGAATGGCAAGTATGTCGGAAATAGGCCGATAAAATTAAGAAAGAGCAATTGGAAGGAGAGGACAGACTATGATGCCCTGGAAAGACACAAGAACCACACTCAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAG

Protein sequence

MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPLPVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKKSKLPKKSILHK

Homology

[Close]

BLAST of Cp4.1LG11g06850 vs. ExPASy Swiss-Prot
Match: Q66KL9 (RNA-binding protein 42 OS=Xenopus tropicalis OX=8364 GN=rbm42 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.4e-40
Identity = 101/227 (44.49%), Postives = 130/227 (57.27%), Query Frame = 0


Query: 38  PAPAGPQYPSPYVAAPGPPAVPLPVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEA 97
           PAP GP  P P    P  P +   V       AP  YT P  ++ ++      + + P  
Sbjct: 173 PAPVGPLPPPPRPVVPSAPKMNPTVIQA----APTVYTAPPVRKPEE------EIVEPPI 232

Query: 98  LESVKAALASSE------------------IEHKAETKKKAIPRK-------AAGQSWED 157
           L   K  L+  E                  +E   E KKK  P K       AAG SWED
Sbjct: 233 LPDEKETLSFEEAVIGPSMPEMEPVQPEVVLEPVQEDKKKTKPEKLKRCIRTAAGTSWED 292

Query: 158 PTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFS 217
            +L EW  +D+R+FCGDLGNEVNDD+L++AFSR+PSF  A+V+RDKRTGKTKGYGFVSF 
Sbjct: 293 QSLLEWESDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFK 352

Query: 218 NPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQK 240
           +P D   A++EMNGKYVG+RPIKLRKS WK+R + D + + +   +K
Sbjct: 353 DPNDYVRAMREMNGKYVGSRPIKLRKSQWKDR-NMDVVRKKQREKKK 388

[Close]

BLAST of Cp4.1LG11g06850 vs. ExPASy Swiss-Prot
Match: Q0P5L0 (RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 5.4e-40
Identity = 100/207 (48.31%), Postives = 131/207 (63.29%), Query Frame = 0


Query: 39  APAGPQYPSPYVAAPGPPAVPLPVTSVYPAPAPAAYTLPQYQQAQQLFQ-----RDAQTI 98
           APAGP    P  + P   A+PLP     P P      L    +  +L       R  +  
Sbjct: 241 APAGPAVIGP--SLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPE 300

Query: 99  TPEALESVKAALASSEIEHKAETKK-KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGN 158
            P  L +++     SE + K + +K K   R AAG SWEDP+L EW  +D+R+FCGDLGN
Sbjct: 301 PPPGLMALEVPEPLSEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGN 360

Query: 159 EVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNR 218
           EVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG+R
Sbjct: 361 EVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSR 420

Query: 219 PIKLRKSNWKERTDYDALERHKNHTQK 240
           PIKLRKS WK+R + D + + +   +K
Sbjct: 421 PIKLRKSMWKDR-NLDVVRKKQKEKKK 444

[Close]

BLAST of Cp4.1LG11g06850 vs. ExPASy Swiss-Prot
Match: Q9BTD8 (RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 9.3e-40
Identity = 103/209 (49.28%), Postives = 128/209 (61.24%), Query Frame = 0


Query: 39  APAGPQYPSPYVAAPGPPAVPLPVTSVYPAPAPAAY-TLPQYQQAQQLFQRDAQTITPEA 98
           APAGP    P  + P   A+PLP     P P       LP  +  + L  R      P  
Sbjct: 273 APAGPAVIGP--SLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRP--RPPR 332

Query: 99  LESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLAEWPENDYRLFCGDL 158
            E     +A    E   E KKK  P K       AAG SWEDP+L EW  +D+R+FCGDL
Sbjct: 333 PEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDL 392

Query: 159 GNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVG 218
           GNEVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG
Sbjct: 393 GNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVG 452

Query: 219 NRPIKLRKSNWKERTDYDALERHKNHTQK 240
           +RPIKLRKS WK+R + D + + +   +K
Sbjct: 453 SRPIKLRKSMWKDR-NLDVVRKKQKEKKK 476

[Close]

BLAST of Cp4.1LG11g06850 vs. ExPASy Swiss-Prot
Match: Q91V81 (RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=2)

HSP 1 Score: 165.2 bits (417), Expect = 9.3e-40
Identity = 103/209 (49.28%), Postives = 128/209 (61.24%), Query Frame = 0


Query: 39  APAGPQYPSPYVAAPGPPAVPLPVTSVYPAPAPAAY-TLPQYQQAQQLFQRDAQTITPEA 98
           APAGP    P  + P   A+PLP     P P       LP  +  + L  R      P  
Sbjct: 271 APAGPAVIGP--SLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRP--RPPR 330

Query: 99  LESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLAEWPENDYRLFCGDL 158
            E     +A    E   E KKK  P K       AAG SWEDP+L EW  +D+R+FCGDL
Sbjct: 331 PEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDL 390

Query: 159 GNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVG 218
           GNEVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG
Sbjct: 391 GNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVG 450

Query: 219 NRPIKLRKSNWKERTDYDALERHKNHTQK 240
           +RPIKLRKS WK+R + D + + +   +K
Sbjct: 451 SRPIKLRKSMWKDR-NLDVVRKKQKEKKK 474

[Close]

BLAST of Cp4.1LG11g06850 vs. ExPASy Swiss-Prot
Match: Q6AXT7 (RNA-binding protein 42 OS=Rattus norvegicus OX=10116 GN=Rbm42 PE=1 SV=2)

HSP 1 Score: 165.2 bits (417), Expect = 9.3e-40
Identity = 103/209 (49.28%), Postives = 128/209 (61.24%), Query Frame = 0


Query: 39  APAGPQYPSPYVAAPGPPAVPLPVTSVYPAPAPAAY-TLPQYQQAQQLFQRDAQTITPEA 98
           APAGP    P  + P   A+PLP     P P       LP  +  + L  R      P  
Sbjct: 271 APAGPAVIGP--SLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRP--RPPR 330

Query: 99  LESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLAEWPENDYRLFCGDL 158
            E     +A    E   E KKK  P K       AAG SWEDP+L EW  +D+R+FCGDL
Sbjct: 331 PEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDL 390

Query: 159 GNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVG 218
           GNEVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG
Sbjct: 391 GNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVG 450

Query: 219 NRPIKLRKSNWKERTDYDALERHKNHTQK 240
           +RPIKLRKS WK+R + D + + +   +K
Sbjct: 451 SRPIKLRKSMWKDR-NLDVVRKKQKEKKK 474

[Close]

BLAST of Cp4.1LG11g06850 vs. NCBI nr
Match: XP_023545858.1 (RNA-binding protein 42-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 484 bits (1246), Expect = 3.76e-172
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0


Query: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL
Sbjct: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60

Query: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120
           PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA
Sbjct: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120

Query: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180
           IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT
Sbjct: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180

Query: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240
           GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK
Sbjct: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240

Query: 241 SKLPKKSILHK 251
           SKLPKKSILHK
Sbjct: 241 SKLPKKSILHK 251

[Close]

BLAST of Cp4.1LG11g06850 vs. NCBI nr
Match: KAG7029895.1 (RNA-binding protein 42 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 483 bits (1243), Expect = 1.08e-171
Identity = 250/251 (99.60%), Postives = 251/251 (100.00%), Query Frame = 0


Query: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQ+APAPAGPQYPSPYVAAPGPPAVPL
Sbjct: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQTAPAPAGPQYPSPYVAAPGPPAVPL 60

Query: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120
           PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA
Sbjct: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120

Query: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180
           IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT
Sbjct: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180

Query: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240
           GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK
Sbjct: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240

Query: 241 SKLPKKSILHK 251
           SKLPKKSILHK
Sbjct: 241 SKLPKKSILHK 251

[Close]

BLAST of Cp4.1LG11g06850 vs. NCBI nr
Match: KAG6598941.1 (RNA-binding protein 42, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 483 bits (1242), Expect = 1.53e-171
Identity = 250/251 (99.60%), Postives = 250/251 (99.60%), Query Frame = 0


Query: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           M GPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL
Sbjct: 1   MGGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60

Query: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120
           PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA
Sbjct: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120

Query: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180
           IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT
Sbjct: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180

Query: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240
           GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK
Sbjct: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240

Query: 241 SKLPKKSILHK 251
           SKLPKKSILHK
Sbjct: 241 SKLPKKSILHK 251

[Close]

BLAST of Cp4.1LG11g06850 vs. NCBI nr
Match: XP_022929768.1 (RNA-binding protein 42-like [Cucurbita moschata])

HSP 1 Score: 483 bits (1242), Expect = 1.53e-171
Identity = 250/251 (99.60%), Postives = 250/251 (99.60%), Query Frame = 0


Query: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           MAGPSS PSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL
Sbjct: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60

Query: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120
           PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA
Sbjct: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120

Query: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180
           IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT
Sbjct: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180

Query: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240
           GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK
Sbjct: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240

Query: 241 SKLPKKSILHK 251
           SKLPKKSILHK
Sbjct: 241 SKLPKKSILHK 251

[Close]

BLAST of Cp4.1LG11g06850 vs. NCBI nr
Match: XP_022997003.1 (RNA-binding protein 42-like [Cucurbita maxima])

HSP 1 Score: 481 bits (1238), Expect = 6.24e-171
Identity = 250/251 (99.60%), Postives = 250/251 (99.60%), Query Frame = 0


Query: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSA APAGPQYPSPYVAAPGPPAVPL
Sbjct: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSATAPAGPQYPSPYVAAPGPPAVPL 60

Query: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120
           PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA
Sbjct: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120

Query: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180
           IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT
Sbjct: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180

Query: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240
           GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK
Sbjct: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240

Query: 241 SKLPKKSILHK 251
           SKLPKKSILHK
Sbjct: 241 SKLPKKSILHK 251

[Close]

BLAST of Cp4.1LG11g06850 vs. ExPASy TrEMBL
Match: A0A6J1ET57 (RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111436257 PE=4 SV=1)

HSP 1 Score: 483 bits (1242), Expect = 7.42e-172
Identity = 250/251 (99.60%), Postives = 250/251 (99.60%), Query Frame = 0


Query: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           MAGPSS PSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL
Sbjct: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60

Query: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120
           PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA
Sbjct: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120

Query: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180
           IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT
Sbjct: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180

Query: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240
           GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK
Sbjct: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240

Query: 241 SKLPKKSILHK 251
           SKLPKKSILHK
Sbjct: 241 SKLPKKSILHK 251

[Close]

BLAST of Cp4.1LG11g06850 vs. ExPASy TrEMBL
Match: A0A6J1KCL6 (RNA-binding protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111492062 PE=4 SV=1)

HSP 1 Score: 481 bits (1238), Expect = 3.02e-171
Identity = 250/251 (99.60%), Postives = 250/251 (99.60%), Query Frame = 0


Query: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSA APAGPQYPSPYVAAPGPPAVPL
Sbjct: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSATAPAGPQYPSPYVAAPGPPAVPL 60

Query: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120
           PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA
Sbjct: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120

Query: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180
           IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT
Sbjct: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180

Query: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240
           GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK
Sbjct: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240

Query: 241 SKLPKKSILHK 251
           SKLPKKSILHK
Sbjct: 241 SKLPKKSILHK 251

[Close]

BLAST of Cp4.1LG11g06850 vs. ExPASy TrEMBL
Match: A0A1S4DU47 (LOW QUALITY PROTEIN: RNA-binding protein 42 OS=Cucumis melo OX=3656 GN=LOC103485881 PE=4 SV=1)

HSP 1 Score: 454 bits (1169), Expect = 1.07e-160
Identity = 239/253 (94.47%), Postives = 241/253 (95.26%), Query Frame = 0


Query: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           MAGPSSAPS+ SSSS SQFTYSNGSYFPLPFHLQQSAPAPA PQYPSPYVA PGPP VPL
Sbjct: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVPL 60

Query: 61  PVTSVYPAPAP--AAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PV  VYPAPAP  A YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQ 240
           RTGKTKGYGFVSFSNPTDLA ALKEMNGKYVGNRPIKLRKSNWKERTDY+AL RHKNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240

Query: 241 KKSKLPKKSILHK 251
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]

BLAST of Cp4.1LG11g06850 vs. ExPASy TrEMBL
Match: A0A0A0LH39 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G075290 PE=4 SV=1)

HSP 1 Score: 451 bits (1161), Expect = 1.77e-159
Identity = 238/253 (94.07%), Postives = 240/253 (94.86%), Query Frame = 0


Query: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           MAGPSSAPS+ SSSS SQFTYSNGSYFPLPFHLQQSAPAPA PQY SPYVA PGPP VPL
Sbjct: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYSSPYVAPPGPPPVPL 60

Query: 61  PVTSVYPAPAP--AAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PV  VYPAPAP  A YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQ 240
           RTGKTKGYGFVSFSNPTDLA ALKEMNGKYVGNRPIKLRKSNWKERTDY+AL RHKNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240

Query: 241 KKSKLPKKSILHK 251
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]

BLAST of Cp4.1LG11g06850 vs. ExPASy TrEMBL
Match: A0A6J1FBP0 (RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111443965 PE=4 SV=1)

HSP 1 Score: 448 bits (1153), Expect = 2.93e-158
Identity = 236/253 (93.28%), Postives = 240/253 (94.86%), Query Frame = 0


Query: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           MAGP SAPSA SSSSG+QFTYSNGSYFPLPFHLQQSAPA   PQYP+PYVAAP PPAVPL
Sbjct: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60

Query: 61  PVTSVYP--APAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PV SVYP  APAPAAY LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTL EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQ 240
           RTGKTKGYGFVSFSNPTDLA ALKEMNGKYVGNRPIKLRKSNWKERTDY+AL R+KNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQ 240

Query: 241 KKSKLPKKSILHK 251
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]

BLAST of Cp4.1LG11g06850 vs. TAIR 10
Match: AT3G04500.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 339.3 bits (869), Expect = 2.6e-93
Identity = 182/248 (73.39%), Postives = 199/248 (80.24%), Query Frame = 0


Query: 4   PSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPLPVT 63
           PSS  S  SSSS SQ+TY+  SY+  P+   Q   A   P  P+P  + PG    P PV 
Sbjct: 5   PSSGSS--SSSSSSQYTYAANSYYSAPYQPPQPYAAAPSPAVPAPVASIPGATVYPQPV- 64

Query: 64  SVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPR 123
                P PA Y  PQYQQA QLFQRDAQTITPEALE+VKAALASSE EHKAETKK+AIPR
Sbjct: 65  ----GPVPAVYAYPQYQQAHQLFQRDAQTITPEALENVKAALASSETEHKAETKKRAIPR 124

Query: 124 KAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKT 183
           KAAGQSWEDPTL+EWPENDYRLFCGDLGNEVNDDVLSKAF+RFP+FNMA+V+RDKRTGKT
Sbjct: 125 KAAGQSWEDPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKT 184

Query: 184 KGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKKSKL 243
           KGYGFVSF NP DLAAALKEMNGKYVGNRPIKLRKS+WKERTD +A ER K+H+ KK K 
Sbjct: 185 KGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLRKSSWKERTDQEAAERQKHHSNKKQKT 244

Query: 244 PKKSILHK 252
            KKSILHK
Sbjct: 245 VKKSILHK 245

[Close]

BLAST of Cp4.1LG11g06850 vs. TAIR 10
Match: AT3G14100.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 75.9 bits (185), Expect = 5.3e-14
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 143 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALK 202
           + +F GDL  EV D  L ++FS F S + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 144 FNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203

Query: 203 EMNGKYVGNRPIKLRKSNW 222
           EMNGK++ +R I   + NW
Sbjct: 204 EMNGKWLSSRQI---RCNW 219

[Close]

BLAST of Cp4.1LG11g06850 vs. TAIR 10
Match: AT1G17370.1 (oligouridylate binding protein 1B )

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-13
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 143 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALK 202
           + +F GDL  EV D +L   FS +P+ + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 139 FNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAID 198

Query: 203 EMNGKYVGNRPIKLRKSNW 222
           E+ GK++G+R I   + NW
Sbjct: 199 EITGKWLGSRQI---RCNW 214

[Close]

BLAST of Cp4.1LG11g06850 vs. TAIR 10
Match: AT1G17370.2 (oligouridylate binding protein 1B )

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-13
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 143 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALK 202
           + +F GDL  EV D +L   FS +P+ + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 139 FNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAID 198

Query: 203 EMNGKYVGNRPIKLRKSNW 222
           E+ GK++G+R I   + NW
Sbjct: 199 EITGKWLGSRQI---RCNW 214

[Close]

BLAST of Cp4.1LG11g06850 vs. TAIR 10
Match: AT3G19130.1 (RNA-binding protein 47B )

HSP 1 Score: 72.8 bits (177), Expect = 4.5e-13
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 142 DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAA 201
           D  +F GDL  +V D +L + FS R+PS   A+VV D  TG++KGYGFV F +  + + A
Sbjct: 201 DLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRA 260

Query: 202 LKEMNGKYVGNRPIKL 217
           L EMNG Y  NR +++
Sbjct: 261 LTEMNGAYCSNRQMRV 276

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g06850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q66KL9	1.4e-40	44.49	RNA-binding protein 42 OS=Xenopus tropicalis OX=8364 GN=rbm42 PE=2 SV=1	[more]
Q0P5L0	5.4e-40	48.31	RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1	[more]
Q9BTD8	9.3e-40	49.28	RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1	[more]
Q91V81	9.3e-40	49.28	RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=2	[more]
Q6AXT7	9.3e-40	49.28	RNA-binding protein 42 OS=Rattus norvegicus OX=10116 GN=Rbm42 PE=1 SV=2	[more]

BLAST of Cp4.1LG11g06850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545858.1	3.76e-172	100.00	RNA-binding protein 42-like [Cucurbita pepo subsp. pepo]	[more]
KAG7029895.1	1.08e-171	99.60	RNA-binding protein 42 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6598941.1	1.53e-171	99.60	RNA-binding protein 42, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022929768.1	1.53e-171	99.60	RNA-binding protein 42-like [Cucurbita moschata]	[more]
XP_022997003.1	6.24e-171	99.60	RNA-binding protein 42-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG11g06850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ET57	7.42e-172	99.60	RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111436257 PE=4 S...	[more]
A0A6J1KCL6	3.02e-171	99.60	RNA-binding protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111492062 PE=4 SV=...	[more]
A0A1S4DU47	1.07e-160	94.47	LOW QUALITY PROTEIN: RNA-binding protein 42 OS=Cucumis melo OX=3656 GN=LOC103485...	[more]
A0A0A0LH39	1.77e-159	94.07	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G075290 PE=4 SV...	[more]
A0A6J1FBP0	2.93e-158	93.28	RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111443965 PE=4 S...	[more]

BLAST of Cp4.1LG11g06850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04500.1	2.6e-93	73.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G14100.1	5.3e-14	45.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G17370.1	2.0e-13	43.04	oligouridylate binding protein 1B	[more]
AT1G17370.2	2.0e-13	43.04	oligouridylate binding protein 1B	[more]
AT3G19130.1	4.5e-13	46.05	RNA-binding protein 47B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 144..217 e-value: 5.1E-21 score: 85.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 145..215 e-value: 8.0E-19 score: 67.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 143..221 score: 16.346634
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 78..217 e-value: 3.6E-24 score: 87.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..251
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..251
None	No IPR available	PANTHER	PTHR47640:SF11	RNA-BINDING PROTEIN 42-LIKE	coord: 37..251
None	No IPR available	PANTHER	PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	coord: 37..251
IPR034215	RBM42, RNA recognition motif	CDD	cd12383	RRM_RBM42	coord: 137..219 e-value: 7.04088E-59 score: 179.341
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 126..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g06850.1	Cp4.1LG11g06850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0017069	snRNA binding
molecular_function	GO:0003676	nucleic acid binding