Cp4.1LG11g05810 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g05810
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	coiled-coil domain-containing protein 93 isoform X1
Location	Cp4.1LG11: 3445310 .. 3451976 (-)
RNA-Seq Expression	Cp4.1LG11g05810
Synteny	Cp4.1LG11g05810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTATTTTATTGGCTATTTTTGCCAATTTTCTTCGAATTTAGTTCAGCGATGTATCGACCTGCTTATGGGCCAGGCCCATTTAAGTCACGGCCCAGTACGAAGCGATGGTGCTCCGATCCATAGTTCTGCCCGCCGATCACCTGTAAGAAGAAGAGGATCCTCTTCTAAGCAGTTCATATAAAATTAGCAATTTTATTGACTTATCGGAGTTCCATTTTCAGGCGACATTGGCCTTTGCCATTCGATCAGTTTCGACGGCGTTCGCAAATCCGTGATTTCTTCATTCGAGAAGCTGGCTTCCGGCATTCTCTGCTGCATCAAACCGGAACAGGTGTGCATTATCAATTCGATGTCATCCCTCTCCTTTTATACCATTTCCATGCTGAAAGTGAGGGACGGAACTTTCTGATGAACTTCTCGAATCATAAATTAATTGTTAGCGTCGATTTTAGAGAATTGAATGAGTTTTAATTTGATCGGAGAATGACTTGTATATCGTTGTGATTCATGTACGATCATGTACGATTAATTACAGTGTCTTCCGTAGAGGTCGTATTTTCCTTCGTCCGGTTGCTTTCCATCCGCATCAGTGGTCCGTGTAATGTCTGAGGCGATCAAGAGCCAGGTACTTAGTCTTTGTATTGTATCAGTTGTGATGGTTAGGTTTGGTAAATATCATTTCTGTGTTAGGAACTTGGGCTTGGACTTGCGGCGTGTTTTTGCTGGTAGTATTGAGAGTTCTTAAAATAGTCTTGATGTTTTCAGTATGTTGTCTGATTTCATACTGCTGTGGCGCTCACTTACCGGAAATCACAGGGTACTTGCAGTGAGCGCTTGATTGAGGAAAACAAATGTTTACAATCCCTTCAGGTGGATTCCGACAATGGAGTTTCAATGGATATACTAAAGGAGGACGTGGATGAACTGGTCGGAGTTTTTAAAAATCATTTCCTTTTCCTTTTTTTCTTCCTTTTCAAGTGTATAATAGGATCTATCACGGCTTTTGTTTGAAGTCCTGAGTACTCAAGATCACTAAAAAGCGTATATTAGAATATAATTTATCAAGCATAATTATCAGTTTTTTCTCTTAAGAAATTTTTTCCCTTGATGAATTTCTTTCTCGTTATTTCCGGTATTTAGAACCAGAAGAAAGTTGCAGTGGTGAAGGACTTGCAATTTTTACAGGATAGAGTCAGTAAGGCGAATGCTAATCATGTGGTGCAGAATTTGATGTCATGCTTGAAGACTTTGGAGGTCTGCACCTTTGCTCTGCACTTACAGTCTTATTTTTTCGCTGAATAGTATCGTCCCTCTGCATTTCGTTTGTAGTTCTTGTGATTTTCTGTAGTGTCCTTNTTTACAGGATAGAGTCAGTAAGGCGAATGCTAATCATGTGGTGCAGAATTTGATGTCATGCTTGAAGACTTTGGAGGTCTGCACCTTTGCTCTGCACTTACAGTCTTATTTTTTCGCTGAATAGTATCGTCCCTCTGCATTTCGTTTGTAGTTCTTGTGATTTTCTGTAGTGTCCTTCTTTACAATTTTATTCTAAACCGGTTTTCTGTTCCTCCTAAGGGGGCTGAAGATTTTATATTTTCTCTGATTTAGTTGAAGAGTGCTAGTCACTGAAGGGACATCTCTTGGGAAAAGTTTCTCGAACATTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTTAATAACCATCTGGATAGAACTTTTTTTTGTTCCTCGCTCTCTGTTGACAGCTATCATATTGTTTCTAATACCATGCATTCTCACATGCAAGATGTATTTTACCAATTTCTTTTCTTGTGCTTTATCAGATTTGTGTTTTAAAGCTTTTGTTTCCAAACATCTTCCATACTTGAATTGGAACAGCATTCAGTGTAGGTTTTTTTTCTCATCCATATCTTTTTATTTGTATATGCCATCTATGATCACAATTTACCTCTGTGGCTCATCTAATATAAGAATTTTAAAAAATTGTGATGGAGGCGTGGGCTCCGACTTATGTCAGAAATTGATGCTACAAGGGGTTTGGCTTGAAAGTGTAGTCATTTTGAAAAGTTCCTTTTCTTTTTTATTCTACATTGTAATGTTAAATTGCATAATTACTTAAACACACACACACACATACACAACTAACCCGCATTCTTTGAGTTTGAAAACTATCAACCATTTTTTATTCAACTTATTCTTGTAATATATTTATATGCAACTTATCATTTTGTGTTTCTAGTTATATTTATATACAACTTATAATTTTGTGTTTCAAATGCACCTTGGTTTGTTTCAGGATCTTGGAAAGCAGGAATCTGAACTCCTATCTCCATGTGATGCACAGCGTATTAAATTGCAAGCTGAGATTTTCGAGCTGGAGGGAAGATTAACTGGAGACCACGAATGCTCAAATTTCTTGGATAGCTTAGATAATTTTATCAGTGAATCTGAGGAGGAATTGAATTCTGTAAAGAAGGTAAATTTTTTTTTCTCCCCAAAGCAGTTTTTTACTGTGTTCTCCTTTTCATGCATGAATAATTCAAAATCAAGGCTTGAAGCCATTCCATGTCATGATTGATTTTGTCTATCACTCAAAATTCCATAATTGAATCCTTATCCTTTTTGCATTAGATCTAGTCAATTCATTGATCTATTTATCTTGACTGTAAGTACTCTGTATTTTATCTTTAAGTACTCTGTATTTTATCTTTATTATAGGCACTTGCTTCAAGATTAAGGGAAACACTTGCATTAAAGAGGCTTCTTGACGATGTGCCAACCCAAACTGAACTCATCCAGTTTGTTGTTCTCTTATTCTCCTTCTGTTTTTCCTTCCTAAAAATTATTTTGTTTGTTCTTCATTGTTTCTAGATGATTATATGATATTATCTTCAATTTTTCTTGGTGATAATTGCATTGTCGTACCTCTTCTCAGCGATGATTGCATTGTTGTCACTTTTTCTTGGTCGTAGTTTGAATTCCTTAGTTGATCTTGGACACTTATCCAGTTTTCTGAGCTGCTGCGGCTGATATCTTGCTTAAAAGTTTAGGACCTAATGAAGTTTTTGTGTGCTTTTTAAAACACTAGAACTTCATTTTGAGAAGTGAAACTTAATCTTTAGGTCAGTAACAATTCTCAGCCTCTAACTCGGTACCTTCTTGATGGCGAAATCTAAATAGCCTCAGCGAGGTCTCATTATCTGATCTATTTCTGGCTGTTGATTAGTCTTGGATTACGACCATGCAGAAGCAACATGTAAAACTCCTATTTCTGGGAATGGCTGGAAACTAAGGAGCATTTAGTTGATATATATTCAAATAAGTGCCCCATTTCATTCTTGCTTTGATTATTATTGTTTATGCTCTTAATTGCATGCAGAGATGAATGCAGCTTCTTACCGAAGTAGTGGTGGCATGTCTATGTCATTCTTCTTCATCTTCTTCTTCTTCTTTGTATATATACATTCACACACATGAGTTTTTGTTTTAGCTTTACCTGCATTCTATTTATTCTATGTGAGACCATTCTTGATTCTACAATATTTGATTTCAAAAGACTTGTATGTTTAATATTGTTGGTAGGTGAGAACCATGATTTGAATCCATGACGTTAAAGACATGAGTTTACATCATGTCTATTCAACCATTGGACTAATGGCCACTCCATCACATGCCTGTGTATGGAGCTACGATTTTTTTTTCTCTTTCCCCCCCCTATTTTTCCCATCACAAATTGACTGCATTGTGTTAAAGATAGTGTCCAGTTCATTGCACGTGGTACACAATTTTAGATGTGGACACATTCCACTCATTTCTTTATTCCTCAACTCTGACTTCTGAATTTCTAAATTTCTGTGCTATCAACTCGAAGAATTCTGAACTTCTTTTTTCTTCTCAAATGTTCACATGGGCACTTTGAAATACTTCTAAATGCTTTACATTAGCTGGAAAGCCATCCTCTTCTGATTTAATCTCAGTTTGCAGGTACGAGCGCCGATTTTCAGAGCTATTCATTAACATCCAGGTTCAATTATTTTTTTTTCCATGAACTACTTGTTTGTCTTGATTCATATTATTTGTCAAACTTCTTCAGATGATGATATTTTACTCTTCAGCTAAAGATGTTCCATCATGCAGGATAAACATAGGCAAACACGCAGATACTATGCAACCTACAATGCACTCTTGGAGATAAAGGATCTGATGTTGAAGGAGACATCCTTGTTGAATTCCATAAGTTCACAGGTTAATGATCATTAAAAGTATACACTTTTGTCATTTCTTTCAGTATCTATACGTTAAGGAACTATTTTCCATGACTGCTAATATGATGATGACTCCTTTATCAAGGTGTATGAATTTTCGTTTGTAATGGGTGCACTAGGAATAATTCATCTTTCTTCTGCATGTTAAATTTTGTTCCTTTTATCTGCCAATTTATTGCTCGTATTTGGATTTTTTATTTCTAGTTCGATTATTTGGGACATTTAGTCCAGCCTCCTCCTTTCGTCCTTTTGGTAATCTGGTCAAGACTATTGTCATCGTCTTCTGTGATGATTTTTTTTTTTTAATTTTTTTTTATTTTTATGTTTGGGGCTAGTGATGGTGGTCGTTTCAACAAGAAAAAAGGCGGCGTCTATATACACACTATTTATCTGCATAAAGAATTTCTCTTAAAGCAAGTACAGTTTTGTTGTATGCTGTGAGATTTTCTGTTTCCCATTTGAAGGATAGATTGTACGAATCCTTATGCTGTAATAGTTTTTTTTTTTTTAAAGATATTAAATAAATTGTAGCCAACAGTTGCAAGGATTGCCAATAGATATGTGAAACGCATGATTAAAAATATTTTTTAGTGGACTTATCTAGTATCGACCTCCCATGCAATGATATGTTATTGTGTCCCACCTTAATCTAGTGTTGGTGGGATGTGATGTTGGTCCTAGAATGTACTAGTCATTTGACACTCCCATTTCTGATAGCAGCTGTGGTTGTTACTGTTTTCGAGGCTAATGTGTCAGTTTATACTCAATTGTGGCCCTGTGAGGTTGTGTTACTATAAGTTAGACGTGATTGCTGTGCACATATTTGAGACATCATAAACTAATATCCAGAAAGATAAATCAATTGTTAGGCGATCAACACCAACGTGCCGTGTTCATCAATAATTTTGTTGCCATTCATTGACAAGTTTGGTGGCTGTTTAAGAAACTCTGTTACTGATGTTCCCCTCAACTTTTGTAGTTTCAAGATGCCATAGCCAACTCCATGAGTCAAATGAAACTTATCGAATCCATGGAGGGAATTCTGAAAGGCATTCAACAGGTACTTTTTGTTTCCATTGTTGAGCTTATGACATACCAGAGTGGACCAACTCTAATGAAGATTTATAATTGGTGAAAGTAATAACTTCTAAATTAGATATTGTCATTGAAGTAACCAATATAAAAGAGCCACAAAGATCAAACCTAGCAAAAAATTTCCAAACTAAAATTTAAATTTTATTTAAGCTCAAGTTTCAANAGTAACCAATATAAAAGAGCCACAAAGATCAAACCTAGCAAAACATTTCCAAACTAAAATTTAAATTTTATTTAAGCTCAAGTTTCAATTTATGAAACTAAAATTGAGTTTAAAATTGATAACTGAGCTAAGTATAGAGGAATAAATAATTTTCCCTTTCTTATACTATTGGACGTTCTTGAGTTGTAGTCTTTTATTAGTATTATTATTTATCTCAGTTTAATAGATATTGATATATGCAGAAACTAGATAAGGTGCTTCTTTCTCATCAAGAAGAGCAGCAGGTCTGCAATGCCTTGAAAGAGAAATATGCTGCAGCAACTGCAGAGCAAAGACGTTGCTATGCACTCTTAAAAGCTTTCCAGGTGACCACTATAGCGTTGTGATTTGTGATTGATATTATATTTTTTTGTGCCAACTAAACATAGCTCAACTGGTTAAGACATTTATCCACGACTAAGAGATTAGAGGTTCAAATCTCTGTGGTAACTAAGGTGGTTTCATTTGATAAATTAAATTATTAAAAATTACCCTTCACCCAGCGGGGCAGTTCATTGAATGAGCAGAAACATTTAGACCAGGCTGTTCAGTTTTGATACATGAAGGTTCCCATAGTAGTATAATCCCTCTTAAACCACTCCTGTCCTTGCTTATTTTCTTTATTTTCCAGGAGGAATGTGCAAAGAACGAGAAACTTCGGACCCAAACTTCACCGTGAACAGATTTTAACCATTACCCATGCTTGTGTTGTGTAAGCCTTCATTCAATTTGGTCTTTGTTAGAGCGAGCTTTTGTGCAGAGTTCATTAGAGGACTTCAAAATAATGTTGATCAACTTAAAACGTGTTGCCCTGCCCCGTTCCAACTTCAAAGCCGGTATGTGAAAATATTAGCCCTCCTTAATGATTTCTGATATGTAATTACCCAACTTTTCAAGGGATAGAGCAATTGTATGAAAATCTAACGGGATAGAGCCTTTCGGATAGGAACAAACACATATCGTTGCATGTGTTTTTTTAAAAAATATTGCGGAGTAATTGAAGATCCCTTTGGGAACGGACCAATTTGAGGCTTCTGCTGTTAATTCTCATTAGAAGGAAACCTCAAA

mRNA sequence

ATGGATTCAGCGATGTATCGACCTGCTTATGGGCCAGGCCCATTTAAGTCACGGCCCAGCGACATTGGCCTTTGCCATTCGATCAGTTTCGACGGCGTTCGCAAATCCGTGATTTCTTCATTCGAGAAGCTGGCTTCCGGCATTCTCTGCTGCATCAAACCGGAACAGAGGTCGTATTTTCCTTCGTCCGGTTGCTTTCCATCCGCATCAGTGGTCCGTGTAATGTCTGAGGCGATCAAGAGCCAGGTGGATTCCGACAATGGAGTTTCAATGGATATACTAAAGGAGGACGTGGATGAACTGAACCAGAAGAAAGTTGCAGTGGTGAAGGACTTGCAATTTTTACAGGATAGAGTCAGTAAGGCGAATGCTAATCATGTGGTGCAGAATTTGATGTCATGCTTGAAGACTTTGGAGGATCTTGGAAAGCAGGAATCTGAACTCCTATCTCCATGTGATGCACAGCGTATTAAATTGCAAGCTGAGATTTTCGAGCTGGAGGGAAGATTAACTGGAGACCACGAATGCTCAAATTTCTTGGATAGCTTAGATAATTTTATCAGTGAATCTGAGGAGGAATTGAATTCTGTAAAGAAGGCACTTGCTTCAAGATTAAGGGAAACACTTGCATTAAAGAGGCTTCTTGACGATGTGCCAACCCAAACTGAACTCATCCAGTACGAGCGCCGATTTTCAGAGCTATTCATTAACATCCAGGATAAACATAGGCAAACACGCAGATACTATGCAACCTACAATGCACTCTTGGAGATAAAGGATCTGATGTTGAAGGAGACATCCTTGTTGAATTCCATAAGTTCACAGTTTCAAGATGCCATAGCCAACTCCATGAGTCAAATGAAACTTATCGAATCCATGGAGGGAATTCTGAAAGGCATTCAACAGAAACTAGATAAGGTGCTTCTTTCTCATCAAGAAGAGCAGCAGGTCTGCAATGCCTTGAAAGAGAAATATGCTGCAGCAACTGCAGAGCAAAGACGTTGCTATGCACTCTTAAAAGCTTTCCAGGAGGAATGTGCAAAGAACGAGAAACTTCGGACCCAAACTTCACCGTGAACAGATTTTAACCATTACCCATGCTTGTGTTGTGTAAGCCTTCATTCAATTTGGTCTTTGTTAGAGCGAGCTTTTGTGCAGAGTTCATTAGAGGACTTCAAAATAATGTTGATCAACTTAAAACGTGTTGCCCTGCCCCGTTCCAACTTCAAAGCCGGTATGTGAAAATATTAGCCCTCCTTAATGATTTCTGATATGTAATTACCCAACTTTTCAAGGGATAGAGCAATTGTATGAAAATCTAACGGGATAGAGCCTTTCGGATAGGAACAAACACATATCGTTGCATGTGTTTTTTTAAAAAATATTGCGGAGTAATTGAAGATCCCTTTGGGAACGGACCAATTTGAGGCTTCTGCTGTTAATTCTCATTAGAAGGAAACCTCAAA

Coding sequence (CDS)

ATGGATTCAGCGATGTATCGACCTGCTTATGGGCCAGGCCCATTTAAGTCACGGCCCAGCGACATTGGCCTTTGCCATTCGATCAGTTTCGACGGCGTTCGCAAATCCGTGATTTCTTCATTCGAGAAGCTGGCTTCCGGCATTCTCTGCTGCATCAAACCGGAACAGAGGTCGTATTTTCCTTCGTCCGGTTGCTTTCCATCCGCATCAGTGGTCCGTGTAATGTCTGAGGCGATCAAGAGCCAGGTGGATTCCGACAATGGAGTTTCAATGGATATACTAAAGGAGGACGTGGATGAACTGAACCAGAAGAAAGTTGCAGTGGTGAAGGACTTGCAATTTTTACAGGATAGAGTCAGTAAGGCGAATGCTAATCATGTGGTGCAGAATTTGATGTCATGCTTGAAGACTTTGGAGGATCTTGGAAAGCAGGAATCTGAACTCCTATCTCCATGTGATGCACAGCGTATTAAATTGCAAGCTGAGATTTTCGAGCTGGAGGGAAGATTAACTGGAGACCACGAATGCTCAAATTTCTTGGATAGCTTAGATAATTTTATCAGTGAATCTGAGGAGGAATTGAATTCTGTAAAGAAGGCACTTGCTTCAAGATTAAGGGAAACACTTGCATTAAAGAGGCTTCTTGACGATGTGCCAACCCAAACTGAACTCATCCAGTACGAGCGCCGATTTTCAGAGCTATTCATTAACATCCAGGATAAACATAGGCAAACACGCAGATACTATGCAACCTACAATGCACTCTTGGAGATAAAGGATCTGATGTTGAAGGAGACATCCTTGTTGAATTCCATAAGTTCACAGTTTCAAGATGCCATAGCCAACTCCATGAGTCAAATGAAACTTATCGAATCCATGGAGGGAATTCTGAAAGGCATTCAACAGAAACTAGATAAGGTGCTTCTTTCTCATCAAGAAGAGCAGCAGGTCTGCAATGCCTTGAAAGAGAAATATGCTGCAGCAACTGCAGAGCAAAGACGTTGCTATGCACTCTTAAAAGCTTTCCAGGAGGAATGTGCAAAGAACGAGAAACTTCGGACCCAAACTTCACCGTGA

Protein sequence

MDSAMYRPAYGPGPFKSRPSDIGLCHSISFDGVRKSVISSFEKLASGILCCIKPEQRSYFPSSGCFPSASVVRVMSEAIKSQVDSDNGVSMDILKEDVDELNQKKVAVVKDLQFLQDRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHECSNFLDSLDNFISESEEELNSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSELFINIQDKHRQTRRYYATYNALLEIKDLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGILKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQTSP

Homology

[Close]

BLAST of Cp4.1LG11g05810 vs. ExPASy Swiss-Prot
Match: Q5ZKI4 (Coiled-coil domain-containing protein 93 OS=Gallus gallus OX=9031 GN=CCDC93 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.4e-27
Identity = 87/260 (33.46%), Postives = 145/260 (55.77%), Query Frame = 0


Query: 95  KEDVDELNQKKVAVVKDLQFLQDRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDA 154
           K+ + E+      + K+L  L+   S+A+++ V+QNL   +   E+L  QE E  + C  
Sbjct: 352 KKTLTEVESYSEKLDKELAALETIESQADSS-VLQNLRMLVAINENLKSQEQEFKAHCRE 411

Query: 155 QRIKLQAEIFEL--EGRLTGDHECSNFLDSLDNFISESEEELNSVKKALASRLRETLALK 214
           +  +LQ +I  L  E    G+ E  N L  +D      +E+L  ++  LA R RE   L+
Sbjct: 412 EMERLQQDIENLKAEAAENGEEEEPNKL--IDQQYQTEKEKLQKIRLLLARRNREIAILQ 471

Query: 215 RLLDDVPTQTELIQYERRFSELFINIQDKHRQTRRYYATYNALLEIKDLMLKETSLLNSI 274
           R +D+VP++ EL QY++RF EL+  +   H++T++++  YN L + K  + KE +LLNSI
Sbjct: 472 RKIDEVPSRAELTQYQKRFIELYSQVSATHKETKQFFTLYNTLDDKKVYLEKEVNLLNSI 531

Query: 275 SSQFQDAIANSMSQMKLIESMEGILKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQ 334
              F  A+A+S S+ + +  ME I++GI+Q   K+    QE +   + L ++Y     +Q
Sbjct: 532 HDNFHQAMASSGSREQFLRQMEQIVEGIKQNRMKMEKKKQENKMRRDQLNDEYLELLEKQ 591

Query: 335 RRCYALLKAFQEECAKNEKL 353
           R  +  +K F+EEC KNE L
Sbjct: 592 RLYFKTVKEFKEECRKNEML 608

[Close]

BLAST of Cp4.1LG11g05810 vs. ExPASy Swiss-Prot
Match: Q640U7 (Coiled-coil domain-containing protein 93 OS=Xenopus tropicalis OX=8364 GN=ccdc93 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.9e-26
Identity = 80/258 (31.01%), Postives = 138/258 (53.49%), Query Frame = 0


Query: 95  KEDVDELNQKKVAVVKDLQFLQDRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDA 154
           ++ + E+      + ++L  L++  SKA+ + V+Q L   +   E L  QE +  S C  
Sbjct: 345 RKQLTEVTSHMEKLDQELSVLENMESKADPS-VLQKLRDLVAQNESLKAQEQQFRSKCRE 404

Query: 155 QRIKLQAEIFELEGRLTGDHECSNFLDSLDNFISESEEELNSVKKALASRLRETLALKRL 214
           +  +LQ  I  L+   T   E      + +       E+L  ++  LA R RE   L+R 
Sbjct: 405 EMSRLQQNIDGLKAAATEHGEEKEQTQAFEQQYKAEREKLQKIRLLLARRNREIAILQRK 464

Query: 215 LDDVPTQTELIQYERRFSELFINIQDKHRQTRRYYATYNALLEIKDLMLKETSLLNSISS 274
           +D+VP++ EL QY++RF EL+  +   H++T++++  YN L + K  + KE +LLNSI  
Sbjct: 465 IDEVPSRAELTQYQKRFIELYGQVSATHKETKQFFTLYNTLDDKKVYLEKEVNLLNSIHD 524

Query: 275 QFQDAIANSMSQMKLIESMEGILKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRR 334
            FQ A+A+  ++ + +  ME I+ GI+Q  +K+    QE +   + L ++Y     +QR 
Sbjct: 525 NFQQAMASPSARDQFLRQMEQIVDGIRQSRNKMEKKKQENKMKRDQLNDEYLELLEKQRL 584

Query: 335 CYALLKAFQEECAKNEKL 353
            +  +K F+EEC KNE L
Sbjct: 585 YFKTVKEFKEECRKNETL 601

[Close]

BLAST of Cp4.1LG11g05810 vs. ExPASy Swiss-Prot
Match: Q6GQI5 (Coiled-coil domain-containing protein 93 OS=Xenopus laevis OX=8355 GN=ccdc93 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.4e-25
Identity = 80/261 (30.65%), Postives = 138/261 (52.87%), Query Frame = 0


Query: 95  KEDVDELNQKKVAVVKDLQFLQDRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDA 154
           K+ + E+      + ++L  L+   SKA+ + V+Q L   +   E L  QE +  S C  
Sbjct: 344 KKQLTEVTSHMENLEQELLVLEKVESKADPS-VLQKLRDLVAQNESLKLQEQQFRSKCRE 403

Query: 155 QRIKLQAEIFELEGRLTGDHECSNFLDSLDNFISESEEELNSVKKALASRLRETLALKRL 214
           +  +LQ  I  L+   T   E      + +      +E+L  ++  LA R RE   L R 
Sbjct: 404 EMSRLQQNIDSLKAAATEHGEEKEQSQAFEQQYKAEKEKLQKIRLLLARRNREIAILHRK 463

Query: 215 LDDVPTQTELIQYERRFSELFINIQDKHRQTRRYYATYNALLEIKDLMLKETSLLNSISS 274
           +D+VP++ EL QY++RF EL+  +   H++T++++  YN L + K  + KE +LLNS+  
Sbjct: 464 IDEVPSRAELTQYQKRFIELYGQVSATHKETKQFFTLYNTLDDKKVYLEKEVNLLNSVHD 523

Query: 275 QFQDAIANSMSQMKLIESMEGILKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRR 334
            FQ A+A+   + + +  ME I+ GI+Q  +K+    QE +   + L ++Y     +QR 
Sbjct: 524 NFQQAMASPSVRDQFLRQMEQIVDGIRQSRNKMEKKKQENKMKRDQLNDEYLELLEKQRL 583

Query: 335 CYALLKAFQEECAKNEKLRTQ 356
            +  +K F+EEC +NE L T+
Sbjct: 584 YFKTVKEFREECRRNETLLTK 603

[Close]

BLAST of Cp4.1LG11g05810 vs. ExPASy Swiss-Prot
Match: Q5BJT7 (Coiled-coil domain-containing protein 93 OS=Rattus norvegicus OX=10116 GN=Ccdc93 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.9e-23
Identity = 88/281 (31.32%), Postives = 148/281 (52.67%), Query Frame = 0


Query: 85  SDNGVSMDILKEDVDELNQKKVAVVKDLQFLQDRVSKANANHVVQNLMSCLKTLEDLGKQ 144
           SD   ++  LK   ++L+Q++ A       L+   +KA+ + ++QNL + +   E L  Q
Sbjct: 348 SDKKKTLTELKNHGEKLDQEQAA-------LEKLEAKADPS-ILQNLRALVAMNESLKSQ 407

Query: 145 ESELLSPCDAQRIKLQAEIFELEG-RLTGDHECSN------------FLDSLDNFISESE 204
           E E  + C  +  +LQ EI  L+  R  G+   S+              + LD   +  +
Sbjct: 408 EQEFKAHCREEMARLQQEIEILKAERAPGEKTISSGEPQGALTSTMTHNEDLDRRYNMEK 467

Query: 205 EELNSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSELFINIQDKHRQTRRYYAT 264
           E+L  ++   A R RE   L R +D+VP++ ELIQY++RF EL+  I   H++T++++  
Sbjct: 468 EKLYKIRLLQARRNREIAILHRKIDEVPSRAELIQYQKRFIELYRQISAVHKETKQFFTL 527

Query: 265 YNALLEIKDLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGILKGIQQKLDKVLLSH 324
           YN L + K  + KE SLLNSI   F  A+A+  ++ + +  ME I++GI+Q   K+    
Sbjct: 528 YNTLDDKKVYLEKEISLLNSIHENFSQAMASPAARDQFLRQMEQIVEGIKQSRMKMEKKK 587

Query: 325 QEEQQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKL 353
           QE +   + L ++Y     +QR  +  +K F+EE  KNE L
Sbjct: 588 QENKMRRDQLNDQYLELLEKQRLYFKTVKEFKEEGRKNELL 620

[Close]

BLAST of Cp4.1LG11g05810 vs. ExPASy Swiss-Prot
Match: Q567U6 (Coiled-coil domain-containing protein 93 OS=Homo sapiens OX=9606 GN=CCDC93 PE=1 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 5.1e-23
Identity = 85/273 (31.14%), Postives = 141/273 (51.65%), Query Frame = 0


Query: 95  KEDVDELNQKKVAVVKDLQFLQDRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDA 154
           K+ + EL      + K+   L+   SKA+ + ++QNL + +   E+L  QE E  + C  
Sbjct: 351 KKTLTELKTYSEKLDKEQAALEKIESKADPS-ILQNLRALVAMNENLKSQEQEFKAHCRE 410

Query: 155 QRIKLQAEIFELEGRLT--GDHE-------------CSNFLDSLDNFISESEEELNSVKK 214
           +  +LQ EI  L+      GD +                  + LD   +  +E+L  ++ 
Sbjct: 411 EMTRLQQEIENLKAERAPRGDEKTLSSGEPPGTLTSAMTHDEDLDRRYNMEKEKLYKIRL 470

Query: 215 ALASRLRETLALKRLLDDVPTQTELIQYERRFSELFINIQDKHRQTRRYYATYNALLEIK 274
             A R RE   L R +D+VP++ ELIQY++RF EL+  I   H++T++++  YN L + K
Sbjct: 471 LQARRNREIAILHRKIDEVPSRAELIQYQKRFIELYRQISAVHKETKQFFTLYNTLDDKK 530

Query: 275 DLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGILKGIQQKLDKVLLSHQEEQQVCN 334
             + KE SLLNSI   F  A+A+  ++ + +  ME I++GI+Q   K+    QE +   +
Sbjct: 531 VYLEKEISLLNSIHENFSQAMASPAARDQFLRQMEQIVEGIKQSRMKMEKKKQENKMRRD 590

Query: 335 ALKEKYAAATAEQRRCYALLKAFQEECAKNEKL 353
            L ++Y     +QR  +  +K F+EE  KNE L
Sbjct: 591 QLNDQYLELLEKQRLYFKTVKEFKEEGRKNEML 622

[Close]

BLAST of Cp4.1LG11g05810 vs. NCBI nr
Match: XP_023547315.1 (coiled-coil domain-containing protein 93 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023547316.1 coiled-coil domain-containing protein 93 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023547318.1 coiled-coil domain-containing protein 93 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 523 bits (1347), Expect = 6.98e-185
Identity = 284/302 (94.04%), Postives = 284/302 (94.04%), Query Frame = 0


Query: 75  MSEAIKSQ------------------VDSDNGVSMDILKEDVDELNQKKVAVVKDLQFLQ 134
           MSEAIKSQ                  VDSDNGVSMDILKEDVDELNQKKVAVVKDLQFLQ
Sbjct: 1   MSEAIKSQGTCSERLIEENKCLQSLQVDSDNGVSMDILKEDVDELNQKKVAVVKDLQFLQ 60

Query: 135 DRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHEC 194
           DRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHEC
Sbjct: 61  DRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHEC 120

Query: 195 SNFLDSLDNFISESEEELNSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSELFI 254
           SNFLDSLDNFISESEEELNSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSELFI
Sbjct: 121 SNFLDSLDNFISESEEELNSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSELFI 180

Query: 255 NIQDKHRQTRRYYATYNALLEIKDLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGI 314
           NIQDKHRQTRRYYATYNALLEIKDLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGI
Sbjct: 181 NIQDKHRQTRRYYATYNALLEIKDLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGI 240

Query: 315 LKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQT 358
           LKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQT
Sbjct: 241 LKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQT 300

[Close]

BLAST of Cp4.1LG11g05810 vs. NCBI nr
Match: KAG7029776.1 (Coiled-coil domain-containing protein 93 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 513 bits (1322), Expect = 4.47e-181
Identity = 279/301 (92.69%), Postives = 280/301 (93.02%), Query Frame = 0


Query: 75  MSEAIKSQ------------------VDSDNGVSMDILKEDVDELNQKKVAVVKDLQFLQ 134
           MSEAIKSQ                  VDSDNGVSMDILKEDVDELNQKKVAVVKDLQFLQ
Sbjct: 1   MSEAIKSQGTCSERLIEENKCLQSLQVDSDNGVSMDILKEDVDELNQKKVAVVKDLQFLQ 60

Query: 135 DRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHEC 194
           DRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDAQRIKLQAEIFEL+GR TGDHEC
Sbjct: 61  DRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDAQRIKLQAEIFELDGRFTGDHEC 120

Query: 195 SNFLDSLDNFISESEEELNSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSELFI 254
           SNFLDSLDNF SESEEELNSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSELFI
Sbjct: 121 SNFLDSLDNFTSESEEELNSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSELFI 180

Query: 255 NIQDKHRQTRRYYATYNALLEIKDLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGI 314
           NIQDKHRQTRRYYATYNALLEIKDL LKETSLLNSISSQFQDAIANSMSQMKLIESMEGI
Sbjct: 181 NIQDKHRQTRRYYATYNALLEIKDLTLKETSLLNSISSQFQDAIANSMSQMKLIESMEGI 240

Query: 315 LKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQT 357
           LKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQT
Sbjct: 241 LKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQT 300

[Close]

BLAST of Cp4.1LG11g05810 vs. NCBI nr
Match: XP_022929770.1 (coiled-coil domain-containing protein 93 isoform X1 [Cucurbita moschata] >XP_022929771.1 coiled-coil domain-containing protein 93 isoform X1 [Cucurbita moschata])

HSP 1 Score: 513 bits (1320), Expect = 9.01e-181
Identity = 280/301 (93.02%), Postives = 281/301 (93.36%), Query Frame = 0


Query: 75  MSEAIKSQ------------------VDSDNGVSMDILKEDVDELNQKKVAVVKDLQFLQ 134
           MSEAIKSQ                  VDSDNGVSMDILKEDVDELNQKKVAVVKDLQFLQ
Sbjct: 1   MSEAIKSQGTCSERLIEENKCLQSLQVDSDNGVSMDILKEDVDELNQKKVAVVKDLQFLQ 60

Query: 135 DRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHEC 194
           DRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHE 
Sbjct: 61  DRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHEG 120

Query: 195 SNFLDSLDNFISESEEELNSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSELFI 254
           SNFLDSLDNFISESEEELNSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSEL+I
Sbjct: 121 SNFLDSLDNFISESEEELNSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSELYI 180

Query: 255 NIQDKHRQTRRYYATYNALLEIKDLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGI 314
           NIQDKHRQTRRYYATYNALLEIKDLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGI
Sbjct: 181 NIQDKHRQTRRYYATYNALLEIKDLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGI 240

Query: 315 LKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQT 357
           LKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQ 
Sbjct: 241 LKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQN 300

[Close]

BLAST of Cp4.1LG11g05810 vs. NCBI nr
Match: XP_022997448.1 (coiled-coil domain-containing protein 93 isoform X1 [Cucurbita maxima] >XP_022997449.1 coiled-coil domain-containing protein 93 isoform X1 [Cucurbita maxima])

HSP 1 Score: 505 bits (1300), Expect = 9.98e-178
Identity = 277/301 (92.03%), Postives = 278/301 (92.36%), Query Frame = 0


Query: 75  MSEAIKSQ------------------VDSDNGVSMDILKEDVDELNQKKVAVVKDLQFLQ 134
           MSEAIKSQ                  VDSDNGVSMDILKEDVDELNQKKVAV KDLQFLQ
Sbjct: 1   MSEAIKSQGTCSERLIEENKCLQSLQVDSDNGVSMDILKEDVDELNQKKVAVGKDLQFLQ 60

Query: 135 DRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHEC 194
           DRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHEC
Sbjct: 61  DRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHEC 120

Query: 195 SNFLDSLDNFISESEEELNSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSELFI 254
           SNFLDSLDNFISESEEELNSVKKALASRLRETLALK LLDDVPTQTELIQYERRFSEL+I
Sbjct: 121 SNFLDSLDNFISESEEELNSVKKALASRLRETLALKWLLDDVPTQTELIQYERRFSELYI 180

Query: 255 NIQDKHRQTRRYYATYNALLEIKDLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGI 314
           NIQDK RQTRRYYATYNALLEIKDLMLKE SLLNSISSQFQDAIANSMSQMKLIESMEGI
Sbjct: 181 NIQDKLRQTRRYYATYNALLEIKDLMLKEISLLNSISSQFQDAIANSMSQMKLIESMEGI 240

Query: 315 LKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQT 357
           LKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQ 
Sbjct: 241 LKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQN 300

[Close]

BLAST of Cp4.1LG11g05810 vs. NCBI nr
Match: XP_023547319.1 (coiled-coil domain-containing protein 93 isoform X3 [Cucurbita pepo subsp. pepo] >XP_023547320.1 coiled-coil domain-containing protein 93 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 489 bits (1260), Expect = 3.18e-172
Identity = 265/284 (93.31%), Postives = 265/284 (93.31%), Query Frame = 0


Query: 75  MSEAIKSQVDSDNGVSMDILKEDVDELNQKKVAVVKDLQFLQDRVSKANANHVVQNLMSC 134
           MSEAIKSQ                   NQKKVAVVKDLQFLQDRVSKANANHVVQNLMSC
Sbjct: 1   MSEAIKSQ-------------------NQKKVAVVKDLQFLQDRVSKANANHVVQNLMSC 60

Query: 135 LKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHECSNFLDSLDNFISESEEEL 194
           LKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHECSNFLDSLDNFISESEEEL
Sbjct: 61  LKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHECSNFLDSLDNFISESEEEL 120

Query: 195 NSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSELFINIQDKHRQTRRYYATYNA 254
           NSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSELFINIQDKHRQTRRYYATYNA
Sbjct: 121 NSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSELFINIQDKHRQTRRYYATYNA 180

Query: 255 LLEIKDLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGILKGIQQKLDKVLLSHQEE 314
           LLEIKDLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGILKGIQQKLDKVLLSHQEE
Sbjct: 181 LLEIKDLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGILKGIQQKLDKVLLSHQEE 240

Query: 315 QQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQTSP 358
           QQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQTSP
Sbjct: 241 QQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQTSP 265

[Close]

BLAST of Cp4.1LG11g05810 vs. ExPASy TrEMBL
Match: A0A6J1EP31 (coiled-coil domain-containing protein 93 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436260 PE=4 SV=1)

HSP 1 Score: 513 bits (1320), Expect = 4.36e-181
Identity = 280/301 (93.02%), Postives = 281/301 (93.36%), Query Frame = 0


Query: 75  MSEAIKSQ------------------VDSDNGVSMDILKEDVDELNQKKVAVVKDLQFLQ 134
           MSEAIKSQ                  VDSDNGVSMDILKEDVDELNQKKVAVVKDLQFLQ
Sbjct: 1   MSEAIKSQGTCSERLIEENKCLQSLQVDSDNGVSMDILKEDVDELNQKKVAVVKDLQFLQ 60

Query: 135 DRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHEC 194
           DRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHE 
Sbjct: 61  DRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHEG 120

Query: 195 SNFLDSLDNFISESEEELNSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSELFI 254
           SNFLDSLDNFISESEEELNSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSEL+I
Sbjct: 121 SNFLDSLDNFISESEEELNSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSELYI 180

Query: 255 NIQDKHRQTRRYYATYNALLEIKDLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGI 314
           NIQDKHRQTRRYYATYNALLEIKDLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGI
Sbjct: 181 NIQDKHRQTRRYYATYNALLEIKDLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGI 240

Query: 315 LKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQT 357
           LKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQ 
Sbjct: 241 LKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQN 300

[Close]

BLAST of Cp4.1LG11g05810 vs. ExPASy TrEMBL
Match: A0A6J1KBC9 (coiled-coil domain-containing protein 93 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492362 PE=4 SV=1)

HSP 1 Score: 505 bits (1300), Expect = 4.83e-178
Identity = 277/301 (92.03%), Postives = 278/301 (92.36%), Query Frame = 0


Query: 75  MSEAIKSQ------------------VDSDNGVSMDILKEDVDELNQKKVAVVKDLQFLQ 134
           MSEAIKSQ                  VDSDNGVSMDILKEDVDELNQKKVAV KDLQFLQ
Sbjct: 1   MSEAIKSQGTCSERLIEENKCLQSLQVDSDNGVSMDILKEDVDELNQKKVAVGKDLQFLQ 60

Query: 135 DRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHEC 194
           DRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHEC
Sbjct: 61  DRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHEC 120

Query: 195 SNFLDSLDNFISESEEELNSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSELFI 254
           SNFLDSLDNFISESEEELNSVKKALASRLRETLALK LLDDVPTQTELIQYERRFSEL+I
Sbjct: 121 SNFLDSLDNFISESEEELNSVKKALASRLRETLALKWLLDDVPTQTELIQYERRFSELYI 180

Query: 255 NIQDKHRQTRRYYATYNALLEIKDLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGI 314
           NIQDK RQTRRYYATYNALLEIKDLMLKE SLLNSISSQFQDAIANSMSQMKLIESMEGI
Sbjct: 181 NIQDKLRQTRRYYATYNALLEIKDLMLKEISLLNSISSQFQDAIANSMSQMKLIESMEGI 240

Query: 315 LKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQT 357
           LKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQ 
Sbjct: 241 LKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQN 300

[Close]

BLAST of Cp4.1LG11g05810 vs. ExPASy TrEMBL
Match: A0A6J1EPR3 (coiled-coil domain-containing protein 93 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436260 PE=4 SV=1)

HSP 1 Score: 479 bits (1233), Expect = 1.98e-168
Identity = 261/283 (92.23%), Postives = 262/283 (92.58%), Query Frame = 0


Query: 75  MSEAIKSQVDSDNGVSMDILKEDVDELNQKKVAVVKDLQFLQDRVSKANANHVVQNLMSC 134
           MSEAIKSQ                   NQKKVAVVKDLQFLQDRVSKANANHVVQNLMSC
Sbjct: 1   MSEAIKSQ-------------------NQKKVAVVKDLQFLQDRVSKANANHVVQNLMSC 60

Query: 135 LKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHECSNFLDSLDNFISESEEEL 194
           LKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHE SNFLDSLDNFISESEEEL
Sbjct: 61  LKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHEGSNFLDSLDNFISESEEEL 120

Query: 195 NSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSELFINIQDKHRQTRRYYATYNA 254
           NSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSEL+INIQDKHRQTRRYYATYNA
Sbjct: 121 NSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSELYINIQDKHRQTRRYYATYNA 180

Query: 255 LLEIKDLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGILKGIQQKLDKVLLSHQEE 314
           LLEIKDLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGILKGIQQKLDKVLLSHQEE
Sbjct: 181 LLEIKDLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGILKGIQQKLDKVLLSHQEE 240

Query: 315 QQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQTS 357
           QQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQ S
Sbjct: 241 QQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQNS 264

[Close]

BLAST of Cp4.1LG11g05810 vs. ExPASy TrEMBL
Match: A0A6J1K9N9 (coiled-coil domain-containing protein 93 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492362 PE=4 SV=1)

HSP 1 Score: 471 bits (1213), Expect = 2.20e-165
Identity = 258/283 (91.17%), Postives = 259/283 (91.52%), Query Frame = 0


Query: 75  MSEAIKSQVDSDNGVSMDILKEDVDELNQKKVAVVKDLQFLQDRVSKANANHVVQNLMSC 134
           MSEAIKSQ                   NQKKVAV KDLQFLQDRVSKANANHVVQNLMSC
Sbjct: 1   MSEAIKSQ-------------------NQKKVAVGKDLQFLQDRVSKANANHVVQNLMSC 60

Query: 135 LKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHECSNFLDSLDNFISESEEEL 194
           LKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHECSNFLDSLDNFISESEEEL
Sbjct: 61  LKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHECSNFLDSLDNFISESEEEL 120

Query: 195 NSVKKALASRLRETLALKRLLDDVPTQTELIQYERRFSELFINIQDKHRQTRRYYATYNA 254
           NSVKKALASRLRETLALK LLDDVPTQTELIQYERRFSEL+INIQDK RQTRRYYATYNA
Sbjct: 121 NSVKKALASRLRETLALKWLLDDVPTQTELIQYERRFSELYINIQDKLRQTRRYYATYNA 180

Query: 255 LLEIKDLMLKETSLLNSISSQFQDAIANSMSQMKLIESMEGILKGIQQKLDKVLLSHQEE 314
           LLEIKDLMLKE SLLNSISSQFQDAIANSMSQMKLIESMEGILKGIQQKLDKVLLSHQEE
Sbjct: 181 LLEIKDLMLKEISLLNSISSQFQDAIANSMSQMKLIESMEGILKGIQQKLDKVLLSHQEE 240

Query: 315 QQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQTS 357
           QQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQ S
Sbjct: 241 QQVCNALKEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQNS 264

[Close]

BLAST of Cp4.1LG11g05810 vs. ExPASy TrEMBL
Match: A0A1S3BCQ6 (coiled-coil domain-containing protein 93 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103488264 PE=4 SV=1)

HSP 1 Score: 424 bits (1090), Expect = 3.97e-146
Identity = 232/274 (84.67%), Postives = 249/274 (90.88%), Query Frame = 0


Query: 82  QVDSDNGVSMDILKEDVDELNQKKVAVVKDLQFLQDRVSKANANHVVQNLMSCLKTLEDL 141
           QVD DNGVSM +LKED+DEL+QKKVA+VKDLQ L+DRV K +AN VVQNLMSCLKTLEDL
Sbjct: 26  QVDPDNGVSM-VLKEDMDELDQKKVAMVKDLQLLRDRVDKVDAN-VVQNLMSCLKTLEDL 85

Query: 142 GKQESELLSPCDAQRIKLQAEIFELEGRLTGDHECSNFLDSLDNFISESEEELNSVKKAL 201
           GKQESE LS  +++R +LQ EI EL GRLTGDHECSNF DSLD+ IS SEEEL+SVKKAL
Sbjct: 86  GKQESEFLSTSNSKRSELQDEIIELGGRLTGDHECSNFFDSLDDLISASEEELDSVKKAL 145

Query: 202 ASRLRETLALKRLLDDVPTQTELIQYERRFSELFINIQDKHRQTRRYYATYNALLEIKDL 261
            S +RETLALKRLLDDVPTQTELIQYERRFSEL+INIQDK RQTRRYYATYNALLEIKDL
Sbjct: 146 MSSVRETLALKRLLDDVPTQTELIQYERRFSELYINIQDKLRQTRRYYATYNALLEIKDL 205

Query: 262 MLKETSLLNSISSQFQDAIANSMSQMKLIESMEGILKGIQQKLDKVLLSHQEEQQVCNAL 321
           MLKETSLLNSISSQFQDAIA+S S+MKLI+SM GILKGIQQKLDKV LSHQEEQQVCNAL
Sbjct: 206 MLKETSLLNSISSQFQDAIASSASKMKLIDSMVGILKGIQQKLDKVNLSHQEEQQVCNAL 265

Query: 322 KEKYAAATAEQRRCYALLKAFQEECAKNEKLRTQ 355
           KEKYAAA  EQRRCY LLKAFQEECAKNEKLRTQ
Sbjct: 266 KEKYAAAAVEQRRCYTLLKAFQEECAKNEKLRTQ 297

[Close]

BLAST of Cp4.1LG11g05810 vs. TAIR 10
Match: AT4G32560.1 (paramyosin-related )

HSP 1 Score: 240.4 bits (612), Expect = 2.3e-63
Identity = 138/264 (52.27%), Postives = 185/264 (70.08%), Query Frame = 0


Query: 94  LKEDVDELNQKKVAVVKDLQFLQDRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCD 153
           L   V E NQ+K      LQ L++R+SK   +  VQ L+  L++L++  K+ESE+ S C+
Sbjct: 37  LSVKVKEQNQRKCDAKDKLQQLRERISKEVVDVSVQELIPLLRSLKEFVKEESEVRSRCN 96

Query: 154 AQRIKLQAEIFELEGRLTGDHECSNFLDSLDNFISESEEELNSVKKALASRLRETLALKR 213
            +R  L+  + +LE R     +     + LD  +  S + L S KK L + LRE ++LKR
Sbjct: 97  VKRSALEDAVHDLEERAGKGLDGEIQEEDLDGLLVVSLDNLTSAKKELGATLREIVSLKR 156

Query: 214 LLDDVPTQTELIQYERRFSELFINIQDKHRQTRRYYATYNALLEIKDLMLKETSLLNSIS 273
            +DDVP Q+EL+QYERRFSEL + IQ+K +QTR+ YATYNALLEIKDLMLKETSLLNSI 
Sbjct: 157 QIDDVPCQSELLQYERRFSELNVCIQEKLQQTRKLYATYNALLEIKDLMLKETSLLNSIG 216

Query: 274 SQFQDAIANSMSQMKLIESMEGILKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQR 333
           SQFQD I     ++KLI+SMEG++KGIQQK+ K+ L  QEEQ++ +A KEKY AA AEQR
Sbjct: 217 SQFQDVIGTPAGRVKLIDSMEGVMKGIQQKIGKIQLGLQEEQRLRDASKEKYIAAAAEQR 276

Query: 334 RCYALLKAFQEECAKNEKLRTQTS 358
           +CY +L+A+QEEC KNE+LR+  S
Sbjct: 277 KCYTVLRAYQEECTKNERLRSHIS 300

[Close]

BLAST of Cp4.1LG11g05810 vs. TAIR 10
Match: AT4G32560.2 (paramyosin-related )

HSP 1 Score: 240.4 bits (612), Expect = 2.3e-63
Identity = 138/264 (52.27%), Postives = 185/264 (70.08%), Query Frame = 0


Query: 94  LKEDVDELNQKKVAVVKDLQFLQDRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCD 153
           L   V E NQ+K      LQ L++R+SK   +  VQ L+  L++L++  K+ESE+ S C+
Sbjct: 37  LSVKVKEQNQRKCDAKDKLQQLRERISKEVVDVSVQELIPLLRSLKEFVKEESEVRSRCN 96

Query: 154 AQRIKLQAEIFELEGRLTGDHECSNFLDSLDNFISESEEELNSVKKALASRLRETLALKR 213
            +R  L+  + +LE R     +     + LD  +  S + L S KK L + LRE ++LKR
Sbjct: 97  VKRSALEDAVHDLEERAGKGLDGEIQEEDLDGLLVVSLDNLTSAKKELGATLREIVSLKR 156

Query: 214 LLDDVPTQTELIQYERRFSELFINIQDKHRQTRRYYATYNALLEIKDLMLKETSLLNSIS 273
            +DDVP Q+EL+QYERRFSEL + IQ+K +QTR+ YATYNALLEIKDLMLKETSLLNSI 
Sbjct: 157 QIDDVPCQSELLQYERRFSELNVCIQEKLQQTRKLYATYNALLEIKDLMLKETSLLNSIG 216

Query: 274 SQFQDAIANSMSQMKLIESMEGILKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQR 333
           SQFQD I     ++KLI+SMEG++KGIQQK+ K+ L  QEEQ++ +A KEKY AA AEQR
Sbjct: 217 SQFQDVIGTPAGRVKLIDSMEGVMKGIQQKIGKIQLGLQEEQRLRDASKEKYIAAAAEQR 276

Query: 334 RCYALLKAFQEECAKNEKLRTQTS 358
           +CY +L+A+QEEC KNE+LR+  S
Sbjct: 277 KCYTVLRAYQEECTKNERLRSHIS 300

[Close]

BLAST of Cp4.1LG11g05810 vs. TAIR 10
Match: AT4G32560.3 (paramyosin-related )

HSP 1 Score: 236.9 bits (603), Expect = 2.5e-62
Identity = 139/269 (51.67%), Postives = 187/269 (69.52%), Query Frame = 0


Query: 94  LKEDVDELN-----QKKVAVVKDLQFLQDRVSKANANHVVQNLMSCLKTLEDLGKQESEL 153
           LK  V EL+     Q+K      LQ L++R+SK   +  VQ L+  L++L++  K+ESE+
Sbjct: 30  LKASVRELSVKVKEQRKCDAKDKLQQLRERISKEVVDVSVQELIPLLRSLKEFVKEESEV 89

Query: 154 LSPCDAQRIKLQAEIFELEGRLTGDHECSNFLDSLDNFISESEEELNSVKKALASRLRET 213
            S C+ +R  L+  + +LE R     +     + LD  +  S + L S KK L + LRE 
Sbjct: 90  RSRCNVKRSALEDAVHDLEERAGKGLDGEIQEEDLDGLLVVSLDNLTSAKKELGATLREI 149

Query: 214 LALKRLLDDVPTQTELIQYERRFSELFINIQDKHRQTRRYYATYNALLEIKDLMLKETSL 273
           ++LKR +DDVP Q+EL+QYERRFSEL + IQ+K +QTR+ YATYNALLEIKDLMLKETSL
Sbjct: 150 VSLKRQIDDVPCQSELLQYERRFSELNVCIQEKLQQTRKLYATYNALLEIKDLMLKETSL 209

Query: 274 LNSISSQFQDAIANSMSQMKLIESMEGILKGIQQKLDKVLLSHQEEQQVCNALKEKYAAA 333
           LNSI SQFQD I     ++KLI+SMEG++KGIQQK+ K+ L  QEEQ++ +A KEKY AA
Sbjct: 210 LNSIGSQFQDVIGTPAGRVKLIDSMEGVMKGIQQKIGKIQLGLQEEQRLRDASKEKYIAA 269

Query: 334 TAEQRRCYALLKAFQEECAKNEKLRTQTS 358
            AEQR+CY +L+A+QEEC KNE+LR+  S
Sbjct: 270 AAEQRKCYTVLRAYQEECTKNERLRSHIS 298

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g05810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5ZKI4	3.4e-27	33.46	Coiled-coil domain-containing protein 93 OS=Gallus gallus OX=9031 GN=CCDC93 PE=2...	[more]
Q640U7	2.9e-26	31.01	Coiled-coil domain-containing protein 93 OS=Xenopus tropicalis OX=8364 GN=ccdc93...	[more]
Q6GQI5	2.4e-25	30.65	Coiled-coil domain-containing protein 93 OS=Xenopus laevis OX=8355 GN=ccdc93 PE=...	[more]
Q5BJT7	3.9e-23	31.32	Coiled-coil domain-containing protein 93 OS=Rattus norvegicus OX=10116 GN=Ccdc93...	[more]
Q567U6	5.1e-23	31.14	Coiled-coil domain-containing protein 93 OS=Homo sapiens OX=9606 GN=CCDC93 PE=1 ...	[more]

BLAST of Cp4.1LG11g05810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023547315.1	6.98e-185	94.04	coiled-coil domain-containing protein 93 isoform X1 [Cucurbita pepo subsp. pepo]...	[more]
KAG7029776.1	4.47e-181	92.69	Coiled-coil domain-containing protein 93 [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_022929770.1	9.01e-181	93.02	coiled-coil domain-containing protein 93 isoform X1 [Cucurbita moschata] >XP_022...	[more]
XP_022997448.1	9.98e-178	92.03	coiled-coil domain-containing protein 93 isoform X1 [Cucurbita maxima] >XP_02299...	[more]
XP_023547319.1	3.18e-172	93.31	coiled-coil domain-containing protein 93 isoform X3 [Cucurbita pepo subsp. pepo]...	[more]

BLAST of Cp4.1LG11g05810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EP31	4.36e-181	93.02	coiled-coil domain-containing protein 93 isoform X1 OS=Cucurbita moschata OX=366...	[more]
A0A6J1KBC9	4.83e-178	92.03	coiled-coil domain-containing protein 93 isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1EPR3	1.98e-168	92.23	coiled-coil domain-containing protein 93 isoform X2 OS=Cucurbita moschata OX=366...	[more]
A0A6J1K9N9	2.20e-165	91.17	coiled-coil domain-containing protein 93 isoform X2 OS=Cucurbita maxima OX=3661 ...	[more]
A0A1S3BCQ6	3.97e-146	84.67	coiled-coil domain-containing protein 93 isoform X3 OS=Cucumis melo OX=3656 GN=L...	[more]

BLAST of Cp4.1LG11g05810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32560.1	2.3e-63	52.27	paramyosin-related	[more]
AT4G32560.2	2.3e-63	52.27	paramyosin-related	[more]
AT4G32560.3	2.5e-62	51.67	paramyosin-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 311..331
None	No IPR available	COILS	Coil	Coil	coord: 91..118
None	No IPR available	PANTHER	PTHR16441:SF0	COILED-COIL DOMAIN-CONTAINING PROTEIN 93	coord: 88..357
IPR039116	Coiled-coil domain-containing protein 93	PANTHER	PTHR16441	FIDIPIDINE	coord: 88..357

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g05810.1	Cp4.1LG11g05810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003714	transcription corepressor activity