Cp4.1LG11g03670 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g03670
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Transmembrane protein, putative
Location	Cp4.1LG11: 2006736 .. 2007104 (+)
RNA-Seq Expression	Cp4.1LG11g03670
Synteny	Cp4.1LG11g03670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACAGCTCGGGAGTGCGAGCCCGCCGACGCAAATTTCTAAATCGGCGTCGGAAAGGAAATTAACCCATATGAAAAGTATGAACGTTAATGTTCCGAGAAGCCTGTCGGTGGCGCGGCACAATTTAGACGATGGGCGGCATAAGAAAAAGGATAAGATTAAAGGGGAAGATTCGATTTGGACGAAGACCATAATTTTAGGGGAGAAATGCAAAGTTACAGATGAAGAAGATGGCATTATTTATGAAGGAAAAGGGAAGAAGATATCGGCGTATCATCCGAGAGCTCCGAGTTCGATGTCGGCGTCGCTTTCTAGGCAAGGATCCGCCATTGATGCGGAAGCTCTGCCCAGCCCAGAAGATAAGTAG

mRNA sequence

ATGCAACAGCTCGGGAGTGCGAGCCCGCCGACGCAAATTTCTAAATCGGCGTCGGAAAGGAAATTAACCCATATGAAAAGTATGAACGTTAATGTTCCGAGAAGCCTGTCGGTGGCGCGGCACAATTTAGACGATGGGCGGCATAAGAAAAAGGATAAGATTAAAGGGGAAGATTCGATTTGGACGAAGACCATAATTTTAGGGGAGAAATGCAAAGTTACAGATGAAGAAGATGGCATTATTTATGAAGGAAAAGGGAAGAAGATATCGGCGTATCATCCGAGAGCTCCGAGTTCGATGTCGGCGTCGCTTTCTAGGCAAGGATCCGCCATTGATGCGGAAGCTCTGCCCAGCCCAGAAGATAAGTAG

Coding sequence (CDS)

ATGCAACAGCTCGGGAGTGCGAGCCCGCCGACGCAAATTTCTAAATCGGCGTCGGAAAGGAAATTAACCCATATGAAAAGTATGAACGTTAATGTTCCGAGAAGCCTGTCGGTGGCGCGGCACAATTTAGACGATGGGCGGCATAAGAAAAAGGATAAGATTAAAGGGGAAGATTCGATTTGGACGAAGACCATAATTTTAGGGGAGAAATGCAAAGTTACAGATGAAGAAGATGGCATTATTTATGAAGGAAAAGGGAAGAAGATATCGGCGTATCATCCGAGAGCTCCGAGTTCGATGTCGGCGTCGCTTTCTAGGCAAGGATCCGCCATTGATGCGGAAGCTCTGCCCAGCCCAGAAGATAAGTAG

Protein sequence

MQQLGSASPPTQISKSASERKLTHMKSMNVNVPRSLSVARHNLDDGRHKKKDKIKGEDSIWTKTIILGEKCKVTDEEDGIIYEGKGKKISAYHPRAPSSMSASLSRQGSAIDAEALPSPEDK

Homology

[Close]

BLAST of Cp4.1LG11g03670 vs. NCBI nr
Match: KAG6598610.1 (hypothetical protein SDJN03_08388, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029546.1 hypothetical protein SDJN02_07885, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238 bits (606), Expect = 1.74e-77
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MQQLGSASPPTQISKSASERKLTHMKSMNVNVPRSLSVARHNLDDGRHKKKDKIKGEDSI 60
           MQQLGSASPPTQISKSASERKLTHMKSMNVNVPRSLSVARHNLDDGRHKKKDKIKGEDSI
Sbjct: 93  MQQLGSASPPTQISKSASERKLTHMKSMNVNVPRSLSVARHNLDDGRHKKKDKIKGEDSI 152

Query: 61  WTKTIILGEKCKVTDEEDGIIYEGKGKKISAYHPRAPSSMSASLSRQGSAIDAEALPSPE 120
           WTKTIILGEKCKVTDEEDGIIYEGKGKKISAYHPRAPSSMSASLSRQGSAIDAEALPSPE
Sbjct: 153 WTKTIILGEKCKVTDEEDGIIYEGKGKKISAYHPRAPSSMSASLSRQGSAIDAEALPSPE 212

Query: 121 DK 122
           DK
Sbjct: 213 DK 214

[Close]

BLAST of Cp4.1LG11g03670 vs. NCBI nr
Match: KGN47811.2 (hypothetical protein Csa_018925 [Cucumis sativus])

HSP 1 Score: 189 bits (479), Expect = 4.04e-58
Identity = 94/122 (77.05%), Postives = 111/122 (90.98%), Query Frame = 0


Query: 1   MQQLGSASPPTQISKSASERKLTHMKSMNVNVPRSLSVARHNLDDGRHKKKDKIKGEDSI 60
           MQQ+ S SPP+QISKSASERKL HM+SM++ VPRSLSV R++LD+GR ++K++IKGEDSI
Sbjct: 97  MQQVASTSPPSQISKSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKERIKGEDSI 156

Query: 61  WTKTIILGEKCKVTDEEDGIIYEGKGKKISAYHPRAPSSMSASLSRQGSAIDAEALPSPE 120
           WTKTIILGEKCKV+DEEDGIIYEGKGKKI+AYHPRAPSSMS S+SRQ SA++AEAL S E
Sbjct: 157 WTKTIILGEKCKVSDEEDGIIYEGKGKKITAYHPRAPSSMSISMSRQNSAVEAEALQSSE 216

Query: 121 DK 122
            K
Sbjct: 217 AK 218

[Close]

BLAST of Cp4.1LG11g03670 vs. NCBI nr
Match: KAA0064730.1 (putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 186 bits (473), Expect = 3.61e-57
Identity = 94/122 (77.05%), Postives = 110/122 (90.16%), Query Frame = 0


Query: 1   MQQLGSASPPTQISKSASERKLTHMKSMNVNVPRSLSVARHNLDDGRHKKKDKIKGEDSI 60
           MQQ+ S+SPP QI KSASERKL HM+SM++ VPRSLSV R++LD+GR ++K+KIKGEDSI
Sbjct: 100 MQQVTSSSPPNQILKSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKEKIKGEDSI 159

Query: 61  WTKTIILGEKCKVTDEEDGIIYEGKGKKISAYHPRAPSSMSASLSRQGSAIDAEALPSPE 120
           WTKTIILGEKCKV+DEEDGIIYEGKGKKI+AYHPRAPSSMS S+SRQ SA +AEALP+ E
Sbjct: 160 WTKTIILGEKCKVSDEEDGIIYEGKGKKITAYHPRAPSSMSISMSRQNSANEAEALPNSE 219

Query: 121 DK 122
            K
Sbjct: 220 AK 221

[Close]

BLAST of Cp4.1LG11g03670 vs. NCBI nr
Match: XP_023002698.1 (uncharacterized protein LOC111496482 [Cucurbita maxima])

HSP 1 Score: 167 bits (423), Expect = 2.28e-49
Identity = 83/117 (70.94%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1   MQQLGSASPPTQISKSASERKLTHMKSMNVNVPRSLSVARHNLDDGRHKKKDKIKGEDSI 60
           MQQ+ S SPP+QI+KSASER+L HM  MN+ VPRS SVAR +L++G  ++K+K+K E+ I
Sbjct: 117 MQQVASPSPPSQIAKSASERRLKHMTGMNMEVPRSHSVARKDLEEGGERRKEKMKEEELI 176

Query: 61  WTKTIILGEKCKVTDEEDGIIYEGKGKKISAYHPRAPSSMSASLSRQGSAIDAEALP 117
           W KTIILGEKC+V+DEEDG+IYEGKGK+ISAYHPR+PSSMS S+SRQ SAIDAEALP
Sbjct: 177 WKKTIILGEKCRVSDEEDGVIYEGKGKRISAYHPRSPSSMSISISRQSSAIDAEALP 233

[Close]

BLAST of Cp4.1LG11g03670 vs. NCBI nr
Match: KAG6585751.1 (hypothetical protein SDJN03_18484, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162 bits (410), Expect = 7.55e-48
Identity = 81/117 (69.23%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1   MQQLGSASPPTQISKSASERKLTHMKSMNVNVPRSLSVARHNLDDGRHKKKDKIKGEDSI 60
           MQQ+ S SPP++I+KSASER+L HM S+N+ VPRS SVAR +L++G  ++K+K+  E+ I
Sbjct: 82  MQQVASPSPPSKIAKSASERRLKHMTSLNMKVPRSHSVARKDLEEGGGRRKEKMIEEELI 141

Query: 61  WTKTIILGEKCKVTDEEDGIIYEGKGKKISAYHPRAPSSMSASLSRQGSAIDAEALP 117
           W KTIILGEKC+V+DEEDG+IYEGKGK+ISAYHPR+PSSMS S+SRQ SAIDAEALP
Sbjct: 142 WQKTIILGEKCRVSDEEDGVIYEGKGKRISAYHPRSPSSMSISISRQSSAIDAEALP 198

[Close]

BLAST of Cp4.1LG11g03670 vs. ExPASy TrEMBL
Match: A0A0A0KD46 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G364120 PE=4 SV=1)

HSP 1 Score: 189 bits (479), Expect = 7.39e-59
Identity = 94/122 (77.05%), Postives = 111/122 (90.98%), Query Frame = 0


Query: 1   MQQLGSASPPTQISKSASERKLTHMKSMNVNVPRSLSVARHNLDDGRHKKKDKIKGEDSI 60
           MQQ+ S SPP+QISKSASERKL HM+SM++ VPRSLSV R++LD+GR ++K++IKGEDSI
Sbjct: 66  MQQVASTSPPSQISKSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKERIKGEDSI 125

Query: 61  WTKTIILGEKCKVTDEEDGIIYEGKGKKISAYHPRAPSSMSASLSRQGSAIDAEALPSPE 120
           WTKTIILGEKCKV+DEEDGIIYEGKGKKI+AYHPRAPSSMS S+SRQ SA++AEAL S E
Sbjct: 126 WTKTIILGEKCKVSDEEDGIIYEGKGKKITAYHPRAPSSMSISMSRQNSAVEAEALQSSE 185

Query: 121 DK 122
            K
Sbjct: 186 AK 187

[Close]

BLAST of Cp4.1LG11g03670 vs. ExPASy TrEMBL
Match: A0A5A7VC31 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00340 PE=4 SV=1)

HSP 1 Score: 186 bits (473), Expect = 1.75e-57
Identity = 94/122 (77.05%), Postives = 110/122 (90.16%), Query Frame = 0


Query: 1   MQQLGSASPPTQISKSASERKLTHMKSMNVNVPRSLSVARHNLDDGRHKKKDKIKGEDSI 60
           MQQ+ S+SPP QI KSASERKL HM+SM++ VPRSLSV R++LD+GR ++K+KIKGEDSI
Sbjct: 100 MQQVTSSSPPNQILKSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKEKIKGEDSI 159

Query: 61  WTKTIILGEKCKVTDEEDGIIYEGKGKKISAYHPRAPSSMSASLSRQGSAIDAEALPSPE 120
           WTKTIILGEKCKV+DEEDGIIYEGKGKKI+AYHPRAPSSMS S+SRQ SA +AEALP+ E
Sbjct: 160 WTKTIILGEKCKVSDEEDGIIYEGKGKKITAYHPRAPSSMSISMSRQNSANEAEALPNSE 219

Query: 121 DK 122
            K
Sbjct: 220 AK 221

[Close]

BLAST of Cp4.1LG11g03670 vs. ExPASy TrEMBL
Match: A0A6J1KUB9 (uncharacterized protein LOC111496482 OS=Cucurbita maxima OX=3661 GN=LOC111496482 PE=4 SV=1)

HSP 1 Score: 167 bits (423), Expect = 1.10e-49
Identity = 83/117 (70.94%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1   MQQLGSASPPTQISKSASERKLTHMKSMNVNVPRSLSVARHNLDDGRHKKKDKIKGEDSI 60
           MQQ+ S SPP+QI+KSASER+L HM  MN+ VPRS SVAR +L++G  ++K+K+K E+ I
Sbjct: 117 MQQVASPSPPSQIAKSASERRLKHMTGMNMEVPRSHSVARKDLEEGGERRKEKMKEEELI 176

Query: 61  WTKTIILGEKCKVTDEEDGIIYEGKGKKISAYHPRAPSSMSASLSRQGSAIDAEALP 117
           W KTIILGEKC+V+DEEDG+IYEGKGK+ISAYHPR+PSSMS S+SRQ SAIDAEALP
Sbjct: 177 WKKTIILGEKCRVSDEEDGVIYEGKGKRISAYHPRSPSSMSISISRQSSAIDAEALP 233

[Close]

BLAST of Cp4.1LG11g03670 vs. ExPASy TrEMBL
Match: A0A5N5MD42 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_010421 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 1.17e-28
Identity = 62/111 (55.86%), Postives = 84/111 (75.68%), Query Frame = 0


Query: 13  ISKSASERKLTHM--KSMNVNVPRSLSVARHNLDDGRH-KKKDKIKGEDSIWTKTIILGE 72
           I KSAS R L+ M  K++++ +PRS+S+AR + DD ++ KKK K+K EDS+W KTIILGE
Sbjct: 105 IKKSASTRSLSSMSMKAISMKLPRSMSMARKDGDDRKNQKKKGKLKHEDSVWMKTIILGE 164

Query: 73  KCKVTDEEDGIIYEGKGKKISAYHPRAPSSMSASLSRQGSAIDAEALPSPE 120
           KCKV DE++ +IY+GKGK+IS YH +A SS S  +SRQ S ID  A+PS +
Sbjct: 165 KCKVPDEDEAVIYDGKGKRISTYHKKASSSFSV-MSRQNSQIDINAIPSQD 214

[Close]

BLAST of Cp4.1LG11g03670 vs. ExPASy TrEMBL
Match: A0A6A6KDV5 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_037122 PE=4 SV=1)

HSP 1 Score: 107 bits (267), Expect = 2.05e-26
Identity = 55/109 (50.46%), Postives = 80/109 (73.39%), Query Frame = 0


Query: 13  ISKSASERKLTHMKSMNVNVPRSLSVARHNLDDGR-HKKKDKIKGEDSIWTKTIILGEKC 72
           ++KS S R +   K+M++ +PR++S+AR + +D    KKK K+K EDS+W KTIILGEKC
Sbjct: 99  LTKSMSTRNIG--KNMSLKIPRTMSMARRDREDKNIQKKKGKLKHEDSVWMKTIILGEKC 158

Query: 73  KVTDEEDGIIYEGKGKKISAYHPRAPSSMSASLSRQGSAIDAEALPSPE 120
           KV DE++ +IY+GKG +IS YHP+ P S+S  +SRQ S +D  A+PS +
Sbjct: 159 KVPDEDEPVIYDGKGNRISTYHPKLPGSLS--ISRQNSFVDVNAIPSQQ 203

[Close]

BLAST of Cp4.1LG11g03670 vs. TAIR 10
Match: AT5G26114.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 8.3e-05
Identity = 28/81 (34.57%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 38  VARHNLDDGRHKKKDKIKGEDSIWTKTIILGEKCKVTDEEDGIIYEGKGKKISAYHPRAP 97
           V + + ++ +  +K K+  ++SI    IILGE+C+V D E+G   E + ++++      P
Sbjct: 2   VLKRDKEEDKSVRKKKLNADNSILVLPIILGERCRVLDAEEG--DEDQSQRMAENRIYRP 61

Query: 98  SSMSA-SLSRQGSAIDAEALP 118
            SMS+ S+SR  S ID  A+P
Sbjct: 62  RSMSSISISRTKSNIDMNAIP 80

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g03670 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g03670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598610.1	1.74e-77	100.00	hypothetical protein SDJN03_08388, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN47811.2	4.04e-58	77.05	hypothetical protein Csa_018925 [Cucumis sativus]	[more]
KAA0064730.1	3.61e-57	77.05	putative transmembrane protein [Cucumis melo var. makuwa]	[more]
XP_023002698.1	2.28e-49	70.94	uncharacterized protein LOC111496482 [Cucurbita maxima]	[more]
KAG6585751.1	7.55e-48	69.23	hypothetical protein SDJN03_18484, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG11g03670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD46	7.39e-59	77.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G364120 PE=4 SV=1	[more]
A0A5A7VC31	1.75e-57	77.05	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A6J1KUB9	1.10e-49	70.94	uncharacterized protein LOC111496482 OS=Cucurbita maxima OX=3661 GN=LOC111496482...	[more]
A0A5N5MD42	1.17e-28	55.86	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_010421 PE=4 SV=1	[more]
A0A6A6KDV5	2.05e-26	50.46	Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_037122 PE=4 SV=1	[more]

BLAST of Cp4.1LG11g03670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26114.1	8.3e-05	34.57	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR36801:SF3	OS06G0150200 PROTEIN	coord: 1..121
None	No IPR available	PANTHER	PTHR36801	OS06G0150200 PROTEIN	coord: 1..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g03670.1	Cp4.1LG11g03670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity