Cp4.1LG11g03620 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g03620
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Nuclear transcription factor Y subunit C
Location	Cp4.1LG11: 2009655 .. 2010077 (+)
RNA-Seq Expression	Cp4.1LG11g03620
Synteny	Cp4.1LG11g03620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAAAAGGAATCCGGAGAGGCTATCCGGCCGGAATTTCCGATGGGGCGAATAAAGAAGATAATGAAGCTGGACAAGGACATTGGTAAAGTGAATTCAGAAGCGCTGTTTTTAGTCTCATGCGCCACTGAGCTTTTCCTTGAGCTTCTCGCTGAAAAATCTTCCGAAGTCGCCGCCGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAATCGCCGTCAAAAGGCATCAATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCTTCTCAGCCGTCGGATGCTCCGGCGAAGGACGAGAATCGCACTCGCGTTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGCCGAATCGATGATTTCTTTCGCCGGCCAGCGAAGACCGCGTCCGCGGAGATCAACGAGACATAG

mRNA sequence

ATGGCAGAAAAGGAATCCGGAGAGGCTATCCGGCCGGAATTTCCGATGGGGCGAATAAAGAAGATAATGAAGCTGGACAAGGACATTGGTAAAGTGAATTCAGAAGCGCTGTTTTTAGTCTCATGCGCCACTGAGCTTTTCCTTGAGCTTCTCGCTGAAAAATCTTCCGAAGTCGCCGCCGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAATCGCCGTCAAAAGGCATCAATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCTTCTCAGCCGTCGGATGCTCCGGCGAAGGACGAGAATCGCACTCGCGTTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGCCGAATCGATGATTTCTTTCGCCGGCCAGCGAAGACCGCGTCCGCGGAGATCAACGAGACATAG

Coding sequence (CDS)

ATGGCAGAAAAGGAATCCGGAGAGGCTATCCGGCCGGAATTTCCGATGGGGCGAATAAAGAAGATAATGAAGCTGGACAAGGACATTGGTAAAGTGAATTCAGAAGCGCTGTTTTTAGTCTCATGCGCCACTGAGCTTTTCCTTGAGCTTCTCGCTGAAAAATCTTCCGAAGTCGCCGCCGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAATCGCCGTCAAAAGGCATCAATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCTTCTCAGCCGTCGGATGCTCCGGCGAAGGACGAGAATCGCACTCGCGTTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGCCGAATCGATGATTTCTTTCGCCGGCCAGCGAAGACCGCGTCCGCGGAGATCAACGAGACATAG

Protein sequence

MAEKESGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAEINET

Homology

[Close]

BLAST of Cp4.1LG11g03620 vs. ExPASy Swiss-Prot
Match: B0XTT5 (NCT transcriptional regulatory complex subunit A OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=nctA PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-07
Identity = 38/116 (32.76%), Postives = 63/116 (54.31%), Query Frame = 0


Query: 10  IRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKL 69
           ++ +FP+ RIK+IM+ D+D+GKV       VS A ELF+  L  K+++ A ++  K V  
Sbjct: 130 VKTKFPVARIKRIMQADEDVGKVAQVTPIAVSKALELFMISLVTKAAKEARDRNSKRVTA 189

Query: 70  EHIRIAVKRHQSISDFLLDSL-PLPSQPSDAPAKDENRTRVVVDKVAPEGTRRIDD 125
            H++ AV + + + DFL D +  +P QP+     D++ +          G RR  D
Sbjct: 190 THLKQAVVKDE-VLDFLADIIAKVPDQPAGGRKHDDDGSDQNEQPKRKRGGRRPKD 244

[Close]

BLAST of Cp4.1LG11g03620 vs. ExPASy Swiss-Prot
Match: Q4X095 (NCT transcriptional regulatory complex subunit A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=nctA PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-07
Identity = 38/116 (32.76%), Postives = 63/116 (54.31%), Query Frame = 0


Query: 10  IRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKL 69
           ++ +FP+ RIK+IM+ D+D+GKV       VS A ELF+  L  K+++ A ++  K V  
Sbjct: 130 VKTKFPVARIKRIMQADEDVGKVAQVTPIAVSKALELFMISLVTKAAKEARDRNSKRVTA 189

Query: 70  EHIRIAVKRHQSISDFLLDSL-PLPSQPSDAPAKDENRTRVVVDKVAPEGTRRIDD 125
            H++ AV + + + DFL D +  +P QP+     D++ +          G RR  D
Sbjct: 190 THLKQAVVKDE-VLDFLADIIAKVPDQPAGGRKHDDDGSDQNEQPKRKRGGRRPKD 244

[Close]

BLAST of Cp4.1LG11g03620 vs. ExPASy Swiss-Prot
Match: Q54DA1 (Dr1-associated corepressor homolog OS=Dictyostelium discoideum OX=44689 GN=drap1 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.6e-07
Identity = 29/78 (37.18%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 11 RPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLE 70
          + +FPM RIKKIM+ D+++GK+ S    L+S   ELF+  L  K+ ++   KK K + + 
Sbjct: 6  KTKFPMARIKKIMQKDEEVGKIASATPILISQCLELFMADLVMKTCKITQAKKGKVISVN 65

Query: 71 HIRIAVKRHQSISDFLLD 89
          H++  +K+ +S  DFL +
Sbjct: 66 HLKECIKQ-ESTFDFLTE 82

[Close]

BLAST of Cp4.1LG11g03620 vs. ExPASy Swiss-Prot
Match: Q2YDP3 (Dr1-associated corepressor OS=Bos taurus OX=9913 GN=DRAP1 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.4e-07
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 14 FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIR 73
          FP  RIKKIM+ D++IGKV +    ++S A ELFLE L +K+ +V   +  KT+   H++
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71

Query: 74 IAVKRHQSISDFLLD 89
            ++  Q   DFL D
Sbjct: 72 QCIELEQQF-DFLKD 85

[Close]

BLAST of Cp4.1LG11g03620 vs. ExPASy Swiss-Prot
Match: Q14919 (Dr1-associated corepressor OS=Homo sapiens OX=9606 GN=DRAP1 PE=1 SV=3)

HSP 1 Score: 56.2 bits (134), Expect = 3.4e-07
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 14 FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIR 73
          FP  RIKKIM+ D++IGKV +    ++S A ELFLE L +K+ +V   +  KT+   H++
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71

Query: 74 IAVKRHQSISDFLLD 89
            ++  Q   DFL D
Sbjct: 72 QCIELEQQF-DFLKD 85

[Close]

BLAST of Cp4.1LG11g03620 vs. NCBI nr
Match: XP_023547243.1 (putative transcription factor C16C4.22 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270 bits (689), Expect = 6.82e-91
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MAEKESGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           MAEKESGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA
Sbjct: 1   MAEKESGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTASAEINET 140
           RIDDFFRRPAKTASAEINET
Sbjct: 121 RIDDFFRRPAKTASAEINET 140

[Close]

BLAST of Cp4.1LG11g03620 vs. NCBI nr
Match: XP_022997291.1 (DNA polymerase epsilon subunit C [Cucurbita maxima])

HSP 1 Score: 261 bits (667), Expect = 1.54e-87
Identity = 135/140 (96.43%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MAEKESGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           MAE+E GEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKS+EVAA
Sbjct: 1   MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTASAEINET 140
           RIDDFFRRP KTASAE NET
Sbjct: 121 RIDDFFRRPEKTASAETNET 140

[Close]

BLAST of Cp4.1LG11g03620 vs. NCBI nr
Match: XP_022962477.1 (DNA polymerase epsilon subunit C [Cucurbita moschata])

HSP 1 Score: 261 bits (666), Expect = 2.19e-87
Identity = 135/140 (96.43%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MAEKESGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           MAE+E GEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA
Sbjct: 1   MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIRIAVKRHQSI DFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTASAEINET 140
           RIDDFFRRP KTASAE NET
Sbjct: 121 RIDDFFRRPEKTASAETNET 140

[Close]

BLAST of Cp4.1LG11g03620 vs. NCBI nr
Match: KAG6598611.1 (Dr1-associated corepressor, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029547.1 Dr1-associated corepressor, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 259 bits (663), Expect = 6.29e-87
Identity = 135/140 (96.43%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MAEKESGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           MAE+E G+AIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA
Sbjct: 1   MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAK ENRTRVVVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTASAEINET 140
           RIDDFFRRPAKTASAE NET
Sbjct: 121 RIDDFFRRPAKTASAETNET 140

[Close]

BLAST of Cp4.1LG11g03620 vs. NCBI nr
Match: XP_038884228.1 (NCT transcriptional regulatory complex subunit A [Benincasa hispida])

HSP 1 Score: 246 bits (628), Expect = 1.37e-81
Identity = 126/140 (90.00%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MAEKESGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           MAE+ESG+AIRPEFP GR+KKIMKLDKDI KVNSEALFLVSCATELFL+LLAEKS+EVAA
Sbjct: 1   MAEEESGDAIRPEFPTGRVKKIMKLDKDIEKVNSEALFLVSCATELFLKLLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIRIAVKRH+SISDFLLDSLPLP QPSDAPAKDENRTR VVDKV PEGTR
Sbjct: 61  EKKRKTVKLEHIRIAVKRHRSISDFLLDSLPLPPQPSDAPAKDENRTRTVVDKVVPEGTR 120

Query: 121 RIDDFFRRPAKTASAEINET 140
           RIDDFFRRPAKT SAE NE+
Sbjct: 121 RIDDFFRRPAKTTSAENNES 140

[Close]

BLAST of Cp4.1LG11g03620 vs. ExPASy TrEMBL
Match: A0A6J1K737 (DNA polymerase epsilon subunit C OS=Cucurbita maxima OX=3661 GN=LOC111492238 PE=4 SV=1)

HSP 1 Score: 261 bits (667), Expect = 7.48e-88
Identity = 135/140 (96.43%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MAEKESGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           MAE+E GEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKS+EVAA
Sbjct: 1   MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTASAEINET 140
           RIDDFFRRP KTASAE NET
Sbjct: 121 RIDDFFRRPEKTASAETNET 140

[Close]

BLAST of Cp4.1LG11g03620 vs. ExPASy TrEMBL
Match: A0A6J1HCT3 (DNA polymerase epsilon subunit C OS=Cucurbita moschata OX=3662 GN=LOC111462901 PE=4 SV=1)

HSP 1 Score: 261 bits (666), Expect = 1.06e-87
Identity = 135/140 (96.43%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MAEKESGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           MAE+E GEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA
Sbjct: 1   MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIRIAVKRHQSI DFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTASAEINET 140
           RIDDFFRRP KTASAE NET
Sbjct: 121 RIDDFFRRPEKTASAETNET 140

[Close]

BLAST of Cp4.1LG11g03620 vs. ExPASy TrEMBL
Match: A0A5A7VG98 (Dr1-associated corepressor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00350 PE=4 SV=1)

HSP 1 Score: 244 bits (624), Expect = 2.70e-81
Identity = 124/140 (88.57%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MAEKESGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           M E+ESGEAIRPEFP GR+KKIMKLDKDIGKVNSEALF+VSCATELFL+LLAEKS+EVAA
Sbjct: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDAPAKDENR R VVDKVAP GTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRIRAVVDKVAPAGTR 120

Query: 121 RIDDFFRRPAKTASAEINET 140
           RIDDFFRRP KT SAE NE+
Sbjct: 121 RIDDFFRRPTKTTSAETNES 140

[Close]

BLAST of Cp4.1LG11g03620 vs. ExPASy TrEMBL
Match: A0A1S3BDL4 (dr1-associated corepressor OS=Cucumis melo OX=3656 GN=LOC103488501 PE=4 SV=1)

HSP 1 Score: 242 bits (618), Expect = 2.22e-80
Identity = 124/140 (88.57%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 1   MAEKESGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           M E+ESGEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+EVAA
Sbjct: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDA AKDENR R VVDKVAP GTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDASAKDENRIRAVVDKVAPAGTR 120

Query: 121 RIDDFFRRPAKTASAEINET 140
           RIDDFFRRP KT SAE NE+
Sbjct: 121 RIDDFFRRPTKTTSAETNES 140

[Close]

BLAST of Cp4.1LG11g03620 vs. ExPASy TrEMBL
Match: A0A0A0KGV1 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G365140 PE=4 SV=1)

HSP 1 Score: 237 bits (605), Expect = 2.06e-78
Identity = 122/136 (89.71%), Postives = 128/136 (94.12%), Query Frame = 0


Query: 1   MAEKESGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           M E+E GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+E AA
Sbjct: 1   MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDAPAKDENRTR VVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTASAE 136
           RIDDFFRR  KT SAE
Sbjct: 121 RIDDFFRRSTKTKSAE 136

[Close]

BLAST of Cp4.1LG11g03620 vs. TAIR 10
Match: AT5G43250.1 (nuclear factor Y, subunit C13 )

HSP 1 Score: 151.8 bits (382), Expect = 4.2e-37
Identity = 88/137 (64.23%), Postives = 103/137 (75.18%), Query Frame = 0


Query: 3   EKESGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEK 62
           E+E G +IRPEFP+GR+KKIMKLDKDI K+NSEAL +++ +TELFL  LAEKS+ V AEK
Sbjct: 2   EEEEG-SIRPEFPIGRVKKIMKLDKDINKINSEALHVITYSTELFLHFLAEKSAVVTAEK 61

Query: 63  KRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDK---VAPEGT 122
           KRKTV L+H+RIAVKRHQ  SDFLLDSLPLP+QP          T+ V DK     P GT
Sbjct: 62  KRKTVNLDHLRIAVKRHQPTSDFLLDSLPLPAQP-------VKHTKSVSDKKIPAPPIGT 121

Query: 123 RRIDDFFRR-PAKTASA 136
           RRIDDFF +  AKT SA
Sbjct: 122 RRIDDFFSKGKAKTDSA 130

[Close]

BLAST of Cp4.1LG11g03620 vs. TAIR 10
Match: AT1G07980.1 (nuclear factor Y, subunit C10 )

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-08
Identity = 31/91 (34.07%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 3   EKESG--EAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 62
           E++ G  E  + +FPM RI++IM+ D    ++  +A+FLV+ ATE+F+E  +E++ + + 
Sbjct: 97  EEDDGGAEDAKIKFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYDSSV 156

Query: 63  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLP 92
           + K+K +  +H+   V   Q   +FL DS+P
Sbjct: 157 KDKKKFIHYKHLSSVVSNDQRY-EFLADSVP 186

[Close]

BLAST of Cp4.1LG11g03620 vs. TAIR 10
Match: AT3G12480.1 (nuclear factor Y, subunit C11 )

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-08
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 14 FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIR 73
          FP  RIKKIM+ D+D+GK+      LVS + ELFL+ L +++ E+  E+  KTV   H++
Sbjct: 9  FPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLK 68

Query: 74 IAVKRHQSISDFL 87
            V+R+ ++ DFL
Sbjct: 69 HCVERY-NVFDFL 80

[Close]

BLAST of Cp4.1LG11g03620 vs. TAIR 10
Match: AT3G48590.1 (nuclear factor Y, subunit C1 )

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 13  EFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHI 72
           + P+ RIKKIMK D+D+  +++EA  L + A ELF+  L  +S   A E KR+T++   I
Sbjct: 65  QLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDI 124

Query: 73  RIAVKRHQSISDFLLDSLP 92
             A+ R   I DFL+D +P
Sbjct: 125 AAAITR-TDIFDFLVDIVP 142

[Close]

BLAST of Cp4.1LG11g03620 vs. TAIR 10
Match: AT5G63470.1 (nuclear factor Y, subunit C4 )

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 13  EFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHI 72
           + P+ RIKKIMK D+D+  +++EA  L + A ELF+  L  +S   A E KR+T++   I
Sbjct: 78  QLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDI 137

Query: 73  RIAVKRHQSISDFLLDSLP 92
             A+ R   I DFL+D +P
Sbjct: 138 AAAITR-TDIFDFLVDIVP 155

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g03620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B0XTT5	1.5e-07	32.76	NCT transcriptional regulatory complex subunit A OS=Neosartorya fumigata (strain...	[more]
Q4X095	1.5e-07	32.76	NCT transcriptional regulatory complex subunit A OS=Neosartorya fumigata (strain...	[more]
Q54DA1	2.6e-07	37.18	Dr1-associated corepressor homolog OS=Dictyostelium discoideum OX=44689 GN=drap1...	[more]
Q2YDP3	3.4e-07	41.33	Dr1-associated corepressor OS=Bos taurus OX=9913 GN=DRAP1 PE=2 SV=1	[more]
Q14919	3.4e-07	41.33	Dr1-associated corepressor OS=Homo sapiens OX=9606 GN=DRAP1 PE=1 SV=3	[more]

BLAST of Cp4.1LG11g03620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023547243.1	6.82e-91	100.00	putative transcription factor C16C4.22 [Cucurbita pepo subsp. pepo]	[more]
XP_022997291.1	1.54e-87	96.43	DNA polymerase epsilon subunit C [Cucurbita maxima]	[more]
XP_022962477.1	2.19e-87	96.43	DNA polymerase epsilon subunit C [Cucurbita moschata]	[more]
KAG6598611.1	6.29e-87	96.43	Dr1-associated corepressor, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]
XP_038884228.1	1.37e-81	90.00	NCT transcriptional regulatory complex subunit A [Benincasa hispida]	[more]

BLAST of Cp4.1LG11g03620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K737	7.48e-88	96.43	DNA polymerase epsilon subunit C OS=Cucurbita maxima OX=3661 GN=LOC111492238 PE=...	[more]
A0A6J1HCT3	1.06e-87	96.43	DNA polymerase epsilon subunit C OS=Cucurbita moschata OX=3662 GN=LOC111462901 P...	[more]
A0A5A7VG98	2.70e-81	88.57	Dr1-associated corepressor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A1S3BDL4	2.22e-80	88.57	dr1-associated corepressor OS=Cucumis melo OX=3656 GN=LOC103488501 PE=4 SV=1	[more]
A0A0A0KGV1	2.06e-78	89.71	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G3651...	[more]

BLAST of Cp4.1LG11g03620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43250.1	4.2e-37	64.23	nuclear factor Y, subunit C13	[more]
AT1G07980.1	1.4e-08	34.07	nuclear factor Y, subunit C10	[more]
AT3G12480.1	1.8e-08	42.47	nuclear factor Y, subunit C11	[more]
AT3G48590.1	1.2e-07	41.77	nuclear factor Y, subunit C1	[more]
AT5G63470.1	1.2e-07	41.77	nuclear factor Y, subunit C4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 13..76 e-value: 3.8E-21 score: 75.1
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 1..91 e-value: 6.3E-24 score: 86.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 12..91
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 3..128
None	No IPR available	PANTHER	PTHR10252:SF95	NUCLEAR FACTOR Y, SUBUNIT C13	coord: 3..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g03620.1	Cp4.1LG11g03620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity