Cp4.1LG11g03340 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG11g03340
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionFlotillin-like
LocationCp4.1LG11: 1697482 .. 1697931 (-)
RNA-Seq ExpressionCp4.1LG11g03340
SyntenyCp4.1LG11g03340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTACTTGTTTTGGTGTATCAATTCAAAAAATGTGTCAATTCCAAAGCAATTTATAAGCTTTTTTTTATTTTGGGTGGTTTCCAATTTCTTTGGAGTAAATAATGTTATCTATTTTGGGTGTTTTCCAATTTCTTTGGAGTAAACAATGTTGTCTTTTTTCTTGTTTTGTTTTGTGGATTTTCAGTGTACTTTTGGTTGTTTCTGTATTTTTAATGTTAGCTTTTGAACCATTTTTTAAAAATTATGAATTATCAACCACAACCAAGATTGGAACCTAACTGGAATCACCTTCGATCTCACTCTGATCAACTACACCTTTGAAGTTGAAGCCATGAGAGCCGAGAAGCACCCCGCCGTCTTCACCATTGGCCCCCGCTCCAAATACATGGATAGCCTCCTCAAGAATTCCAAGTTCTCTATTGAGGACGAGACCCGAGCGATTTAG

mRNA sequence

ATGGATTGGAACCTAACTGGAATCACCTTCGATCTCACTCTGATCAACTACACCTTTGAAGTTGAAGCCATGAGAGCCGAGAAGCACCCCGCCGTCTTCACCATTGGCCCCCGCTCCAAATACATGGATAGCCTCCTCAAGAATTCCAAGTTCTCTATTGAGGACGAGACCCGAGCGATTTAG

Coding sequence (CDS)

ATGGATTGGAACCTAACTGGAATCACCTTCGATCTCACTCTGATCAACTACACCTTTGAAGTTGAAGCCATGAGAGCCGAGAAGCACCCCGCCGTCTTCACCATTGGCCCCCGCTCCAAATACATGGATAGCCTCCTCAAGAATTCCAAGTTCTCTATTGAGGACGAGACCCGAGCGATTTAG

Protein sequence

MDWNLTGITFDLTLINYTFEVEAMRAEKHPAVFTIGPRSKYMDSLLKNSKFSIEDETRAI
Homology
[Close]
BLAST of Cp4.1LG11g03340 vs. ExPASy Swiss-Prot
Match: D2XNR0 (Flotillin-like protein 3 OS=Medicago truncatula OX=3880 GN=FLOT3 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.7e-06
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 10 FDLTLINYTFEVEAMRAEK----HPAVFTIGPRSKYMDSLLKNSK 51
          FDL+ +NYTFEV+AM AEK     PAVFTIGPR    +SLLK +K
Sbjct: 38 FDLSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRVDDQESLLKYAK 82

[Close]
BLAST of Cp4.1LG11g03340 vs. ExPASy Swiss-Prot
Match: D2XNR1 (Flotillin-like protein 4 OS=Medicago truncatula OX=3880 GN=FLOT4 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.7e-06
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 0 

Query: 3  WNLTG---ITFDLTLINYTFEVEAMRAEK----HPAVFTIGPRSKYMDSLLKNSK 51
          W L G     FDL+ +NYTFEV+AM AEK     PAVFTIGPR    +SLLK +K
Sbjct: 28 WILPGQSYSVFDLSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRVDDKESLLKYAK 82

[Close]
BLAST of Cp4.1LG11g03340 vs. ExPASy Swiss-Prot
Match: D2XNQ8 (Flotillin-like protein 1 OS=Medicago truncatula OX=3880 GN=FLOT1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.6e-06
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 10 FDLTLINYTFEVEAMRAEK----HPAVFTIGPRSKYMDSLLKNSK 51
          FDL+ +NYTFEV+AM AEK     PAVFTIGPR    +SLLK +K
Sbjct: 38 FDLSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRVDDYESLLKYAK 82

[Close]
BLAST of Cp4.1LG11g03340 vs. ExPASy Swiss-Prot
Match: Q9AV57 (Flotillin-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=FLOT1 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-05
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 10 FDLTLINYTFEVEAMRAEK----HPAVFTIGPRSKYMDSLLKNSK 51
          FD++ +NYTFEV+AM AEK     PAVFTIGPR+   D LL+ +K
Sbjct: 41 FDISPVNYTFEVQAMSAEKLPFILPAVFTIGPRADDDDCLLRYAK 85

[Close]
BLAST of Cp4.1LG11g03340 vs. ExPASy Swiss-Prot
Match: D2XNQ9 (Flotillin-like protein 2 OS=Medicago truncatula OX=3880 GN=FLOT2 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-05
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 0 

Query: 11 DLTLINYTFEVEAMRAEK----HPAVFTIGPRSKYMDSLLKNSK 51
          DL+ +NYTFEV+AM AEK     PAVFTIGPR    +SLLK +K
Sbjct: 41 DLSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRVDDQESLLKYAK 84

[Close]
BLAST of Cp4.1LG11g03340 vs. NCBI nr
Match: KAF3328004.1 (flotillin-like protein 3 [Carex littledalei])

HSP 1 Score: 58.5 bits (140), Expect = 4.84e-08
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 3  WNLTG---ITFDLTLINYTFEVEAMRAEKHP----AVFTIGPRSKYMDSLLKNSK 50
          W L G   + FD+T +NYTFEV+AM AEK P    AVFTIGPR++ MD+LLK +K
Sbjct: 29 WILPGQRCVRFDMTPVNYTFEVQAMSAEKLPFILPAVFTIGPRTEDMDALLKYAK 83

[Close]
BLAST of Cp4.1LG11g03340 vs. NCBI nr
Match: KGN62970.1 (hypothetical protein Csa_022496 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 1.69e-07
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 3  WNLTGIT---FDLTLINYTFEVEAMRAEKHP----AVFTIGPRSKYMDSLLKNSK 50
          W L G +   FD++ +NYTFEV+AM AEK P    AVFTIGPRS  MDSLLK +K
Sbjct: 28 WVLPGQSCTIFDISPVNYTFEVQAMSAEKLPFILPAVFTIGPRSDDMDSLLKYAK 82

[Close]
BLAST of Cp4.1LG11g03340 vs. NCBI nr
Match: XP_011649835.2 (LOW QUALITY PROTEIN: flotillin-like protein 4 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 1.71e-07
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 3  WNLTGIT---FDLTLINYTFEVEAMRAEKHP----AVFTIGPRSKYMDSLLKNSK 50
          W L G +   FD++ +NYTFEV+AM AEK P    AVFTIGPRS  MDSLLK +K
Sbjct: 28 WVLPGQSCTIFDISPVNYTFEVQAMSAEKLPFILPAVFTIGPRSDDMDSLLKYAK 82

[Close]
BLAST of Cp4.1LG11g03340 vs. NCBI nr
Match: CAA2627773.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 56.2 bits (134), Expect = 3.15e-07
Identity = 36/72 (50.00%), Postives = 43/72 (59.72%), Query Frame = 0 

Query: 3   WNLTG---ITFDLTLINYTFEVEAMRAEKHP----AVFTIGPRSKYMDSLLK-------N 60
           W L G     FD++ +NYTFEV+AM AEK P    AVFTIGPRS  M+SLLK       +
Sbjct: 30  WILPGQSCTVFDISPVNYTFEVQAMSAEKLPFLLPAVFTIGPRSDDMESLLKYAKLISPH 89

[Close]
BLAST of Cp4.1LG11g03340 vs. NCBI nr
Match: CAA7403842.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 55.8 bits (133), Expect = 4.32e-07
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 0 

Query: 3  WNLTG---ITFDLTLINYTFEVEAMRAEKHP----AVFTIGPRSKYMDSLLKNSK 50
          W L G     FD++ +NYTFEV+AM AEK P    AVFTIGPRS  M+SLLK +K
Sbjct: 30 WILPGQSCTVFDISPVNYTFEVQAMSAEKLPFLLPAVFTIGPRSDDMESLLKYAK 84

[Close]
BLAST of Cp4.1LG11g03340 vs. ExPASy TrEMBL
Match: A0A0A0LM23 (Flotillin-like OS=Cucumis sativus OX=3659 GN=Csa_2G382440 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.17e-08
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 3  WNLTGIT---FDLTLINYTFEVEAMRAEKHP----AVFTIGPRSKYMDSLLKNSK 50
          W L G +   FD++ +NYTFEV+AM AEK P    AVFTIGPRS  MDSLLK +K
Sbjct: 28 WVLPGQSCTIFDISPVNYTFEVQAMSAEKLPFILPAVFTIGPRSDDMDSLLKYAK 82

[Close]
BLAST of Cp4.1LG11g03340 vs. ExPASy TrEMBL
Match: A0A7I8JAA5 (Flotillin-like OS=Spirodela intermedia OX=51605 GN=SI7747_10013423 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.53e-07
Identity = 36/72 (50.00%), Postives = 43/72 (59.72%), Query Frame = 0 

Query: 3   WNLTG---ITFDLTLINYTFEVEAMRAEKHP----AVFTIGPRSKYMDSLLK-------N 60
           W L G     FD++ +NYTFEV+AM AEK P    AVFTIGPRS  M+SLLK       +
Sbjct: 30  WILPGQSCTVFDISPVNYTFEVQAMSAEKLPFLLPAVFTIGPRSDDMESLLKYAKLISPH 89

[Close]
BLAST of Cp4.1LG11g03340 vs. ExPASy TrEMBL
Match: A0A7I8L280 (Flotillin-like OS=Spirodela intermedia OX=51605 GN=SI8410_10014520 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.09e-07
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 0 

Query: 3  WNLTG---ITFDLTLINYTFEVEAMRAEKHP----AVFTIGPRSKYMDSLLKNSK 50
          W L G     FD++ +NYTFEV+AM AEK P    AVFTIGPRS  M+SLLK +K
Sbjct: 30 WILPGQSCTVFDISPVNYTFEVQAMSAEKLPFLLPAVFTIGPRSDDMESLLKYAK 84

[Close]
BLAST of Cp4.1LG11g03340 vs. ExPASy TrEMBL
Match: A0A4Y7IJ61 (Flotillin-like OS=Papaver somniferum OX=3469 GN=C5167_040444 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.66e-07
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 3  WNLTGIT---FDLTLINYTFEVEAMRAEKHP----AVFTIGPRSKYMDSLLKNSKFSIED 59
          W L G T   FD++ +NYTFEV+AM +EK P    AVFTIGP+    DSLLK +K     
Sbjct: 30 WILPGQTYSRFDISPVNYTFEVQAMSSEKLPFLLPAVFTIGPKIDDHDSLLKYAKLLSSH 89

[Close]
BLAST of Cp4.1LG11g03340 vs. ExPASy TrEMBL
Match: A0A444DKT0 (Flotillin-like OS=Ensete ventricosum OX=4639 GN=GW17_00038404 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.91e-07
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 0 

Query: 10 FDLTLINYTFEVEAMRAEKHP----AVFTIGPRSKYMDSLLKNSK 50
          FD++ +NYTFEV+AM AEK P    AVFTIGPR+  MDSLLK +K
Sbjct: 40 FDMSPVNYTFEVQAMSAEKLPFILPAVFTIGPRADDMDSLLKYAK 84

[Close]
BLAST of Cp4.1LG11g03340 vs. TAIR 10
Match: AT5G25250.1 (SPFH/Band 7/PHB domain-containing membrane-associated protein family )

HSP 1 Score: 44.3 bits (103), Expect = 4.1e-05
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 10 FDLTLINYTFEVEAMRAEK----HPAVFTIGPRSKYMDSLL 47
          FD++ +NYTF+V+AM AEK     PAVFTIGPR    D+L+
Sbjct: 38 FDVSPVNYTFKVQAMSAEKLPFVLPAVFTIGPRVDDDDALI 78

[Close]
BLAST of Cp4.1LG11g03340 vs. TAIR 10
Match: AT5G25260.1 (SPFH/Band 7/PHB domain-containing membrane-associated protein family )

HSP 1 Score: 43.5 bits (101), Expect = 6.9e-05
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 10 FDLTLINYTFEVEAMRAEK----HPAVFTIGPRSKYMDSLL 47
          FD++ +NYTF+V+AM AEK     PAVFTIGPR    ++L+
Sbjct: 38 FDVSPVNYTFKVQAMSAEKLPFVLPAVFTIGPRVDDTEALI 78

[Close]
BLAST of Cp4.1LG11g03340 vs. TAIR 10
Match: AT5G64870.1 (SPFH/Band 7/PHB domain-containing membrane-associated protein family )

HSP 1 Score: 43.1 bits (100), Expect = 9.0e-05
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 0 

Query: 10 FDLTLINYTFEVEAMRAEK----HPAVFTIGPR 39
          FD++ +NYTFEV+AM +EK     PAVFTIGPR
Sbjct: 39 FDVSPVNYTFEVQAMSSEKLPFVIPAVFTIGPR 71

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g03340 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
D2XNR02.7e-0662.22Flotillin-like protein 3 OS=Medicago truncatula OX=3880 GN=FLOT3 PE=2 SV=1[more]
D2XNR12.7e-0656.36Flotillin-like protein 4 OS=Medicago truncatula OX=3880 GN=FLOT4 PE=2 SV=1[more]
D2XNQ83.6e-0662.22Flotillin-like protein 1 OS=Medicago truncatula OX=3880 GN=FLOT1 PE=2 SV=1[more]
Q9AV571.4e-0557.78Flotillin-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=FLOT1 PE=3 ... [more]
D2XNQ91.4e-0561.36Flotillin-like protein 2 OS=Medicago truncatula OX=3880 GN=FLOT2 PE=2 SV=1[more]
BLAST of Cp4.1LG11g03340 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF3328004.14.84e-0858.18flotillin-like protein 3 [Carex littledalei][more]
KGN62970.11.69e-0760.00hypothetical protein Csa_022496 [Cucumis sativus][more]
XP_011649835.21.71e-0760.00LOW QUALITY PROTEIN: flotillin-like protein 4 [Cucumis sativus][more]
CAA2627773.13.15e-0750.00unnamed protein product [Spirodela intermedia][more]
CAA7403842.14.32e-0758.18unnamed protein product [Spirodela intermedia][more]
BLAST of Cp4.1LG11g03340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LM238.17e-0860.00Flotillin-like OS=Cucumis sativus OX=3659 GN=Csa_2G382440 PE=3 SV=1[more]
A0A7I8JAA51.53e-0750.00Flotillin-like OS=Spirodela intermedia OX=51605 GN=SI7747_10013423 PE=3 SV=1[more]
A0A7I8L2802.09e-0758.18Flotillin-like OS=Spirodela intermedia OX=51605 GN=SI8410_10014520 PE=3 SV=1[more]
A0A4Y7IJ613.66e-0750.00Flotillin-like OS=Papaver somniferum OX=3469 GN=C5167_040444 PE=3 SV=1[more]
A0A444DKT03.91e-0764.44Flotillin-like OS=Ensete ventricosum OX=4639 GN=GW17_00038404 PE=3 SV=1[more]
BLAST of Cp4.1LG11g03340 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G25250.14.1e-0556.10SPFH/Band 7/PHB domain-containing membrane-associated protein family [more]
AT5G25260.16.9e-0553.66SPFH/Band 7/PHB domain-containing membrane-associated protein family [more]
AT5G64870.19.0e-0563.64SPFH/Band 7/PHB domain-containing membrane-associated protein family [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g03340.1Cp4.1LG11g03340.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0072659 protein localization to plasma membrane
cellular_component GO:0044853 plasma membrane raft