Cp4.1LG11g02670 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g02670
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Expansin
Location	Cp4.1LG11: 1454386 .. 1457360 (+)
RNA-Seq Expression	Cp4.1LG11g02670
Synteny	Cp4.1LG11g02670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATAACACCTCTCTCTGCTTTTCATTTCACCGGAATTAATGGCGAAACTTCCTTTGATCTTCGCTTTCTCTCTTGCTCTCTCCGATTTCTTCTTCTTTTCCGGCAATGCTTTTGCGCCGTCGGGATGGAACCCCGCCCACGCCACCTTCTACGGCGACAGCGACGCCTCAGGGACAATGGGTAAGTAAAAAAATTTCATTTTGGTTAGTGTCTCTGTTTTTTTGGTTTATGTGAATTTATATTGTTATTGGTGGTTGCAGGCGGAGCTTGTGGGTATGGGAACTTGTACCAGACGGGTTATGGGACGAGAACGGCGGCGCTGAGTACGGCGCTGTTTAACGACGGTGCATCGTGCGGTCAATGCTTCAAGATCATTTGTGATTACAAGACGGATCCACGGTGGTGCATTAAAGGGGCGTCGGTGACCGTGACGGCGACCAATTTCTGCCCGCCTAACTATGCTCTGCCCAACAACAATGGCGGTTGGTGTAATCCTCCGCTTAAGCACTTCGACATGGCTCAGCCTGCTTGGCAGAAGATTGGCATTTACAGAGGCGGAATCATCCCCGTCCTCTTCCAAAGGTATCTTTTGTAACGTTAAGTCCACCGCTGACCGACATTGTACTTTCATATTTTCCCTTAATATTTTTAAAACCGGTCTGCTAGTAGAGGTTTACATACCTTTTTAAAAGGGTGTTTCGTTCTCCTCACCACTAATATGGATCTCACAATCCAGCCCTTTGTGGCCCGTGTCTTCGTTGGCACTCGTCCCTTTCTCCAATCGATGTGGGACCCACCAAATTCACCGTACTTCAGGGCTAGTGTCCTTGTTGGCAGATCGCCTCATGTCCACCCCTTTGAGTCTGTTCTTAACTTGAGGAGAAAATTTAGGAACGAAAGAATCTCTCCCCTTAAATTGTTTTTTTACTCCCTTTATTTATTTTGACATATTTGGATAGTGGGTCATTTCTAACGTTCTTAAACTTAAAATTTTAACGAGTTTAGTTTCTTAATGGCAGAGTTCCATGCATGAAGAAAGGAGGCGTGAGGTTCACCGTGAATGGACGAGACTATTTTGAGCTAGTTTTGATAAGCAACGTGGGAGGGGCTGGATCCATCCAATCGGTATCCATTAAAGGATCCAAATCCGGCAATTGGACGCCAATGTCGAGGAATTGGGGCGCCAATTGGCAGTCCAATTCCTATCTGAATGGCCAATCTTTGTCGTTCAAGATCACCACTAGCGATGGCCAGACCCGAGTGTTCAATAATGTTGTGCCTTCAAGCTGGCGGTTCGGCCAGACATTTGGAAGCAAGGTCCAATTCAGCTGAGCACCACGCCGGCGATTGGAGAGGCAGAGGCGTGCCGAGTGGTTTTTTTCAATCTACGGCAGCAGCCCGCCACCTGAAGAGACGATCCATGGGCGTTTGAATTTGTGGCAGCAAAGTAATAAGAAGCCTAAGCAAATTACTTAATGGCTTCAACACTTAGTTTTTTTTTTTTTCCTTACATTTTTAAGGTCACTTTGTAATTTCAATGGCTTTGTTACTCTTCTATAAATTATATACTACTTGACTATGCATATATGTACCCAAAACTATCACTCCTTTCAATGCCTTGAGCTACTACTACTACGACCATTTGTCCCCTAATCTCGAATCCATCATCTCCCGAGAAGTCCACCTAGCTATTGTCAATGACAACAACGTTCTTCTTGTGTTGCTTCGAATACACTTTCGTGATTGTTTCATTAGAGCTAACCAAATCATCGCAAAATAAGCCAGATTTATTAGAGTCTATTTGGAATAACTTTTTCTTCTAGTTCTTTTTTAAAGGGTTGTGGCTCATCTACTGACAACATTACAGACCAAAAATGATATTTTGCATCGAGAAATAGGTTGAGAGTTTTAAATCAAAGGTTTTTTGTCCTAAACCCTTCCAAGAAATTGGCATTGAGTTCTTTTAGCGCCAATTTATCGCAGATTTCCAATGATGGGAAGCTGGTGACGGCGGTGCGAGGTTGTCGGAGTGGACAACGCGACGAGAAAGAAGGAAAGTTCAGAATCTGAAGAACCACGCGGCGGCTGAGACGTCTCTTCACTCCATTGTGATTCAGAAGCTATTGAGCACCAAAGCCCATGTCGGTCGTCAGGTTGCCGCCACTCACCATTTCAAGCTATAGACCTATGGCTTCCGCAATCGAATGACCATCATCGACTCCGATAAAACCCTAATTTGTATGCACAATGCTTTGAATTTCATTGGCTCATTGGTCCGACAAAAGGGTCGATTACAGCATGAATGAATATGACGTCTAATGATTCTATGTTTATTATGTTGTAGACATTGCAGACGCTATAAATCTTTTGGATAAGCTCGTTGATTTGAAGTTTAATGGGGTTTTGAGCAGAGCTATGGGTTTTCATGGACCCAAGAGTAAGTGTCAATGCAAATTCCTCTAACTAACAGACCAACAAAATATGAAGTAATTATGCACTTCAAGACAGAAATCATTCTTCCCTCGACCAACAAAGCCAGAATCCATATCTGACAGTGAATAATCATCCACCTAAAACCTGTGATTCCATACTAATTCAAACTGGAAAGTAATGTGTAATGAAACCTTTCATGAAGCAGCAATCACGGGTTCATGTTTATGTTAAAGAAAAGATGCTGAAGTCAGGTAAGTTGGATGAAAGATAAGATAACACGATTGTAGAATATAGTCTCAACACCCAACGAACATCACAGAGTTTAACATAACACACAGAACAAGCATCATACATTACCATGCGACAAGAGAAAAGTACCATCATATCAGAGTTTCACTCCTTTATTTCTTTTCTATTCAAAGGCCCACTGGTTCTCCCTACGAACCTCCTCCTCTTCCTCGGGCGTAAAGTCGTTCTTGATGTTAAATGTCTTGCGGATCTCCTCAGGAGTCTTCCCCTTGATCATGTCAGCCACTGTCTGA

mRNA sequence

CATAACACCTCTCTCTGCTTTTCATTTCACCGGAATTAATGGCGAAACTTCCTTTGATCTTCGCTTTCTCTCTTGCTCTCTCCGATTTCTTCTTCTTTTCCGGCAATGCTTTTGCGCCGTCGGGATGGAACCCCGCCCACGCCACCTTCTACGGCGACAGCGACGCCTCAGGGACAATGGGCGGAGCTTGTGGGTATGGGAACTTGTACCAGACGGGTTATGGGACGAGAACGGCGGCGCTGAGTACGGCGCTGTTTAACGACGGTGCATCGTGCGGTCAATGCTTCAAGATCATTTGTGATTACAAGACGGATCCACGGTGGTGCATTAAAGGGGCGTCGGTGACCGTGACGGCGACCAATTTCTGCCCGCCTAACTATGCTCTGCCCAACAACAATGGCGACATTGCAGACGCTATAAATCTTTTGGATAAGCTCGTTGATTTGAAGTTTAATGGGGTTTTGAGCAGAGCTATGGGTTTTCATGGACCCAAGAGAGTCTTCCCCTTGATCATGTCAGCCACTGTCTGA

Coding sequence (CDS)

ATGGCGAAACTTCCTTTGATCTTCGCTTTCTCTCTTGCTCTCTCCGATTTCTTCTTCTTTTCCGGCAATGCTTTTGCGCCGTCGGGATGGAACCCCGCCCACGCCACCTTCTACGGCGACAGCGACGCCTCAGGGACAATGGGCGGAGCTTGTGGGTATGGGAACTTGTACCAGACGGGTTATGGGACGAGAACGGCGGCGCTGAGTACGGCGCTGTTTAACGACGGTGCATCGTGCGGTCAATGCTTCAAGATCATTTGTGATTACAAGACGGATCCACGGTGGTGCATTAAAGGGGCGTCGGTGACCGTGACGGCGACCAATTTCTGCCCGCCTAACTATGCTCTGCCCAACAACAATGGCGACATTGCAGACGCTATAAATCTTTTGGATAAGCTCGTTGATTTGAAGTTTAATGGGGTTTTGAGCAGAGCTATGGGTTTTCATGGACCCAAGAGAGTCTTCCCCTTGATCATGTCAGCCACTGTCTGA

Protein sequence

MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNGDIADAINLLDKLVDLKFNGVLSRAMGFHGPKRVFPLIMSATV

Homology

[Close]

BLAST of Cp4.1LG11g02670 vs. ExPASy Swiss-Prot
Match: Q9LNU3 (Expansin-A11 OS=Arabidopsis thaliana OX=3702 GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.4e-42
Identity = 79/110 (71.82%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 12  LALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTA 71
           LA+    F + +AF PSG    HATFYG SDASGTMGGACGYG+LY  GYGT TAALSTA
Sbjct: 8   LAVLAALFIAVDAFRPSGLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTA 67

Query: 72  LFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNG 122
           LFNDGASCG+C++I CD+  D RWC+KGASV +TATNFCPPN+ALPNNNG
Sbjct: 68  LFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNG 117

[Close]

BLAST of Cp4.1LG11g02670 vs. ExPASy Swiss-Prot
Match: Q4PR39 (Expansin-A29 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 168.3 bits (425), Expect = 7.1e-41
Identity = 77/98 (78.57%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 24  AFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCF 83
           AFA SGW+   ATFYG SDASGTMGGACGYGNLY  GYGTRTAALSTALF+DGASCGQC+
Sbjct: 28  AFAASGWSKGTATFYGGSDASGTMGGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCY 87

Query: 84  KIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNG 122
            + CD + DPRWC  GASVTVTATNFCPPNYALP+++G
Sbjct: 88  ALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDG 125

[Close]

BLAST of Cp4.1LG11g02670 vs. ExPASy Swiss-Prot
Match: Q7XWU8 (Expansin-A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 166.8 bits (421), Expect = 2.1e-40
Identity = 75/98 (76.53%), Postives = 84/98 (85.71%), Query Frame = 0


Query: 24  AFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCF 83
           +F  SGWN A ATFYG SDASGTMGGACGYG+LY TGYGT TAALST LFNDGASCGQC+
Sbjct: 28  SFTASGWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCY 87

Query: 84  KIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNG 122
           +I+CDY+ D R+CI G SVT+TATN CPPNYALPN+ G
Sbjct: 88  RIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAG 125

[Close]

BLAST of Cp4.1LG11g02670 vs. ExPASy Swiss-Prot
Match: Q4PR52 (Expansin-A13 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 2.3e-39
Identity = 73/98 (74.49%), Postives = 83/98 (84.69%), Query Frame = 0


Query: 24  AFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCF 83
           A  PSGW  AHATFYG +DASGTMGGACGYGNLY  GYGTRTAALSTALFNDG +CGQC+
Sbjct: 28  ALEPSGWVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCY 87

Query: 84  KIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNG 122
           K++CD KTD  WC  G SVT+TATNFCPPN+ LP+++G
Sbjct: 88  KLVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSG 125

[Close]

BLAST of Cp4.1LG11g02670 vs. ExPASy Swiss-Prot
Match: Q4PR43 (Expansin-A23 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 161.8 bits (408), Expect = 6.7e-39
Identity = 72/96 (75.00%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 26  APSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCFKI 85
           AP+ W  AHATFYG +DASGTMGGACGYGNLY  GYGTR AALSTALFNDGASCGQC+KI
Sbjct: 35  APTQWQKAHATFYGGADASGTMGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKI 94

Query: 86  ICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNG 122
            CD K  P+WC  G +VT+TATNFCPPN+ LP++NG
Sbjct: 95  ACDRKRAPQWCKPGVTVTITATNFCPPNWNLPSDNG 130

[Close]

BLAST of Cp4.1LG11g02670 vs. NCBI nr
Match: KAG7029452.1 (Expansin-A11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 257 bits (656), Expect = 1.57e-84
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG
Sbjct: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120

[Close]

BLAST of Cp4.1LG11g02670 vs. NCBI nr
Match: XP_022961884.1 (expansin-A11-like [Cucurbita moschata] >XP_023546763.1 expansin-A11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257 bits (656), Expect = 9.72e-84
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG
Sbjct: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120

[Close]

BLAST of Cp4.1LG11g02670 vs. NCBI nr
Match: KAG6598515.1 (Expansin-A11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 257 bits (656), Expect = 4.55e-83
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG
Sbjct: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120

[Close]

BLAST of Cp4.1LG11g02670 vs. NCBI nr
Match: XP_022997603.1 (expansin-A11-like [Cucurbita maxima])

HSP 1 Score: 253 bits (645), Expect = 4.56e-82
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           MAKLPLIFAFSLALS+FF FSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG
Sbjct: 1   MAKLPLIFAFSLALSNFFIFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120

[Close]

BLAST of Cp4.1LG11g02670 vs. NCBI nr
Match: NP_001267591.1 (expansin-A11-like precursor [Cucumis sativus] >AAB37749.1 expansin S2 precursor [Cucumis sativus] >KGN62259.1 hypothetical protein Csa_018565 [Cucumis sativus])

HSP 1 Score: 229 bits (585), Expect = 5.89e-73
Identity = 108/121 (89.26%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           M KLP  FAF LALS+FFF   NAF  SGW PAHATFYG+SDASGTMGGACGYGNLYQTG
Sbjct: 1   MEKLPFAFAFFLALSNFFFLFVNAFTASGWAPAHATFYGESDASGTMGGACGYGNLYQTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVT+TATNFCPPNYALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTITATNFCPPNYALPNNN 120

[Close]

BLAST of Cp4.1LG11g02670 vs. ExPASy TrEMBL
Match: A0A6J1HFB2 (Expansin OS=Cucurbita moschata OX=3662 GN=LOC111462523 PE=3 SV=1)

HSP 1 Score: 257 bits (656), Expect = 4.71e-84
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG
Sbjct: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120

[Close]

BLAST of Cp4.1LG11g02670 vs. ExPASy TrEMBL
Match: A0A6J1KEE6 (Expansin OS=Cucurbita maxima OX=3661 GN=LOC111492486 PE=3 SV=1)

HSP 1 Score: 253 bits (645), Expect = 2.21e-82
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           MAKLPLIFAFSLALS+FF FSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG
Sbjct: 1   MAKLPLIFAFSLALSNFFIFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120

[Close]

BLAST of Cp4.1LG11g02670 vs. ExPASy TrEMBL
Match: Q39626 (Expansin OS=Cucumis sativus OX=3659 GN=Cs-EXPA2 PE=2 SV=1)

HSP 1 Score: 229 bits (585), Expect = 2.85e-73
Identity = 108/121 (89.26%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           M KLP  FAF LALS+FFF   NAF  SGW PAHATFYG+SDASGTMGGACGYGNLYQTG
Sbjct: 1   MEKLPFAFAFFLALSNFFFLFVNAFTASGWAPAHATFYGESDASGTMGGACGYGNLYQTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVT+TATNFCPPNYALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTITATNFCPPNYALPNNN 120

[Close]

BLAST of Cp4.1LG11g02670 vs. ExPASy TrEMBL
Match: A0A1S3BCF4 (Expansin OS=Cucumis melo OX=3656 GN=LOC103488394 PE=2 SV=1)

HSP 1 Score: 225 bits (573), Expect = 1.95e-71
Identity = 108/122 (88.52%), Postives = 111/122 (90.98%), Query Frame = 0


Query: 1   MAKLPLIFAFS-LALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQT 60
           M KLP  FAF  LALS+FFF   NAF  SGW PAHATFYG+SDASGTMGGACGYGNLYQT
Sbjct: 1   MEKLPFAFAFFFLALSNFFFIFVNAFTASGWAPAHATFYGESDASGTMGGACGYGNLYQT 60

Query: 61  GYGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNN 120
           GYGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVT+TATNFCPPNYALPNN
Sbjct: 61  GYGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTITATNFCPPNYALPNN 120

[Close]

BLAST of Cp4.1LG11g02670 vs. ExPASy TrEMBL
Match: A0A5A7VGJ6 (Expansin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001530 PE=3 SV=1)

HSP 1 Score: 225 bits (573), Expect = 1.95e-71
Identity = 108/122 (88.52%), Postives = 111/122 (90.98%), Query Frame = 0


Query: 1   MAKLPLIFAFS-LALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQT 60
           M KLP  FAF  LALS+FFF   NAF  SGW PAHATFYG+SDASGTMGGACGYGNLYQT
Sbjct: 1   MEKLPFAFAFFFLALSNFFFIFVNAFTASGWAPAHATFYGESDASGTMGGACGYGNLYQT 60

Query: 61  GYGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNN 120
           GYGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVT+TATNFCPPNYALPNN
Sbjct: 61  GYGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTITATNFCPPNYALPNN 120

[Close]

BLAST of Cp4.1LG11g02670 vs. TAIR 10
Match: AT1G20190.1 (expansin 11 )

HSP 1 Score: 171.8 bits (434), Expect = 4.6e-43
Identity = 79/110 (71.82%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 12  LALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTA 71
           LA+    F + +AF PSG    HATFYG SDASGTMGGACGYG+LY  GYGT TAALSTA
Sbjct: 8   LAVLAALFIAVDAFRPSGLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTA 67

Query: 72  LFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNG 122
           LFNDGASCG+C++I CD+  D RWC+KGASV +TATNFCPPN+ALPNNNG
Sbjct: 68  LFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNG 117

[Close]

BLAST of Cp4.1LG11g02670 vs. TAIR 10
Match: AT4G01630.1 (expansin A17 )

HSP 1 Score: 152.1 bits (383), Expect = 3.8e-37
Identity = 73/115 (63.48%), Postives = 87/115 (75.65%), Query Frame = 0


Query: 10  FSLALSDFF---FFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTA 69
           FSL ++  F   FF   +   +GW  AHATFYG SDASGTMGGACGYGNLY  GY T TA
Sbjct: 5   FSLLVAMIFSTMFFMKISSVSAGWLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTA 64

Query: 70  ALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNG 122
           ALSTALFNDG SCG C++I+CD    P+WC+KG S+T+TATNFCPPN+A  ++NG
Sbjct: 65  ALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNG 119

[Close]

BLAST of Cp4.1LG11g02670 vs. TAIR 10
Match: AT1G69530.1 (expansin A1 )

HSP 1 Score: 145.2 bits (365), Expect = 4.6e-35
Identity = 70/99 (70.71%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 23  NAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQC 82
           N +A  GW  AHATFYG  DASGTMGGACGYGNLY  GYGT TAALSTALFN+G SCG C
Sbjct: 20  NGYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGAC 79

Query: 83  FKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNG 122
           F+I C  + D +WC+ G S+ VTATNFCPPN ALPNN G
Sbjct: 80  FEIRC--QNDGKWCLPG-SIVVTATNFCPPNNALPNNAG 115

[Close]

BLAST of Cp4.1LG11g02670 vs. TAIR 10
Match: AT1G69530.3 (expansin A1 )

HSP 1 Score: 145.2 bits (365), Expect = 4.6e-35
Identity = 70/99 (70.71%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 23  NAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQC 82
           N +A  GW  AHATFYG  DASGTMGGACGYGNLY  GYGT TAALSTALFN+G SCG C
Sbjct: 20  NGYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGAC 79

Query: 83  FKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNG 122
           F+I C  + D +WC+ G S+ VTATNFCPPN ALPNN G
Sbjct: 80  FEIRC--QNDGKWCLPG-SIVVTATNFCPPNNALPNNAG 115

[Close]

BLAST of Cp4.1LG11g02670 vs. TAIR 10
Match: AT1G69530.2 (expansin A1 )

HSP 1 Score: 145.2 bits (365), Expect = 4.6e-35
Identity = 70/99 (70.71%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 23  NAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQC 82
           N +A  GW  AHATFYG  DASGTMGGACGYGNLY  GYGT TAALSTALFN+G SCG C
Sbjct: 20  NGYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGAC 79

Query: 83  FKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNG 122
           F+I C  + D +WC+ G S+ VTATNFCPPN ALPNN G
Sbjct: 80  FEIRC--QNDGKWCLPG-SIVVTATNFCPPNNALPNNAG 115

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g02670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LNU3	6.4e-42	71.82	Expansin-A11 OS=Arabidopsis thaliana OX=3702 GN=EXPA11 PE=2 SV=1	[more]
Q4PR39	7.1e-41	78.57	Expansin-A29 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA29 PE=2 SV=2	[more]
Q7XWU8	2.1e-40	76.53	Expansin-A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA1 PE=2 SV=2	[more]
Q4PR52	2.3e-39	74.49	Expansin-A13 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA13 PE=2 SV=2	[more]
Q4PR43	6.7e-39	75.00	Expansin-A23 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA23.1 PE=2 SV=2	[more]

BLAST of Cp4.1LG11g02670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029452.1	1.57e-84	100.00	Expansin-A11 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022961884.1	9.72e-84	100.00	expansin-A11-like [Cucurbita moschata] >XP_023546763.1 expansin-A11-like [Cucurb...	[more]
KAG6598515.1	4.55e-83	100.00	Expansin-A11, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022997603.1	4.56e-82	98.35	expansin-A11-like [Cucurbita maxima]	[more]
NP_001267591.1	5.89e-73	89.26	expansin-A11-like precursor [Cucumis sativus] >AAB37749.1 expansin S2 precursor ...	[more]

BLAST of Cp4.1LG11g02670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HFB2	4.71e-84	100.00	Expansin OS=Cucurbita moschata OX=3662 GN=LOC111462523 PE=3 SV=1	[more]
A0A6J1KEE6	2.21e-82	98.35	Expansin OS=Cucurbita maxima OX=3661 GN=LOC111492486 PE=3 SV=1	[more]
Q39626	2.85e-73	89.26	Expansin OS=Cucumis sativus OX=3659 GN=Cs-EXPA2 PE=2 SV=1	[more]
A0A1S3BCF4	1.95e-71	88.52	Expansin OS=Cucumis melo OX=3656 GN=LOC103488394 PE=2 SV=1	[more]
A0A5A7VGJ6	1.95e-71	88.52	Expansin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001530 PE=3 ...	[more]

BLAST of Cp4.1LG11g02670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20190.1	4.6e-43	71.82	expansin 11	[more]
AT4G01630.1	3.8e-37	63.48	expansin A17	[more]
AT1G69530.1	4.6e-35	70.71	expansin A1	[more]
AT1G69530.3	4.6e-35	70.71	expansin A1	[more]
AT1G69530.2	4.6e-35	70.71	expansin A1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002963	Expansin	PRINTS	PR01226	EXPANSIN	coord: 89..100 score: 42.22 coord: 60..74 score: 87.56 coord: 102..112 score: 82.12
IPR007118	Expansin/Lol pI	PRINTS	PR01225	EXPANSNFAMLY	coord: 47..65 score: 71.05 coord: 29..44 score: 64.06 coord: 69..87 score: 63.68
IPR007112	Expansin/pollen allergen, DPBB domain	SMART	SM00837	dpbb_1	coord: 65..159 e-value: 2.8E-24 score: 96.7
IPR007112	Expansin/pollen allergen, DPBB domain	PROSITE	PS50842	EXPANSIN_EG45	coord: 48..163 score: 19.630644
IPR009009	RlpA-like protein, double-psi beta-barrel domain	PFAM	PF03330	DPBB_1	coord: 65..116 e-value: 3.5E-12 score: 46.5
IPR036908	RlpA-like domain superfamily	GENE3D	2.40.40.10		coord: 20..141 e-value: 7.6E-34 score: 118.7
IPR036908	RlpA-like domain superfamily	SUPERFAMILY	50685	Barwin-like endoglucanases	coord: 18..120
None	No IPR available	PANTHER	PTHR31867:SF154	EXPANSIN	coord: 10..123
None	No IPR available	PANTHER	PTHR31867	EXPANSIN-A15	coord: 10..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g02670.1	Cp4.1LG11g02670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009664	plant-type cell wall organization
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016020	membrane