Cp4.1LG11g02570 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g02570
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Sec-independent protein translocase protein TATC
Location	Cp4.1LG11: 1431203 .. 1431796 (+)
RNA-Seq Expression	Cp4.1LG11g02570
Synteny	Cp4.1LG11g02570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCAGTTTTGATTCCATTTTCTGCTGAGAGATCTCGCAGTTTAAAGTCCTGTAATTTCTCTCCAGCCACCGTCCACGACGGTCTTCTCAACGTCCCTCCGCCGGCCGTCCCAAATTATAGTCACCGCCACCACCAGCAACCGCCTCTTCTCCCTCTGCCCCGCCGTCCGTTTCCCCCTACGGCAGTCGGGGCCCCGCCGTCGTGCCGCCCAAAGGGTACGAAATCCAGAGATCAATCTCTTACCCCAAAGAAATCAAAACCAATTAAACGAAGTAGAGGGCCTCCGGCGTTGAAATCGACGGCGGAGTTTATGATCGTTGATTCCACGAATCGACTGGGGCCGGAGCCGAGCCACGTACCTAAAGATTTATGGAGAGTTTTAGGATTACGGTCGTCGGCGCCACCGAGAGAAGGTGGCCGGAGTTTTGAGACAGAATTTTCGGGGTCAGGGTTCGGCGTTTCGCCGCCACCGAGTAGCGTTCCGCTTCCGAAATTTAATCTCAGGCGGGAGGTGAGTTGTAATGTGGAGGCCGCCGGAGTGGATGCCGGAGCAACCGACAACCTCAGGCGATTATTGCGCCTCCGATGA

mRNA sequence

ATGGAGGCAGTTTTGATTCCATTTTCTGCTGAGAGATCTCGCAGTTTAAAGTCCTGTAATTTCTCTCCAGCCACCGTCCACGACGGTCTTCTCAACGTCCCTCCGCCGGCCGTCCCAAATTATAGTCACCGCCACCACCAGCAACCGCCTCTTCTCCCTCTGCCCCGCCGTCCGTTTCCCCCTACGGCAGTCGGGGCCCCGCCGTCGTGCCGCCCAAAGGGTACGAAATCCAGAGATCAATCTCTTACCCCAAAGAAATCAAAACCAATTAAACGAAGTAGAGGGCCTCCGGCGTTGAAATCGACGGCGGAGTTTATGATCGTTGATTCCACGAATCGACTGGGGCCGGAGCCGAGCCACGTACCTAAAGATTTATGGAGAGTTTTAGGATTACGGTCGTCGGCGCCACCGAGAGAAGGTGGCCGGAGTTTTGAGACAGAATTTTCGGGGTCAGGGTTCGGCGTTTCGCCGCCACCGAGTAGCGTTCCGCTTCCGAAATTTAATCTCAGGCGGGAGGTGAGTTGTAATGTGGAGGCCGCCGGAGTGGATGCCGGAGCAACCGACAACCTCAGGCGATTATTGCGCCTCCGATGA

Coding sequence (CDS)

ATGGAGGCAGTTTTGATTCCATTTTCTGCTGAGAGATCTCGCAGTTTAAAGTCCTGTAATTTCTCTCCAGCCACCGTCCACGACGGTCTTCTCAACGTCCCTCCGCCGGCCGTCCCAAATTATAGTCACCGCCACCACCAGCAACCGCCTCTTCTCCCTCTGCCCCGCCGTCCGTTTCCCCCTACGGCAGTCGGGGCCCCGCCGTCGTGCCGCCCAAAGGGTACGAAATCCAGAGATCAATCTCTTACCCCAAAGAAATCAAAACCAATTAAACGAAGTAGAGGGCCTCCGGCGTTGAAATCGACGGCGGAGTTTATGATCGTTGATTCCACGAATCGACTGGGGCCGGAGCCGAGCCACGTACCTAAAGATTTATGGAGAGTTTTAGGATTACGGTCGTCGGCGCCACCGAGAGAAGGTGGCCGGAGTTTTGAGACAGAATTTTCGGGGTCAGGGTTCGGCGTTTCGCCGCCACCGAGTAGCGTTCCGCTTCCGAAATTTAATCTCAGGCGGGAGGTGAGTTGTAATGTGGAGGCCGCCGGAGTGGATGCCGGAGCAACCGACAACCTCAGGCGATTATTGCGCCTCCGATGA

Protein sequence

MEAVLIPFSAERSRSLKSCNFSPATVHDGLLNVPPPAVPNYSHRHHQQPPLLPLPRRPFPPTAVGAPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSHVPKDLWRVLGLRSSAPPREGGRSFETEFSGSGFGVSPPPSSVPLPKFNLRREVSCNVEAAGVDAGATDNLRRLLRLR

Homology

[Close]

BLAST of Cp4.1LG11g02570 vs. NCBI nr
Match: XP_023546813.1 (proline-rich receptor-like protein kinase PERK2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 396 bits (1018), Expect = 3.44e-139
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MEAVLIPFSAERSRSLKSCNFSPATVHDGLLNVPPPAVPNYSHRHHQQPPLLPLPRRPFP 60
           MEAVLIPFSAERSRSLKSCNFSPATVHDGLLNVPPPAVPNYSHRHHQQPPLLPLPRRPFP
Sbjct: 1   MEAVLIPFSAERSRSLKSCNFSPATVHDGLLNVPPPAVPNYSHRHHQQPPLLPLPRRPFP 60

Query: 61  PTAVGAPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH 120
           PTAVGAPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH
Sbjct: 61  PTAVGAPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH 120

Query: 121 VPKDLWRVLGLRSSAPPREGGRSFETEFSGSGFGVSPPPSSVPLPKFNLRREVSCNVEAA 180
           VPKDLWRVLGLRSSAPPREGGRSFETEFSGSGFGVSPPPSSVPLPKFNLRREVSCNVEAA
Sbjct: 121 VPKDLWRVLGLRSSAPPREGGRSFETEFSGSGFGVSPPPSSVPLPKFNLRREVSCNVEAA 180

Query: 181 GVDAGATDNLRRLLRLR 197
           GVDAGATDNLRRLLRLR
Sbjct: 181 GVDAGATDNLRRLLRLR 197

[Close]

BLAST of Cp4.1LG11g02570 vs. NCBI nr
Match: XP_022997633.1 (uncharacterized protein LOC111492508 [Cucurbita maxima])

HSP 1 Score: 381 bits (979), Expect = 3.05e-133
Identity = 190/197 (96.45%), Postives = 192/197 (97.46%), Query Frame = 0


Query: 1   MEAVLIPFSAERSRSLKSCNFSPATVHDGLLNVPPPAVPNYSHRHHQQPPLLPLPRRPFP 60
           MEAVLIPFSAERSRSLKS NFSPATVHDG+LN+PPPAVPNYSHRHHQQPPLLPLP RPFP
Sbjct: 1   MEAVLIPFSAERSRSLKSRNFSPATVHDGVLNIPPPAVPNYSHRHHQQPPLLPLPGRPFP 60

Query: 61  PTAVGAPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH 120
           PTAVG PPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH
Sbjct: 61  PTAVGVPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH 120

Query: 121 VPKDLWRVLGLRSSAPPREGGRSFETEFSGSGFGVSPPPSSVPLPKFNLRREVSCNVEAA 180
           VPKDLWRVLGLRSSAPPREGGRSFETEFSGS FGVSPPPSSVPLPKF LRREVSCNVEAA
Sbjct: 121 VPKDLWRVLGLRSSAPPREGGRSFETEFSGSAFGVSPPPSSVPLPKFTLRREVSCNVEAA 180

Query: 181 GVDAGATDNLRRLLRLR 197
           GVDAGATDNLRRLLRLR
Sbjct: 181 GVDAGATDNLRRLLRLR 197

[Close]

BLAST of Cp4.1LG11g02570 vs. NCBI nr
Match: XP_022962625.1 (uncharacterized protein LOC111463019 [Cucurbita moschata])

HSP 1 Score: 373 bits (957), Expect = 6.89e-130
Identity = 188/197 (95.43%), Postives = 189/197 (95.94%), Query Frame = 0


Query: 1   MEAVLIPFSAERSRSLKSCNFSPATVHDGLLNVPPPAVPNYSHRHHQQPPLLPLPRRPFP 60
           ME VLIPFSAERSRSLKS NF PATVHDGLLNVPPPAVPNYSHR  QQPPLLPLPRRPFP
Sbjct: 1   MEGVLIPFSAERSRSLKSRNFFPATVHDGLLNVPPPAVPNYSHRLRQQPPLLPLPRRPFP 60

Query: 61  PTAVGAPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH 120
           PTAVGAPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH
Sbjct: 61  PTAVGAPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH 120

Query: 121 VPKDLWRVLGLRSSAPPREGGRSFETEFSGSGFGVSPPPSSVPLPKFNLRREVSCNVEAA 180
           VPKDLWRVLGLRSSAPPREGGR FETEFSGS FGVSPPPSSVPLPKF LRRE+SCNVEAA
Sbjct: 121 VPKDLWRVLGLRSSAPPREGGRRFETEFSGSAFGVSPPPSSVPLPKFTLRREMSCNVEAA 180

Query: 181 GVDAGATDNLRRLLRLR 197
           GVDAGATDNLRRLLRLR
Sbjct: 181 GVDAGATDNLRRLLRLR 197

[Close]

BLAST of Cp4.1LG11g02570 vs. NCBI nr
Match: KAG6598509.1 (hypothetical protein SDJN03_08287, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 370 bits (950), Expect = 8.04e-129
Identity = 187/197 (94.92%), Postives = 187/197 (94.92%), Query Frame = 0


Query: 1   MEAVLIPFSAERSRSLKSCNFSPATVHDGLLNVPPPAVPNYSHRHHQQPPLLPLPRRPFP 60
           ME VLIPFSAERSRSLKS NF PATVHDGLLNVPPPAVPNYSHR  QQPPLLPLPRRPFP
Sbjct: 1   MEGVLIPFSAERSRSLKSRNFFPATVHDGLLNVPPPAVPNYSHRIRQQPPLLPLPRRPFP 60

Query: 61  PTAVGAPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH 120
           PTAVG PPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH
Sbjct: 61  PTAVGPPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH 120

Query: 121 VPKDLWRVLGLRSSAPPREGGRSFETEFSGSGFGVSPPPSSVPLPKFNLRREVSCNVEAA 180
           VPKDLWRVLGLRSSAPPREGGR FETEFSGS FGVSPPPS VPLPKF LRREVSCNVEAA
Sbjct: 121 VPKDLWRVLGLRSSAPPREGGRRFETEFSGSAFGVSPPPSCVPLPKFTLRREVSCNVEAA 180

Query: 181 GVDAGATDNLRRLLRLR 197
           GVDAGATDNLRRLLRLR
Sbjct: 181 GVDAGATDNLRRLLRLR 197

[Close]

BLAST of Cp4.1LG11g02570 vs. NCBI nr
Match: KAG7029446.1 (hypothetical protein SDJN02_07785, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 366 bits (940), Expect = 2.69e-127
Identity = 186/197 (94.42%), Postives = 186/197 (94.42%), Query Frame = 0


Query: 1   MEAVLIPFSAERSRSLKSCNFSPATVHDGLLNVPPPAVPNYSHRHHQQPPLLPLPRRPFP 60
           ME VLIPFSAERSRSLKS NF PATVHDGLLNVPPPAVPNYSHR  QQPPLLPLPRRPFP
Sbjct: 1   MEGVLIPFSAERSRSLKSRNFFPATVHDGLLNVPPPAVPNYSHRIRQQPPLLPLPRRPFP 60

Query: 61  PTAVGAPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH 120
           PTAVG  PSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH
Sbjct: 61  PTAVGPLPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH 120

Query: 121 VPKDLWRVLGLRSSAPPREGGRSFETEFSGSGFGVSPPPSSVPLPKFNLRREVSCNVEAA 180
           VPKDLWRVLGLRSSAPPREGGR FETEFSGS FGVSPPPS VPLPKF LRREVSCNVEAA
Sbjct: 121 VPKDLWRVLGLRSSAPPREGGRRFETEFSGSAFGVSPPPSCVPLPKFTLRREVSCNVEAA 180

Query: 181 GVDAGATDNLRRLLRLR 197
           GVDAGATDNLRRLLRLR
Sbjct: 181 GVDAGATDNLRRLLRLR 197

[Close]

BLAST of Cp4.1LG11g02570 vs. ExPASy TrEMBL
Match: A0A6J1KEH8 (uncharacterized protein LOC111492508 OS=Cucurbita maxima OX=3661 GN=LOC111492508 PE=4 SV=1)

HSP 1 Score: 381 bits (979), Expect = 1.47e-133
Identity = 190/197 (96.45%), Postives = 192/197 (97.46%), Query Frame = 0


Query: 1   MEAVLIPFSAERSRSLKSCNFSPATVHDGLLNVPPPAVPNYSHRHHQQPPLLPLPRRPFP 60
           MEAVLIPFSAERSRSLKS NFSPATVHDG+LN+PPPAVPNYSHRHHQQPPLLPLP RPFP
Sbjct: 1   MEAVLIPFSAERSRSLKSRNFSPATVHDGVLNIPPPAVPNYSHRHHQQPPLLPLPGRPFP 60

Query: 61  PTAVGAPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH 120
           PTAVG PPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH
Sbjct: 61  PTAVGVPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH 120

Query: 121 VPKDLWRVLGLRSSAPPREGGRSFETEFSGSGFGVSPPPSSVPLPKFNLRREVSCNVEAA 180
           VPKDLWRVLGLRSSAPPREGGRSFETEFSGS FGVSPPPSSVPLPKF LRREVSCNVEAA
Sbjct: 121 VPKDLWRVLGLRSSAPPREGGRSFETEFSGSAFGVSPPPSSVPLPKFTLRREVSCNVEAA 180

Query: 181 GVDAGATDNLRRLLRLR 197
           GVDAGATDNLRRLLRLR
Sbjct: 181 GVDAGATDNLRRLLRLR 197

[Close]

BLAST of Cp4.1LG11g02570 vs. ExPASy TrEMBL
Match: A0A6J1HFM4 (uncharacterized protein LOC111463019 OS=Cucurbita moschata OX=3662 GN=LOC111463019 PE=4 SV=1)

HSP 1 Score: 373 bits (957), Expect = 3.33e-130
Identity = 188/197 (95.43%), Postives = 189/197 (95.94%), Query Frame = 0


Query: 1   MEAVLIPFSAERSRSLKSCNFSPATVHDGLLNVPPPAVPNYSHRHHQQPPLLPLPRRPFP 60
           ME VLIPFSAERSRSLKS NF PATVHDGLLNVPPPAVPNYSHR  QQPPLLPLPRRPFP
Sbjct: 1   MEGVLIPFSAERSRSLKSRNFFPATVHDGLLNVPPPAVPNYSHRLRQQPPLLPLPRRPFP 60

Query: 61  PTAVGAPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH 120
           PTAVGAPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH
Sbjct: 61  PTAVGAPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH 120

Query: 121 VPKDLWRVLGLRSSAPPREGGRSFETEFSGSGFGVSPPPSSVPLPKFNLRREVSCNVEAA 180
           VPKDLWRVLGLRSSAPPREGGR FETEFSGS FGVSPPPSSVPLPKF LRRE+SCNVEAA
Sbjct: 121 VPKDLWRVLGLRSSAPPREGGRRFETEFSGSAFGVSPPPSSVPLPKFTLRREMSCNVEAA 180

Query: 181 GVDAGATDNLRRLLRLR 197
           GVDAGATDNLRRLLRLR
Sbjct: 181 GVDAGATDNLRRLLRLR 197

[Close]

BLAST of Cp4.1LG11g02570 vs. ExPASy TrEMBL
Match: A0A5A7VG22 (Sec-independent protein translocase protein TATC OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001470 PE=4 SV=1)

HSP 1 Score: 268 bits (684), Expect = 1.54e-88
Identity = 145/202 (71.78%), Postives = 155/202 (76.73%), Query Frame = 0


Query: 1   MEAVLIPFSAERSRSLKSCNFSPATVHDGLLNVPPPAVPNYSHRHHQQPPLLPLPRRPFP 60
           ME VLIPFSA++SRS    N SPATVH GLLN P   +P    RHHQQPPLLPLPRRP P
Sbjct: 1   MEVVLIPFSADQSRSFNPQNLSPATVHAGLLNFPLRGIPYNGRRHHQQPPLLPLPRRPLP 60

Query: 61  PTAVGAPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH 120
           P+  GA    R K  K RDQSL PKKSKPIKRSRGPPA KST E +I+DSTNRLGPEP H
Sbjct: 61  PSETGATSFFRQKCVKFRDQSLNPKKSKPIKRSRGPPAAKSTVELVIIDSTNRLGPEPCH 120

Query: 121 VPKDLWRVLGLRSSAPPREGGRSFET----EFSGSGFGVSPPPSSVPLPKFNLRREV-SC 180
           VPKDLWRVLGLR SAP  +  RS+ET    EFSGS    SPPPSSVPLPKF+LRR+V  C
Sbjct: 121 VPKDLWRVLGLRPSAPMCKSTRSWETAAEIEFSGSACSQSPPPSSVPLPKFSLRRKVVGC 180

Query: 181 NVEAAGVDAGATDNLRRLLRLR 197
           NVE AGVDAGATDNLRRLLRLR
Sbjct: 181 NVEGAGVDAGATDNLRRLLRLR 202

[Close]

BLAST of Cp4.1LG11g02570 vs. ExPASy TrEMBL
Match: A0A0A0LN70 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G345930 PE=4 SV=1)

HSP 1 Score: 263 bits (672), Expect = 1.03e-86
Identity = 142/202 (70.30%), Postives = 156/202 (77.23%), Query Frame = 0


Query: 1   MEAVLIPFSAERSRSLKSCNFSPATVHDGLLNVPPPAVPNYSHRHHQQPPLLPLPRRPFP 60
           ME V IPFSA++SR     NFSPA VH G LN P P +   S R HQQPPLLPLPRRP P
Sbjct: 1   MEVVFIPFSADQSRGFNPQNFSPANVHGGFLNFPLPGISYNSCRQHQQPPLLPLPRRPLP 60

Query: 61  PTAVGAPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH 120
           P+ +GA  S RPK  + RDQSLTPKKSKPIKRSRGPPA KST E +IVDSTNRLGPEPSH
Sbjct: 61  PSEIGATVSSRPKCMEFRDQSLTPKKSKPIKRSRGPPAAKSTVELVIVDSTNRLGPEPSH 120

Query: 121 VPKDLWRVLGLRSSAPPREGGRSFET----EFSGSGFGVSPPPSSVPLPKFNLRREV-SC 180
           VPKDL  +LGLR S P  E  RS+ET    EFSGS +  SPPPSSVPLPKF+LRR+V  C
Sbjct: 121 VPKDLLTLLGLRPSVPLCESTRSWETAAEIEFSGSAYSQSPPPSSVPLPKFSLRRKVVGC 180

Query: 181 NVEAAGVDAGATDNLRRLLRLR 197
           NVEA+GVDAGATDNLRRLLR+R
Sbjct: 181 NVEASGVDAGATDNLRRLLRIR 202

[Close]

BLAST of Cp4.1LG11g02570 vs. ExPASy TrEMBL
Match: A0A6J1GI76 (uncharacterized protein LOC111454434 OS=Cucurbita moschata OX=3662 GN=LOC111454434 PE=4 SV=1)

HSP 1 Score: 216 bits (550), Expect = 2.07e-68
Identity = 132/207 (63.77%), Postives = 144/207 (69.57%), Query Frame = 0


Query: 1   MEAVLIPFSAERSRSLKSCNFSPATVHDGLLNVPPPAVPNYSHR--HHQQPPLLPLPRRP 60
           MEAVLIP            NFSPA           PAV  YSHR  H +QPP  PLPRR 
Sbjct: 1   MEAVLIPH-----------NFSPAA----------PAVTFYSHRRRHRRQPPRFPLPRRS 60

Query: 61  FPPTAVGAPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEP 120
           FPP+A  A PSCRPKG + RDQSL PKKSK IKR R  P ++ TAE +IVDSTNR+GPEP
Sbjct: 61  FPPSAAEAQPSCRPKGVRFRDQSLAPKKSKSIKRCRELP-VEMTAEALIVDSTNRMGPEP 120

Query: 121 SHVPKDLWRVLGLR---SSAPPREGGRSF----ETEFSGSGFGVSPPPSSVPLPKFNLRR 180
           SHVPKDL  VLGLR    S+PPREG RS     E EFSGS F VSPPPSSVPLP F L R
Sbjct: 121 SHVPKDLCVVLGLRLPPPSSPPREGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMR 180

Query: 181 EVSCNVEAA-GVDAGATDNLRRLLRLR 197
           +++CNVEAA G+DAGATDNLRRLLRLR
Sbjct: 181 KLNCNVEAAAGIDAGATDNLRRLLRLR 185

[Close]

BLAST of Cp4.1LG11g02570 vs. TAIR 10
Match: AT1G20070.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; Has 26 Blast hits to 26 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 5.8e-08
Identity = 49/160 (30.63%), Postives = 75/160 (46.88%), Query Frame = 0


Query: 39  PNYSHRH-HQQPPLLPLPRRPFPPTAVGAPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPP 98
           P Y   H + QPPLLPLPR       +    S RP+   +   +    ++K I  +    
Sbjct: 53  PAYPPPHSYSQPPLLPLPRVNSSTVPLQRVNSSRPRVNNNSSLNRV-AQTKAISETH--- 112

Query: 99  ALKSTAEFMIVDSTNRLGPEPSHVPKDLWRVLGLRSSAPPREGGRSFETEFSGSGFGVSP 158
                AEF+      R G  P    +              R+    F+     +   +SP
Sbjct: 113 --MKKAEFIESARLTRTGSVPIQANQ-------------LRDFPEGFDGYPGPAIMLLSP 172

Query: 159 PPSSVPLPKFNLRREVSCNVEAAGVDAGATDNLRRLLRLR 198
           PPSS+P+P+F+++ ++ CNVEAAG    AT+N+RR+L+LR
Sbjct: 173 PPSSLPMPRFSIKPKLRCNVEAAGKSDVATNNIRRVLQLR 193

[Close]

BLAST of Cp4.1LG11g02570 vs. TAIR 10
Match: AT4G02040.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30 Blast hits to 30 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 1.0e-04
Identity = 28/72 (38.89%), Postives = 39/72 (54.17%), Query Frame = 0


Query: 97  PALKSTAEF-MIVDSTNRLGPEPSHVPKDLWRVLGLRSSAPPREGGRSFETEFSGSGFGV 156
           P LK   +  +IV +TNR+GPEP  + K +   LGL+S              F+G+   +
Sbjct: 87  PVLKMIKDVDLIVSATNRIGPEPEILMKQI-GALGLQS--------------FAGANCSL 143

Query: 157 SPPPSSVPLPKF 168
           SPPPS VP+P F
Sbjct: 147 SPPPSCVPIPCF 143

[Close]

BLAST of Cp4.1LG11g02570 vs. TAIR 10
Match: AT3G21570.1 (unknown protein; Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 1.3e-04
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 148 FSGSG-FGVSPPPSSVPLPKFNLRREVSCNVEAAGVDAGATDNLRRLLRLR 198
           ++GS  F VSP PSS+PLP F+ +++    V    +D  A+ +LRRLLRL+
Sbjct: 86  YAGSSIFAVSPAPSSLPLPSFS-KKKAKSQVVVVSIDDSASQDLRRLLRLK 135

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g02570 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g02570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546813.1	3.44e-139	100.00	proline-rich receptor-like protein kinase PERK2 [Cucurbita pepo subsp. pepo]	[more]
XP_022997633.1	3.05e-133	96.45	uncharacterized protein LOC111492508 [Cucurbita maxima]	[more]
XP_022962625.1	6.89e-130	95.43	uncharacterized protein LOC111463019 [Cucurbita moschata]	[more]
KAG6598509.1	8.04e-129	94.92	hypothetical protein SDJN03_08287, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7029446.1	2.69e-127	94.42	hypothetical protein SDJN02_07785, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cp4.1LG11g02570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KEH8	1.47e-133	96.45	uncharacterized protein LOC111492508 OS=Cucurbita maxima OX=3661 GN=LOC111492508...	[more]
A0A6J1HFM4	3.33e-130	95.43	uncharacterized protein LOC111463019 OS=Cucurbita moschata OX=3662 GN=LOC1114630...	[more]
A0A5A7VG22	1.54e-88	71.78	Sec-independent protein translocase protein TATC OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0LN70	1.03e-86	70.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G345930 PE=4 SV=1	[more]
A0A6J1GI76	2.07e-68	63.77	uncharacterized protein LOC111454434 OS=Cucurbita moschata OX=3662 GN=LOC1114544...	[more]

BLAST of Cp4.1LG11g02570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20070.1	5.8e-08	30.63	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G02040.1	1.0e-04	38.89	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G21570.1	1.3e-04	45.10	unknown protein; Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..160
None	No IPR available	PANTHER	PTHR33670	SPLICING FACTOR, PROLINE- AND GLUTAMINE-RICH-LIKE	coord: 30..197
None	No IPR available	PANTHER	PTHR33670:SF14	SPLICING FACTOR, PROLINE- AND GLUTAMINE-RICH-LIKE	coord: 30..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g02570.1	Cp4.1LG11g02570.1	mRNA