Cp4.1LG11g02540 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g02540
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Transmembrane protein
Location	Cp4.1LG11: 1384890 .. 1387584 (-)
RNA-Seq Expression	Cp4.1LG11g02540
Synteny	Cp4.1LG11g02540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTGGTTGATAAGAGAGAGAAGAGGGCCAGCATGGAAACAAGGATGGGCGGAGCAGGCCATAGCCTCCATAACTCCACCACCAAGGCCTCTGCTTGCCATACTTGGAATCTTGGTCATTCTGCTATCTGTGTCATCATTTTCAAGCCACAGGTCACAGGTGAAGACAACAAGGATCAACTTTAAGCTCTTCTTCTTGCTCTTACCTCTAGTATTTGTCTTTGTTGGAAACTCCATTGTTAGATATGGTCGTCTTGTAATCATCACTCCGAGAACAAAGCTCGAGCCGGTTTACGTCACCGACGACACTGCGTCGCCTTTGGGCGTGGCGGTTTTGCTGGTTGTGTTGTTGGTCTTGATATCTTATCAGCCATACTTTCACTCTAAATGGTTTCCAGCAATATGGAGACCATATTATTATTAGACCATCATGCTTTGGCTTTGAATTATGAACAATGTAAGGCTCCGATATGTTCCTCCAAGCCAAAAATGAAAAAAAAAAAAAACATGTAATTTCAGAGAAGAAATAACAGATCCATAAAAGAAAAGGAGTTTATGTTAGGCAGAGGTTAGAAGTTATTGACAATCCTTGTTTTATAGGCAGAGATAAACAATGAAACATGGAAATACAGACAGATAATCAGAGATATCTGCAAGGAAACAACTTACACTTGCATGGTTAATTTCACAAATGAGAGTACCAACTTACACACACATAGTGCTCCTCAATTTGGGAGGTTTGAATGACGATGTAAACAATCTGGGGGTCTCTGATTCACGTATAAGGCCTCTTCTTCGTTTAAAACTCCCGTCTTCCTGATAACCAAGAAAAAGAAGAAAACATGTTATGACTTATAAGCTTATTTCATGTCATAGATACATAGAAGGAAGAAAAAACAGCCCAAAATGATCGTCCATTCTTGAAATTCTTCCATTGGTACGAAGCATTTTGGAGAAGTCAAAAGCAAAACCATGAGAGTTTATGTTCAAAGTGGACAATATCATACCATTGTGGAGGGTCGGGTTCCTAACATGGTATCAGTGCTATGCCTTTAACTTAGTCATTTCAATAGAATTCTCAAGTGTCGAACAAAAAAGTTGTGAGCCTCAAAGGTGTAGTAAAAGGTGACTCATGTGTCGAACAAATGGTGTACTTTGTTTGAGAGCTCTAGAGAAGGAGTCGAGCCTCGATTAGGGGGAGATTGTTTGAGAGTTCCATAGGCCTCAAGGGAAGCTCTATGGTGTACATTGTTCAAGAGAAGAATTGTCAGGAGAGGAGTCTCACATTGACTAACTAATAGGAAGATTATGAGTTTATAAGTAAGAAATACTATCTCCTTTAATAGTAAAACTAGTAGGAGATATATTATATCATAGGGTAATATCTAGACATAGGACATTACACCTACACGTGGGAAGAGCATCCCAAGAACTTAAAGGAAAACTAGCCACCAACACAAGAACTTATAATGATATTCCTAAGATGCCGTACAAGAACCTAAGAGGTTTATATGCTCAGAAGAGAGGTCTATAGGATCAGAAGATCCAGGGACGGGATATCACTATGAGAGGAGACATGACTAGATCAACCACAAGACATTACAGGAGCTAGTCTAGGTGAACATAGAGGCCTTTTGGGGAAACCAAAAGCAACTCGATGAGAGCTTATTTTCAAAGGGGACAATATCATACTATTGTAGAAGGTCGGAGTTTCTAACAAAAATCAACATGGTATCTGATACTAGCTGTGAAACAGAGGCAGGAGGTAAAAAAGGCATATTTTAGGCTAAAATCTCTCAGTTCTTCCATTTTCTATCAATTTTGTTCTAACATCCCTGTGTACTCGTTGTGAAATTTAGTTTAATTATGTTCTAGATTTCATTTTTAGGACTACGATTGTACTTCAGACATTCTGAGCTGTATGAGCATTTAATTCCTAGAAAATGACACTGGAAATGTGTCGCTATAATTGATGAATTAATAAACATGCACATAGAACTTCAAACTTAGTTAGATAAAGAGAATATATGCCATGAATAACAGGTAAAGCAACAAGACGAGCAAATGGAATATCAATTCTTGCACGATAACTACCTTACTAGAATCTCCATTGCCACGAGATGCTTGCACAGGAGAAGCTTTTTTCCTCACATTGATGTTACTGCCACTACCCTTCCCTTCTTTCTTCACTCCTAAGCTGCAGGTTCTATAGCCAGATCCAGATGTGCATCGGTTCAACACAGGCGTAACTGATACGCCATTATGCTTTCTTAAGACTTCCAATTCACGTGAAATTCTAGAAATTTCATCATTTAATTTTCTGGAATCGACCTCCGTCTTTTCCAACTGACTTTCCAAGGCTGCGATTGTGCAATCTTTTTCAATATTCAAAGATTGAAGCTGTTCCATATTAGCAAGAAGATTTTCGATCTTCGTACGCGCTAGTTCAACTTCTGTGAGATTATGCCTTAATTTACTTTCGTAGTCATTCTCCATAATGCTGTACTGGTTCCATACAAAGGTCTTCTCTGCTAGAAGTGCAGTTACCTCGGAATTCCTCTCTGATGCAAGCTTTTCATATGCCTTTTGTAATCTCTGTACCTCGATCTTCAAGGCTTTAGAATTTCGTGTTTTTTCGTTAGATTTTCCAGTTTGCAGTGAGCTTCTTGAAGAAACATCCTGAAACTATTTGA

mRNA sequence

ATGGAGAGAAGAGGGCCAGCATGGAAACAAGGATGGGCGGAGCAGGCCATAGCCTCCATAACTCCACCACCAAGGCCTCTGCTTGCCATACTTGGAATCTTGGTCATTCTGCTATCTGTGTCATCATTTTCAAGCCACAGGTCACAGGTGAAGACAACAAGGATCAACTTTAAGCTCTTCTTCTTGCTCTTACCTCTAGTATTTGTCTTTGTTGGAAACTCCATTGTTAGATATGGTCGTCTTGTAATCATCACTCCGAGAACAAAGCTCGAGCCGGTTTACGTCACCGACGACACTGCGTCGCCTTTGGGCGTGGCGGCAGAGATAAACAATGAAACATGGAAATACAGACAGATAATCAGAGATATCTGCAAGGAAACAACTTACACTTGCATGTTTGCAGTGAGCTTCTTGAAGAAACATCCTGAAACTATTTGA

Coding sequence (CDS)

ATGGAGAGAAGAGGGCCAGCATGGAAACAAGGATGGGCGGAGCAGGCCATAGCCTCCATAACTCCACCACCAAGGCCTCTGCTTGCCATACTTGGAATCTTGGTCATTCTGCTATCTGTGTCATCATTTTCAAGCCACAGGTCACAGGTGAAGACAACAAGGATCAACTTTAAGCTCTTCTTCTTGCTCTTACCTCTAGTATTTGTCTTTGTTGGAAACTCCATTGTTAGATATGGTCGTCTTGTAATCATCACTCCGAGAACAAAGCTCGAGCCGGTTTACGTCACCGACGACACTGCGTCGCCTTTGGGCGTGGCGGCAGAGATAAACAATGAAACATGGAAATACAGACAGATAATCAGAGATATCTGCAAGGAAACAACTTACACTTGCATGTTTGCAGTGAGCTTCTTGAAGAAACATCCTGAAACTATTTGA

Protein sequence

MERRGPAWKQGWAEQAIASITPPPRPLLAILGILVILLSVSSFSSHRSQVKTTRINFKLFFLLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVTDDTASPLGVAAEINNETWKYRQIIRDICKETTYTCMFAVSFLKKHPETI

Homology

[Close]

BLAST of Cp4.1LG11g02540 vs. NCBI nr
Match: KAG6598502.1 (hypothetical protein SDJN03_08280, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 202 bits (514), Expect = 4.08e-64
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 2   ERRGPAWKQGWAEQAIASITPPPRPLLAILGILVILLSVSSFSSHRSQVKTTRINFKLFF 61
           ERRGPAWKQGWAEQAIASITPPP+PLLAILGILVILLSVSSFSSHRSQVKTTRINFKLFF
Sbjct: 7   ERRGPAWKQGWAEQAIASITPPPKPLLAILGILVILLSVSSFSSHRSQVKTTRINFKLFF 66

Query: 62  LLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVTDDTASPLGVA 106
           LLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVTDDTASPLGVA
Sbjct: 67  LLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVTDDTASPLGVA 111

[Close]

BLAST of Cp4.1LG11g02540 vs. NCBI nr
Match: KAG7029438.1 (hypothetical protein SDJN02_07777, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196 bits (497), Expect = 1.58e-61
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 2   ERRGPAWKQGWAEQAIASITPPPRPLLAILGILVILLSVSSFSSHRSQVKTTRINFKLFF 61
           ERRGPAWKQGWAEQAIASITPPP+PLLAILGILVILLSVSSFS+HRSQVKTT INFKLFF
Sbjct: 7   ERRGPAWKQGWAEQAIASITPPPKPLLAILGILVILLSVSSFSNHRSQVKTTGINFKLFF 66

Query: 62  LLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVTDDTASPLGVA 106
           LLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVTD TASPLGVA
Sbjct: 67  LLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVTDHTASPLGVA 111

[Close]

BLAST of Cp4.1LG11g02540 vs. NCBI nr
Match: XP_031737284.1 (uncharacterized protein LOC116402215 [Cucumis sativus] >KAA0065163.1 hypothetical protein E6C27_scaffold82G004990 [Cucumis melo var. makuwa] >KGN62679.1 hypothetical protein Csa_022299 [Cucumis sativus])

HSP 1 Score: 181 bits (459), Expect = 1.03e-55
Identity = 95/107 (88.79%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 2   ERRGPAWKQGWAEQAIASITPPPRPLLAILGILVILLSVSSFSSHRSQVKTTRINFKLFF 61
           ERRGPAWKQGWAEQA++SITPPPRPLLAILGILVILLSVSS+SS+RSQVK TRINFKLFF
Sbjct: 7   ERRGPAWKQGWAEQALSSITPPPRPLLAILGILVILLSVSSYSSYRSQVKKTRINFKLFF 66

Query: 62  LLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVTDD--TASPLGVA 106
           LLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVT+   +ASP G A
Sbjct: 67  LLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVTEGAASASPWGAA 113

[Close]

BLAST of Cp4.1LG11g02540 vs. NCBI nr
Match: KAG7020455.1 (hypothetical protein SDJN02_17139, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178 bits (451), Expect = 1.64e-54
Identity = 91/107 (85.05%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 2   ERRGPAWKQGWAEQAIASITPPPRPLLAILGILVILLSVSSFSSHRSQVKTTRINFKLFF 61
           ERRGP+WKQGWAEQA+ASI PPPRPLLA+LGILVILLSVSS+SS+RSQVK T++NFK+FF
Sbjct: 7   ERRGPSWKQGWAEQALASIAPPPRPLLAVLGILVILLSVSSYSSYRSQVKRTKVNFKIFF 66

Query: 62  LLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVTDDTA-SPLGVAA 107
           LLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYV + TA SP G AA
Sbjct: 67  LLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVAEGTAASPWGAAA 113

[Close]

BLAST of Cp4.1LG11g02540 vs. NCBI nr
Match: KAE8057246.1 (hypothetical protein FH972_013952 [Carpinus fangiana])

HSP 1 Score: 113 bits (283), Expect = 5.51e-29
Identity = 53/93 (56.99%), Postives = 73/93 (78.49%), Query Frame = 0


Query: 2  ERRGPAWKQGWAEQAIASITPPPRPLLAILGILVILLSVSSFSSHRSQVKTTRINFKLFF 61
          ERRGPAWKQGW EQ + SI+PPP PLL I GI+V+LL +SS+++++SQ+  T INFK F 
Sbjct: 7  ERRGPAWKQGWTEQTLHSISPPPMPLLTIAGIMVLLLLLSSYTNYKSQMHQTIINFKFFL 66

Query: 62 LLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVY 94
           LLPL+ +FV + I +YGR+VI+ P TK++ V+
Sbjct: 67 FLLPLLLIFVMHMITKYGRIVILAPITKIDAVH 99

[Close]

BLAST of Cp4.1LG11g02540 vs. ExPASy TrEMBL
Match: A0A5A7VAG3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004990 PE=4 SV=1)

HSP 1 Score: 181 bits (459), Expect = 4.97e-56
Identity = 95/107 (88.79%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 2   ERRGPAWKQGWAEQAIASITPPPRPLLAILGILVILLSVSSFSSHRSQVKTTRINFKLFF 61
           ERRGPAWKQGWAEQA++SITPPPRPLLAILGILVILLSVSS+SS+RSQVK TRINFKLFF
Sbjct: 7   ERRGPAWKQGWAEQALSSITPPPRPLLAILGILVILLSVSSYSSYRSQVKKTRINFKLFF 66

Query: 62  LLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVTDD--TASPLGVA 106
           LLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVT+   +ASP G A
Sbjct: 67  LLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVTEGAASASPWGAA 113

[Close]

BLAST of Cp4.1LG11g02540 vs. ExPASy TrEMBL
Match: A0A0A0LNS9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368800 PE=4 SV=1)

HSP 1 Score: 181 bits (459), Expect = 4.97e-56
Identity = 95/107 (88.79%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 2   ERRGPAWKQGWAEQAIASITPPPRPLLAILGILVILLSVSSFSSHRSQVKTTRINFKLFF 61
           ERRGPAWKQGWAEQA++SITPPPRPLLAILGILVILLSVSS+SS+RSQVK TRINFKLFF
Sbjct: 7   ERRGPAWKQGWAEQALSSITPPPRPLLAILGILVILLSVSSYSSYRSQVKKTRINFKLFF 66

Query: 62  LLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVTDD--TASPLGVA 106
           LLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVT+   +ASP G A
Sbjct: 67  LLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVTEGAASASPWGAA 113

[Close]

BLAST of Cp4.1LG11g02540 vs. ExPASy TrEMBL
Match: A0A5N6R8L3 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013952 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 2.67e-29
Identity = 53/93 (56.99%), Postives = 73/93 (78.49%), Query Frame = 0


Query: 2  ERRGPAWKQGWAEQAIASITPPPRPLLAILGILVILLSVSSFSSHRSQVKTTRINFKLFF 61
          ERRGPAWKQGW EQ + SI+PPP PLL I GI+V+LL +SS+++++SQ+  T INFK F 
Sbjct: 7  ERRGPAWKQGWTEQTLHSISPPPMPLLTIAGIMVLLLLLSSYTNYKSQMHQTIINFKFFL 66

Query: 62 LLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVY 94
           LLPL+ +FV + I +YGR+VI+ P TK++ V+
Sbjct: 67 FLLPLLLIFVMHMITKYGRIVILAPITKIDAVH 99

[Close]

BLAST of Cp4.1LG11g02540 vs. ExPASy TrEMBL
Match: A0A2P5F7W0 (Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_102820 PE=4 SV=1)

HSP 1 Score: 113 bits (282), Expect = 3.27e-29
Identity = 52/100 (52.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 7   AWKQGWAEQAIASITPPPRPLLAILGILVILLSVSSFSSHRSQVKTTRINFKLFFLLLPL 66
           +WK GW E+ +AS++ PP PL+AI+GI+V+LLS+SS+++++SQV+ T I FKLF L LPL
Sbjct: 12  SWKVGWTERTLASLSAPPLPLVAIVGIVVVLLSISSYANYKSQVQQTMIGFKLFLLFLPL 71

Query: 67  VFVFVGNSIVRYGRLVIITPRTKLEPVYVTDDTASPLGVA 106
           + +F+ NS+ +YG + II+PRTK EP   +    SP GVA
Sbjct: 72  LLIFLANSVTKYGSVYIISPRTKREPATASQGGGSPWGVA 111

[Close]

BLAST of Cp4.1LG11g02540 vs. ExPASy TrEMBL
Match: A0A2P5DBR5 (Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_077530 PE=4 SV=1)

HSP 1 Score: 110 bits (276), Expect = 2.64e-28
Identity = 51/100 (51.00%), Postives = 75/100 (75.00%), Query Frame = 0


Query: 7   AWKQGWAEQAIASITPPPRPLLAILGILVILLSVSSFSSHRSQVKTTRINFKLFFLLLPL 66
           +WK GW E+ +AS++ PP PL+A++GI+V+LLS+SS+++++SQV+ T I FKLF L LPL
Sbjct: 12  SWKVGWTERTLASLSAPPLPLVAMVGIVVVLLSISSYANYKSQVQKTMIGFKLFLLFLPL 71

Query: 67  VFVFVGNSIVRYGRLVIITPRTKLEPVYVTDDTASPLGVA 106
           + +F+ NS+ +YG L II+P TK EP   +    SP GVA
Sbjct: 72  LLIFLANSVTKYGSLYIISPTTKREPATASQGGGSPWGVA 111

[Close]

BLAST of Cp4.1LG11g02540 vs. TAIR 10
Match: AT5G42146.1 (unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 71.2 bits (173), Expect = 7.5e-13
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 2  ERRGPAWKQGWAEQAIASITPPPRPLLAILGILVILLSVSSFSSHRSQVKTTRINFKLFF 61
          ERRG +WK+GW E+ + + + PP  LLA+L I+ +LL +SS+  ++ +V+ T  N KLF 
Sbjct: 7  ERRGGSWKRGWLEETLLTSSAPPLTLLALLAIISLLLFLSSYPRYKYEVEKTAANLKLFM 66

Query: 62 LLLPLVFVFVGNSIVRYGRLV 83
          L LP++FVFV  S+    RL+
Sbjct: 67 LFLPILFVFVLVSLSFVHRLL 87

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g02540 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g02540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598502.1	4.08e-64	99.05	hypothetical protein SDJN03_08280, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7029438.1	1.58e-61	96.19	hypothetical protein SDJN02_07777, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_031737284.1	1.03e-55	88.79	uncharacterized protein LOC116402215 [Cucumis sativus] >KAA0065163.1 hypothetica...	[more]
KAG7020455.1	1.64e-54	85.05	hypothetical protein SDJN02_17139, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAE8057246.1	5.51e-29	56.99	hypothetical protein FH972_013952 [Carpinus fangiana]	[more]

BLAST of Cp4.1LG11g02540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VAG3	4.97e-56	88.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LNS9	4.97e-56	88.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368800 PE=4 SV=1	[more]
A0A5N6R8L3	2.67e-29	56.99	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013952 PE=4 SV=1	[more]
A0A2P5F7W0	3.27e-29	52.00	Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_102820 PE=4 SV=1	[more]
A0A2P5DBR5	2.64e-28	51.00	Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_077530 PE=4...	[more]

BLAST of Cp4.1LG11g02540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42146.1	7.5e-13	44.44	unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306:SF26	PROTEIN, PUTATIVE-RELATED	coord: 2..107
None	No IPR available	PANTHER	PTHR33306	EXPRESSED PROTEIN-RELATED-RELATED	coord: 2..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g02540.1	Cp4.1LG11g02540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane