Cp4.1LG11g02350 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g02350
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG11: 1244338 .. 1249892 (-)
RNA-Seq Expression	Cp4.1LG11g02350
Synteny	Cp4.1LG11g02350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAACCGGAGATAGTGAGTGATTGTTTTTCCATGAATCTGCTGCGATCAGAGGCGATGCAATTGGTGCATCTGATCATAATGAATTGGCGCACCGGATCATTTCATATCTCGGTCTCTTCCAATTCAACGATGTGAGTCACATTACATTCGAAATGATCTTCTGGTGTTGGATCTTCTTGTGTATCATGTTTGACGCAATATCTACCACTCCTAAGTGTGCATAGATATGAAAATATTATTACTCAACGAAAGAATACAGATTTAAGAATAAGAATAAAGAATTGGGATCGAATGTTCTATCTTCATTGATATTCATCACCTTTAAATAGGATACAAGATACTAAATAATATCTACCAAGAAAATATAAACTAACTAAATACTGATAATAAAATAAAATATACTACTATTCAAATTCAACTGATTACGATATCTAAAATATATTTCCTAACTAATATATTCTGGAAGATTACGAATATCATATATTCCATAACTAATTCAAACTAAAATAAGTTGCACTAAATTGTGACAATGTTAGGCTCAGTTTCTCTGTTCTTAAACGTCATTTTCATTCTAATTCTGAGTTGCTATTTGATTTTTCATTTTAATATGCGTTAATGTAGATTTCTGAAGATTTCTACATGATCTGATATTTTTCTGTCGATGATAATTCCTGGACTATCCTTAAGCAATTAAGCATTCACAAGTTGATTTAGGCTCCGTTCTCTGTTCTTCATCGTCACTTTCACTGTAATTCTGAATTTGCTATTTGATTTTTCATTTTCGTATGCGCTAATGTAGATTTCTGAAGCTTTCTACATGATCTGATATTTTTCTATCGATGATAATTCCTGGACTATCCTTAAGCAATTAAGCATTCACAAGTTGATTTCATTTTTCGCACAAGTTGATTTAGGCTCCGTTTTCTGTTCTTAATTGTCATTTTCATTGTAATTCTGAGTTTGCTATTTGATGTTTCATTTTCGTATGCGCTAATGTAGATTTCTGAAGCTTTCTACATGATCTTCTTTTTCTGTCGATGATAATTCCTGGACTATACTTGAGCAATTAAGCATTCACAAGTTGATTTCATTTTGTGCACAAGATTTATATTTACATATCGTGAATCACCTTGGTTGTCATGTTAGGTTCCATTTCTTTGTTCGTAATTGTCAATGTCACTGTGATTCTGAGTTTACTACTTGAATTCAGTTTTCGTAAAGGCTAATGTAGGTTTGCCATGTTCTGTACACAATCTTTAATCTTAAAATTTTCTTTTGATGATAACGCCTGGATTACTTTAGCAATTAAGTATTCATTAGTGGATTTCTTTTTGCATACAAAACATATATTTACATTATTCACAAGCGGATCTTCTTTGTTATCGAGTTACGTTCAGTTTCTTTTTTTGTAATCGCAATGTCATTACAATTCTGAGCTTACTACTTGAATTTAGTTTTGTAAACACTAATGTAGGTTCCTAAGTGAACTTTACTTTCAATTTTTATTTTGATGATAATTTATGAACTGTACTTAAAGTAAACGTTTACTTGAATGGATTCTGATTTATTTTGTGTTCTATATTGGCAGACATCATTGAGAATTTGTCTCACTGACATCATCGCACTATGTCGAAATTCTTGCTTCTTGTTTGCATTCCGACTTTCTATTCTTGTCAATAGCATCTGATCGTCTACTTTTCCTCTTTAGCTCAATGCATCTAGAAGCCCATTCCAGAGGACGTATGCTGCCCAGGTGTGTTTACTATTTCTCTGATTTTTGCTTAAAGCTTCGTTCCAGGTCTGAATCTAGCTTTTCGCGAACTTGAGACAAGGATTGCATTTCTAAATTGAAATTTCTGATTCTAATAAGTAGCAGCACATAATTGCCGTAAATGGACAGTATTAGCCTATTAGGTCTTTGGTAATATGGCAGAATGAATTGCCTGGAGACTTGAGTTTTCTTCGACTCTTAACTTACTTTGATGCCAATGTTTCTGTCATCGTTGGTTCATTTACTTGCATGATAAATTTTCAGATTTGTATTCAAGCGAAGTGAGGTGTATAACATTGATAGAAACTTTTGAGAAATTATATTTCCATTCTTGAACCTAGATAAATTTCTAGCTAGTAAGATTGAATGACATGAGAATGTAACGTTATTGTGATGAGTGTACTTCAGTTATAGTATGCTTGGTCTAGTGATTACGAGTAATAAATAAGTACTATAGACTCTACGACAACATGCTTATAAGTAGTGTGTGAACACAACATTTGAGTATTTTTTTATTCTTTGTGCCTTTCCTTTCTTTTTTGGGCATACAAGTGTGGTTCTGAACTCTGCTTGAATCTGTCTTCTCTTTCCTCTAGATGATGCCTATACTTGTGCTGTTAGTGTCATAACTTATAAGTTTCTTTACAGATTAATAACTATATAATACTTCAGTCCCTTGTCGATAATAGGTTCTACTGGTGTATTATAGTTGCAGCAGTATTTGTGGCATAAAGCTGAAGGGGGTTTAGTGTAGTGCCATTCCATTCTACTGTTGAGGAAAAATAACGATTTAAATCCAGTAGCTTGACCTTGACTTTGACAGGTTAAACTTGGAGAATTTGAGGCACAGTCGTTAGAGATAAATGACAACAACGAGAAGTTACAACGCAATTATAGTGAGCAATTGGAAGATAAGCTTGTACTTCAGAAGGCATGGGATGTTTTTATTGATAAGGAGTTACTATAATTCTGTTAGTCTTTACTCTTTTGTAATGTTGCATACTTATACATCGAGGTTATTTTATCATCTATGATTAATAAAGCTAGCATGTTGCCAATTCGATGGCAATTACTTTGAATTCCTGTGATTTGCAGCCTGCAGAAGATGACTTATTACTTTTTATATGGTTTCAGGTTGGTGAGTTTTTCCATCTAGCTCAAAGCATAGCTGCAGCTGAGCAAAGAGAACAGGAAGTGCAGCAAAACAGGGAAGGATCCATTGACAGTCCCTTATTACTGGAACAAGTATGTTTTTGTTGTCTTAGTGTTGGCTGGACATTTATTGTCCTCTTTTGAGTAGTAGCTAGGACTTTGTTATGGCTTGTAGGAAATGACAATGGATCCAACAAAACAAGTTAAACTAGGATATTTCAGTGGTCTACTTCCGAGATAAAAGTCTATGGCTTTTGAAATGATTTTTTTATCGTTCAACTAGGGGCAATGTGTATCTGAGACAAGCTGTGGTTGATGGTTCCATCACTGATCCTGTATCTGGGGTGAAGGTTAGCAACGGGAATCCCTTATTTACAGTAGTCAGCATTACAAAATGATGAATTCTATTTGTTTTCTCTTTCTATAATTGGGTTACAGTCAACAAATATGGAGTTGGACCAAAATCTTTTTTTTTTTCCCTGAAAGTTTTTTTCATTTTTCCTGAAACGATTTGTTACCCCATATTGTTCTTTAAGGTCTTGCCATTGTAAAACTCACATCTGAATTCCAGGTCGAGAAAAATGTGTTTGTCATATTTTATTCTGGAGAGAGAGCAAAGGATAAAATTCTGAAAATAGGCGAAGCTTTTGCAATGTTACCCATTCACTGATGACTTGGTCAAACAATTTCAGATTATTACAGAGGTAATCACGATTGTTATTGTACAATGTCGCACTTTGTTAATTCTTCTTGCTTTTGAGGACTTTTTACAGTCTATTCTCTTGCTCTCTTTGTCTCTGGTAATCTATTCCGTATTTAAATGTCCAAATATCATTAACTGCATCTGAGCAGCTTATAAATACGTACTAATTAAAACTGTACGTTATACTCCATGGTAGTTGCAACCACTCCAAGCATGAGCAGAATATTCTGAAACTGTTGCTTTTTGTAGTCCTTCATTAAAGATATAAGTCAATCATCTTCTTGTTTGACTATAAGCATAAAATCCTGCTCCTACTCTCTTCCTACTATATACTTTATGGTAAGAGAAACCTAAAGATGAGCAGCTATTAGTCAACTATTTTCTTGTTTGGATGGATGTGGTCAGAAGAGAAGATTGCATCCATTACAACACACCCTCCTCTTACTCTCTTCCTACTTTACACTTTAGTCATAAAGGATGTAGCATGAACTTGCCGAATGACTCCACAGAATTTGGAATGAGTAAGACTAAACAACATCAAAGTTATCACTAGTGATTGAGATCCTAAATTGTTTAGGCATTTTTAGAGACCATTATAGAGAGGTTCTGATCAACCTTGAAGGTCTGTACTGCGGTCATCATTCACAAATCCATGAACTAATTAATGTTGAGGCTCGGTCAACATTATGTTCAGTTCCATATTTCTACGTAACCTCAGGAAGAGTATTTTTTTTTTTAAGAGGGACAAATTGTCATCCTCTGTAAAATTGGCGTCGGAAATGAGTTGGCTACGCTATCTCGATTCAGATTGCTTATAGACTGCATCCTGCATCACCAATGATTTTCCAGCAATTCTACATTCGGTCCAGCGTTGTTGTTTACAATTAGTTTCTATACCAGTTTCCTTTGCCTCGCTTTGGCAGTTGTTGAGAGAGTTTCTAGCAGGTTTCTCGGCATGAAAAGAGTTACAAGTTGCTCAACTTGGTCGGATTTGAAGTAGTGAAATCAGAATATCAACCTGGGGTTGTCACGTCATGATATCTACATTTGTCTTCTTTCCTCTTAATTAGTTGGTAGCCTTTCGGAATTATACGAGGGATAGGTTGCTTAAATATTTCCCTCAAACCATGCAAGAAATCAAGTTCTGTTGATGCTAATCTCTTATCCAGTGGATGCTAATCTCTTATGCAGCTTCATCAGAAAATAGGGCTAGATGGTTGCAAAGTAGTTAGTCTTGCCATTGTTTCAAAGCTTGCAAAATAGCATAAAATTCCAAGACGTAGGTTGAATACCTTCCACTATGGGTGAGTTCTTTCAATCAAGTTCTGCTGTCTTTTTATTATCTCAGGAGTCTGATTGCATACTTTATTTTTAGGAAAGCGAAGGAATTATATAAGAGTTAGGGTAACAAAAACCACTAAAGGATGTTGGCAATATTTCGAATCATTTCCTTGGTCCAGAAATTAAGAAATGACATTCTTTTATTTTGTTTGATAGATTGGAATGGTAGGAACGTACAAGATCGTGAGCACATCTGTCTGTATATAAGTTTTGACTTTTGGGTACCCAGTGAAGTGCAGGGGACAAAGTTTAATCGTTGCCTATACTGTGCCTATGGAAAAAGTACCACTAATTCAAAGTGGGGTGATTTGATATCGGTGGTCATTACCATTTTAGTTGTACTATATGAAATTGCAAAGTTCTCCATGTGAATTGGTAAAAAGAGGACATCTTTTTGTCCTGGAGATTTACCTAAATTTTTTGGTCGATTTATTTCTTTCATTTGTTTTATATCTCCAAGCGTATTTAATGTGCAGATGCCCAAGGCAAATAGTGAATTGCAGGGTAGAGTCTACTCTATTGAAACTTTCCCTTTCCTATTTGCTGTAATGTTTGGTGATTGCCATGGAATATGCTTATTGCTGGCA

mRNA sequence

CTAACCGGAGATAGTGAGTGATTGTTTTTCCATGAATCTGCTGCGATCAGAGGCGATGCAATTGGTGCATCTGATCATAATGAATTGGCGCACCGGATCATTTCATATCTCGGTCTCTTCCAATTCAACGATCTCAATGCATCTAGAAGCCCATTCCAGAGGACGTATGCTGCCCAGGTTAAACTTGGAGAATTTGAGGCACAGTCGTTAGAGATAAATGACAACAACGAGAAGTTACAACGCAATTATAGTGAGCAATTGGAAGATAAGCTTGTACTTCAGAAGGCATGGGATGTTGGTGAGTTTTTCCATCTAGCTCAAAGCATAGCTGCAGCTGAGCAAAGAGAACAGGAAGTGCAGCAAAACAGGGAAGGATCCATTGACAGTCCCTTATTACTGGAACAACTAGGACTTTGTTATGGCTTGGGCAATGTGTATCTGAGACAAGCTGTGGTTGATGGTTCCATCACTGATCCTGTATCTGGGGTGAAGGTCGAGAAAAATGTGTTTGTCATATTTTATTCTGGAGAGAGAGCAAAGGATAAAATTCTGAAAATAGGCGAAGCTTTTGCAATGTTACCCATTCACTGATGACTTGGTCAAACAATTTCAGATTATTACAGAGATGCCCAAGGCAAATAGTGAATTGCAGGGTAGAGTCTACTCTATTGAAACTTTCCCTTTCCTATTTGCTGTAATGTTTGGTGATTGCCATGGAATATGCTTATTGCTGGCA

Coding sequence (CDS)

ATGAATCTGCTGCGATCAGAGGCGATGCAATTGGTGCATCTGATCATAATGAATTGGCGCACCGGATCATTTCATATCTCGGTCTCTTCCAATTCAACGATCTCAATGCATCTAGAAGCCCATTCCAGAGGACGTATGCTGCCCAGGTTAAACTTGGAGAATTTGAGGCACAGTCGTTAG

Protein sequence

MNLLRSEAMQLVHLIIMNWRTGSFHISVSSNSTISMHLEAHSRGRMLPRLNLENLRHSR

Homology

[Close]

BLAST of Cp4.1LG11g02350 vs. NCBI nr
Match: XP_022962368.1 (V-type proton ATPase subunit a3-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 49.7 bits (117), Expect = 2.81e-05
Identity = 25/27 (92.59%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 32 STISMHLEAHSRGRMLPRLNLENLRHS 58
          S ISMHLEAHSRGRMLPRLNLENLR S
Sbjct: 10 SIISMHLEAHSRGRMLPRLNLENLRQS 36

[Close]

BLAST of Cp4.1LG11g02350 vs. NCBI nr
Match: XP_022962367.1 (V-type proton ATPase subunit a3-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 47.0 bits (110), Expect = 3.01e-04
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0


Query: 35 SMHLEAHSRGRMLPRLNLENLRHS 58
          SMHLEAHSRGRMLPRLNLENLR S
Sbjct: 29 SMHLEAHSRGRMLPRLNLENLRQS 52

[Close]

BLAST of Cp4.1LG11g02350 vs. NCBI nr
Match: XP_022962364.1 (V-type proton ATPase subunit a3-like isoform X1 [Cucurbita moschata] >XP_022962366.1 V-type proton ATPase subunit a3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 47.0 bits (110), Expect = 3.46e-04
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0


Query: 35 SMHLEAHSRGRMLPRLNLENLRHS 58
          SMHLEAHSRGRMLPRLNLENLR S
Sbjct: 29 SMHLEAHSRGRMLPRLNLENLRQS 52

[Close]

BLAST of Cp4.1LG11g02350 vs. NCBI nr
Match: XP_022962369.1 (V-type proton ATPase subunit a3-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 45.4 bits (106), Expect = 9.67e-04
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 0


Query: 36 MHLEAHSRGRMLPRLNLENLRHS 58
          MHLEAHSRGRMLPRLNLENLR S
Sbjct: 1  MHLEAHSRGRMLPRLNLENLRQS 23

[Close]

BLAST of Cp4.1LG11g02350 vs. ExPASy TrEMBL
Match: A0A6J1HEL7 (V-type proton ATPase subunit a OS=Cucurbita moschata OX=3662 GN=LOC111462834 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.36e-05
Identity = 25/27 (92.59%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 32 STISMHLEAHSRGRMLPRLNLENLRHS 58
          S ISMHLEAHSRGRMLPRLNLENLR S
Sbjct: 10 SIISMHLEAHSRGRMLPRLNLENLRQS 36

[Close]

BLAST of Cp4.1LG11g02350 vs. ExPASy TrEMBL
Match: A0A6J1HCJ3 (V-type proton ATPase subunit a3-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462834 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.46e-04
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0


Query: 35 SMHLEAHSRGRMLPRLNLENLRHS 58
          SMHLEAHSRGRMLPRLNLENLR S
Sbjct: 29 SMHLEAHSRGRMLPRLNLENLRQS 52

[Close]

BLAST of Cp4.1LG11g02350 vs. ExPASy TrEMBL
Match: A0A6J1HCX2 (V-type proton ATPase subunit a OS=Cucurbita moschata OX=3662 GN=LOC111462834 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.67e-04
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0


Query: 35 SMHLEAHSRGRMLPRLNLENLRHS 58
          SMHLEAHSRGRMLPRLNLENLR S
Sbjct: 29 SMHLEAHSRGRMLPRLNLENLRQS 52

[Close]

BLAST of Cp4.1LG11g02350 vs. ExPASy TrEMBL
Match: A0A6J1HGW2 (V-type proton ATPase subunit a OS=Cucurbita moschata OX=3662 GN=LOC111462834 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.68e-04
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 0


Query: 36 MHLEAHSRGRMLPRLNLENLRHS 58
          MHLEAHSRGRMLPRLNLENLR S
Sbjct: 1  MHLEAHSRGRMLPRLNLENLRQS 23

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g02350 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g02350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962368.1	2.81e-05	92.59	V-type proton ATPase subunit a3-like isoform X3 [Cucurbita moschata]	[more]
XP_022962367.1	3.01e-04	95.83	V-type proton ATPase subunit a3-like isoform X2 [Cucurbita moschata]	[more]
XP_022962364.1	3.46e-04	95.83	V-type proton ATPase subunit a3-like isoform X1 [Cucurbita moschata] >XP_0229623...	[more]
XP_022962369.1	9.67e-04	95.65	V-type proton ATPase subunit a3-like isoform X4 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG11g02350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HEL7	1.36e-05	92.59	V-type proton ATPase subunit a OS=Cucurbita moschata OX=3662 GN=LOC111462834 PE=...	[more]
A0A6J1HCJ3	1.46e-04	95.83	V-type proton ATPase subunit a3-like isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HCX2	1.67e-04	95.83	V-type proton ATPase subunit a OS=Cucurbita moschata OX=3662 GN=LOC111462834 PE=...	[more]
A0A6J1HGW2	4.68e-04	95.65	V-type proton ATPase subunit a OS=Cucurbita moschata OX=3662 GN=LOC111462834 PE=...	[more]

BLAST of Cp4.1LG11g02350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g02350.1	Cp4.1LG11g02350.1	mRNA