Cp4.1LG11g02010 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG11g02010
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG11: 1112597 .. 1116079 (+)
RNA-Seq ExpressionCp4.1LG11g02010
SyntenyCp4.1LG11g02010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCACACTTCACTTTCCCGCCAATTCGTCTTCTTCTAATCTAGAGAAGAATCAATACAAATCCATCGTCTCTTCTTCCATCTCCACCTTCTGCTTCGAGCTTGTTGTGCCTTTCAATGGCTTCTTCCTCCAATCCCTCATTGTTGCTTCATCTGCTACTCGTTCAACGTTGTTTATTCCATTGGATTCCTGGCGTTCATGCTGCACTCTCGTCCTGTTTTCACCGTCTACAGGTCCGTATCATAAATAGCAGTTCCGTGTCGATTCTGGTTCTTGATGTCTGTTCACATCGAAATTTATGTTTATTCACATTTTTCTCAAACTGTTGTTCGTTTTTCAACTCAGGATGAAATGTTCGATCAGTCATTTGAATCCATTTTATCAGAAAAGTTACTCATCTCTGCTATCAGGATCTACATGCGGCAACCTCGTCTACAGGTCGGCTGAATAGATCTCAGTGCGATGACTGATTTGGTAATTGTTCGGCGTGAAGTTAGTATTGAATCATTGATCCATAACCTTCCTCAAAATTTATTGTTTCTTTTTTACCTCAGAATTTTGAAGTGGTTTGACGGTCATCTTCTTGCACAGATTTTAGTAAAGAAGCTATTTCATTCTGTCTCAAATTTACATAACACTTATCAAGAAGTTACGGTATGACTCTTCAATCACTATTTATTTTTCGTTTGTTCACTTATTATTCTTGCTCCAAATGTTCTGTTGATCACTTGGCTGATGAAACGCTGGTGAGTAAATAATTGAATTGATCCCTCCACTCTATACTGATTAGACGTAACAATAACATTTGCTAGCCTGTAGAATAGGAGTATCATTTGTAGGTATAAACAAAAAAAGCAAACATATATATGGCATGATATTCTTTTCTTTTGAAATAATTGATGCACTCTGTGATACATCATCTTTTTACAGTTCGAATTGTCAGGTGACAAACCTTTTTATAAATATTTGTGAATTTTTTAAGCTCTGTAGTTCGATTGTGATGCAAAAATATGGGTGCAAGATGCTCCTTTATAATGATTGGAAAGCGAATGAAACAGTACTCACACTAGTACACAAAAGCAGCATTATCGGGTACTTGAACAAACAGGTTAAGGCTTACAATAGTTTAGTTGGCTTCACAGGTTAGCATTATATGCTTGAAAGGACAAACAGAGCGGGAAAGTAGAGAAACACTGACACGAAGCATATTCTCGTAATTATCGAGAACAACGCTTCTGCAGCTCTTATTATATCATCGGTATAATACCTCTTCTTTATTGGAGCTTTAGATTCTTCATGAGCCTGCAATAGTTCAAAGAGAACATTAGAAAGATTAGTTAAATGTTTCTAAATGTGAATATATGGACAACTAATTCTACTAGGAGGCAGTGGTATACTTCACGGCGAGTTCTTGGGCCTACTCGATGTTTAATTAACGCAACCCACGTTAGCTTAAAAGTTCTTTAATTAGTACTGAAGTAGATCCAAATGTTAAAGAAGGGATTTATAAATACGTAGATGTCTGAACTCAGAAATACAGGACCATGTGCATGTAATTTAAAGCATGGGAGATTCGGTTTCACGTTGTCTTTTTCTTAGAAAGGGGAAGGAGAATGCATGAATAGGAATAGCATGAAGCCTTATAAAAACAATATTTTTATGAGAGTTGTCGGTGTTGGGTTTAAGTTGTAGCTACTTGAGTAGGAAAAGAGAGCGTGGTACGTTAGGATACGCGGACAAGCTACTTCGTAAGAAGATGAAATAGCATCTTCTTTCTCTCCTCCGCCCACGTACTGTTCGTAGAAATTCAGTTGGGAATGATTATTTCCTTTTAGATAAGCTTGCAGTCATTCTTGATACTATGGAGCTACTAGAGGTTAGATGAACACGACTCTCCACAATGGTATGATATTGTCCACTTTGAACATAACCTCTCATGATTTTGCTTTGGGTTTCTCTAAAAGGATTCATTCCAATGGAAATAATATTCCTTAATTATAAATCCATGATCACTTTTTAAGTTGATTGACGTGGGACTTTCATCTAACATTAGAAACCTGACTACAGCTTCGGACTTTCGATGCATAAATGATTCAAACATGTCTAACATCTACTCAGAAAGGAAAGTTTTATGGTATATAGATAAATAAAGTTAGTTCTACTCTTACGAGTTCTTTTGGGAGGTTGGTTCTCCTAGCAAAGATGAATCACGTTATTTTGAAGGTCTTTTCCCCTATGAGCTAAATACTCAGAGATCTTGATGACTTAACGAGAATGAAAGTAGGATAGAGACTTGACATGTGACATAAAAAAGACGCCTAAGAGTAGAAAGCTCGGTACCTCTGCTCATCACCATACACTGTACCGTTGGATACAATGGGCTTGTAGTTGGGGAGAGGTATCTTTCCAGATTCTATATGCATGAGATCTTGCACCAGGATGTCATAATGCCTTTTTACTTCCTCAGCTGTTTTTCCACCCACTGTCCTGGCCACCTTTTGCCACCGGTCTGGTGTGTCCTCGGGATATAAAGCCAGAGCGTCCTCAAATTTTTTGTTTTGCTTAGGCGTCCACGAGGAGCTAGAACTGCCTGAAGATTTAAAAGGGCTTGTTGCCATTGTATAAATGAAGTTAGGGTGGAAAGCTTTGAACGGCGAAGATGATCTAAGTAGGTGAAAATGCTGCAAAGAAAGCCGCACGGAACAAAAAAATATGGTAAGAAGGAGACCTGGGCTCCCTTTTAAGAGATGGCTAAGTCAAGCTATGGTGTGAAAATGTGGGTTCTGAGTGCTTCTTATACACTCAAGGTGATGGTAGTGGGATTAAACAAGTTGAAGAATGCGTTTTAGGGTGATTCCCTTTGCCTGAGGTAGTGCAAGTGACCGACCAAACGGGTCGTAAAATCTTTTCAAACACTGTTTTTTGTCTCTTATAATATCATCACGTCATCAGCAATGGGAAATTCTTGAGAATTTATAGGCTGGTGGAGGGATTAGATCCAATTCTTAGCCTAAGAAATAACACACAGATGCTGCTTTCAATATAAAACTTCCACCTTCCCTCTCTGTAGCTGGTCTTTGGATTGTTGGTTCGCCCTCCTTGCATATTTTCTTCCGCCACTTGCAATAAATTTAAGCCAAGAACGGTAGGACCATCTTTCACTACTTTTTTATACCGGAAAAAACGGCCACCATTGGTACTAGCTCTTTTTGCAACATTAGCTTTGATGTTCAAATTAACTTTTAAAAGAGCCTATAGAATGCCCCCATTCGATAGGCTCTTTAGCAATGGAAACTTTTTAGGGATGCGAAGTAGAAAGGAGAAAGAAAAATTGACACAAGAATCTAAAAAGTACTGTGCGTTTAGCCTTTCACTTTTATTTCCTAAATTTTATATAACAAATTGTGCGGCCTTGATTATTATCGTTGTTGTTCAAGAATAGTTTGGTTCTTGTTGGTTGATTAATTATTTGAAAAAAAAAAAA

mRNA sequence

GCCACACTTCACTTTCCCGCCAATTCGTCTTCTTCTAATCTAGAGAAGAATCAATACAAATCCATCGTCTCTTCTTCCATCTCCACCTTCTGCTTCGAGCTTGTTGTGCCTTTCAATGGCTTCTTCCTCCAATCCCTCATTGTTGCTTCATCTGCTACTCGTTCAACGTTGTTTATTCCATTGGATTCCTGGCGTTCATGCTGCACTCTCGTCCTGTTTTCACCGTCTACAGGATGAAATGTTCGATCAGTCATTTGAATCCATTTTATCAGAAAAGTTACTCATCTCTGCTATCAGGATCTACATGCGGCAACCTCGTCTACAGGTCGGCTGAATAGATCTCAGTGCGATGACTGATTTGGTAATTGTTCGGCGTGAAGTTAGTATTGAATCATTGATCCATAACCTTCCTCAAAATTTATTGTTTCTTTTTTACCTCAGAATTTTGAAGTGGTTTGACGGTCATCTTCTTGCACAGATTTTAGTAAAGAAGCTATTTCATTCTGTCTCAAATTTACATAACACTTATCAAGAAGTTACGGTATGACTCTTCAATCACTATTTATTTTTCGTTTGTTCACTTATTATTCTTGCTCCAAATGTTCTGTTGATCACTTGGCTGATGAAACGCTGGTGAGTAAATAATTGAATTGATCCCTCCACTCTATACTGATTAGACGTAACAATAACATTTGCTAGCCTGTAGAATAGGAGTATCATTTGTAGGTATAAACAAAAAAAGCAAACATATATATGGCATGATATTCTTTTCTTTTGAAATAATTGATGCACTCTGTGATACATCATCTTTTTACAGTTCGAATTGTCAGGTGACAAACCTTTTTATAAATATTTGTGAATTTTTTAAGCTCTGTAGTTCGATTGTGATGCAAAAATATGGGTGCAAGATGCTCCTTTATAATGATTGGAAAGCGAATGAAACAGTACTCACACTAGTACACAAAAGCAGCATTATCGGGTACTTGAACAAACAGGTTAAGGCTTACAATAGTTTAGTTGGCTTCACAGGTTAGCATTATATGCTTGAAAGGACAAACAGAGCGGGAAAGTAGAGAAACACTGACACGAAGCATATTCTCGTAATTATCGAGAACAACGCTTCTGCAGCTCTTATTATATCATCGGTATAATACCTCTTCTTTATTGGAGCTTTAGATTCTTCATGAGCCTGCAATAGTTCAAAGAGAACATTAGAAAGATTAGTTAAATGTTTCTAAATGTGAATATATGGACAACTAATTCTACTAGGAGGCAGTGGTATACTTCACGGCGAGTTCTTGGGCCTACTCGATGTTTAATTAACGCAACCCACGTTAGCTTAAAAGTTCTTTAATTAGTACTGAAGTAGATCCAAATGTTAAAGAAGGGATTTATAAATACGTAGATGTCTGAACTCAGAAATACAGGACCATGTGCATGTAATTTAAAGCATGGGAGATTCGGTTTCACGTTGTCTTTTTCTTAGAAAGGGGAAGGAGAATGCATGAATAGGAATAGCATGAAGCCTTATAAAAACAATATTTTTATGAGAGTTGTCGGTGTTGGGTTTAAGTTGTAGCTACTTGAGTAGGAAAAGAGAGCGTGGTACGTTAGGATACGCGGACAAGCTACTTCGTAAGAAGATGAAATAGCATCTTCTTTCTCTCCTCCGCCCACGTACTGTTCGTAGAAATTCAGTTGGGAATGATTATTTCCTTTTAGATAAGCTTGCAGTCATTCTTGATACTATGGAGCTACTAGAGGTTAGATGAACACGACTCTCCACAATGGTATGATATTGTCCACTTTGAACATAACCTCTCATGATTTTGCTTTGGGTTTCTCTAAAAGGATTCATTCCAATGGAAATAATATTCCTTAATTATAAATCCATGATCACTTTTTAAGTTGATTGACGTGGGACTTTCATCTAACATTAGAAACCTGACTACAGCTTCGGACTTTCGATGCATAAATGATTCAAACATGTCTAACATCTACTCAGAAAGGAAAGTTTTATGGTATATAGATAAATAAAGTTAGTTCTACTCTTACGAGTTCTTTTGGGAGGTTGGTTCTCCTAGCAAAGATGAATCACGTTATTTTGAAGGTCTTTTCCCCTATGAGCTAAATACTCAGAGATCTTGATGACTTAACGAGAATGAAAGTAGGATAGAGACTTGACATGTGACATAAAAAAGACGCCTAAGAGTAGAAAGCTCGGTACCTCTGCTCATCACCATACACTGTACCGTTGGATACAATGGGCTTGTAGTTGGGGAGAGGTATCTTTCCAGATTCTATATGCATGAGATCTTGCACCAGGATGTCATAATGCCTTTTTACTTCCTCAGCTGTTTTTCCACCCACTGTCCTGGCCACCTTTTGCCACCGGTCTGGTGTGTCCTCGGGATATAAAGCCAGAGCGTCCTCAAATTTTTTGTTTTGCTTAGGCGTCCACGAGGAGCTAGAACTGCCTGAAGATTTAAAAGGGCTTGTTGCCATTGTATAAATGAAGTTAGGGTGGAAAGCTTTGAACGGCGAAGATGATCTAAGTAGGTGAAAATGCTGCAAAGAAAGCCGCACGGAACAAAAAAATATGGTAAGAAGGAGACCTGGGCTCCCTTTTAAGAGATGGCTAAGTCAAGCTATGGTGTGAAAATGTGGGTTCTGAGTGCTTCTTATACACTCAAGGTGATGGTAGTGGGATTAAACAAGTTGAAGAATGCGTTTTAGGGTGATTCCCTTTGCCTGAGGTAGTGCAAGTGACCGACCAAACGGGTCGTAAAATCTTTTCAAACACTGTTTTTTGTCTCTTATAATATCATCACGTCATCAGCAATGGGAAATTCTTGAGAATTTATAGGCTGGTGGAGGGATTAGATCCAATTCTTAGCCTAAGAAATAACACACAGATGCTGCTTTCAATATAAAACTTCCACCTTCCCTCTCTGTAGCTGGTCTTTGGATTGTTGGTTCGCCCTCCTTGCATATTTTCTTCCGCCACTTGCAATAAATTTAAGCCAAGAACGGTAGGACCATCTTTCACTACTTTTTTATACCGGAAAAAACGGCCACCATTGGTACTAGCTCTTTTTGCAACATTAGCTTTGATGTTCAAATTAACTTTTAAAAGAGCCTATAGAATGCCCCCATTCGATAGGCTCTTTAGCAATGGAAACTTTTTAGGGATGCGAAGTAGAAAGGAGAAAGAAAAATTGACACAAGAATCTAAAAAGTACTGTGCGTTTAGCCTTTCACTTTTATTTCCTAAATTTTATATAACAAATTGTGCGGCCTTGATTATTATCGTTGTTGTTCAAGAATAGTTTGGTTCTTGTTGGTTGATTAATTATTTGAAAAAAAAAAAA

Coding sequence (CDS)

ATGGCTTCTTCCTCCAATCCCTCATTGTTGCTTCATCTGCTACTCGTTCAACGTTGTTTATTCCATTGGATTCCTGGCGTTCATGCTGCACTCTCGTCCTGTTTTCACCGTCTACAGGATGAAATGTTCGATCAGTCATTTGAATCCATTTTATCAGAAAAGTTACTCATCTCTGCTATCAGGATCTACATGCGGCAACCTCGTCTACAGGTCGGCTGA

Protein sequence

MASSSNPSLLLHLLLVQRCLFHWIPGVHAALSSCFHRLQDEMFDQSFESILSEKLLISAIRIYMRQPRLQVG
Homology
[Close]
BLAST of Cp4.1LG11g02010 vs. NCBI nr
Match: XP_022996691.1 (uncharacterized protein LOC111491859 [Cucurbita maxima])

HSP 1 Score: 141 bits (355), Expect = 1.33e-41
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 0 

Query: 1  MASSSNPSLLLHLLLVQRCLFHWIPGVHAALSSCFHRLQDEMFDQSFESILSEKLLISAI 60
          MASSSNPS LLHLLLVQRCLFHWIPGVHAALS CFHRLQDEMFDQSFESILSEKLLISAI
Sbjct: 1  MASSSNPSFLLHLLLVQRCLFHWIPGVHAALSPCFHRLQDEMFDQSFESILSEKLLISAI 60

Query: 61 RIYMRQPRLQVG 72
          RIYMRQPRLQVG
Sbjct: 61 RIYMRQPRLQVG 72

[Close]
BLAST of Cp4.1LG11g02010 vs. NCBI nr
Match: KAG6598450.1 (hypothetical protein SDJN03_08228, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132 bits (332), Expect = 2.14e-38
Identity = 67/72 (93.06%), Postives = 67/72 (93.06%), Query Frame = 0 

Query: 1  MASSSNPSLLLHLLLVQRCLFHWIPGVHAALSSCFHRLQDEMFDQSFESILSEKLLISAI 60
          MASSS PSLLLHLLLVQRCL HW PGVH ALSSCFHRLQDEMFDQSFESILSEKLLISAI
Sbjct: 1  MASSSKPSLLLHLLLVQRCLVHWNPGVHTALSSCFHRLQDEMFDQSFESILSEKLLISAI 60

Query: 61 RIYMRQPRLQVG 72
          RIYMRQP LQVG
Sbjct: 61 RIYMRQPCLQVG 72

[Close]
BLAST of Cp4.1LG11g02010 vs. NCBI nr
Match: KAG7029391.1 (hypothetical protein SDJN02_07730, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 78.2 bits (191), Expect = 4.35e-17
Identity = 48/72 (66.67%), Postives = 49/72 (68.06%), Query Frame = 0 

Query: 1  MASSSNPSLLLHLLLVQRCLFHWIPGVHAALSSCFHRLQDEMFDQSFESILSEKLLISAI 60
          MASSS PSLLLHLLL                 SC +   DEMFDQSFESILSEKLLISAI
Sbjct: 1  MASSSKPSLLLHLLL----------------GSCSYCTLDEMFDQSFESILSEKLLISAI 56

Query: 61 RIYMRQPRLQVG 72
          RIYMRQP LQVG
Sbjct: 61 RIYMRQPCLQVG 56

[Close]
BLAST of Cp4.1LG11g02010 vs. ExPASy TrEMBL
Match: A0A6J1K5H9 (uncharacterized protein LOC111491859 OS=Cucurbita maxima OX=3661 GN=LOC111491859 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 6.43e-42
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 0 

Query: 1  MASSSNPSLLLHLLLVQRCLFHWIPGVHAALSSCFHRLQDEMFDQSFESILSEKLLISAI 60
          MASSSNPS LLHLLLVQRCLFHWIPGVHAALS CFHRLQDEMFDQSFESILSEKLLISAI
Sbjct: 1  MASSSNPSFLLHLLLVQRCLFHWIPGVHAALSPCFHRLQDEMFDQSFESILSEKLLISAI 60

Query: 61 RIYMRQPRLQVG 72
          RIYMRQPRLQVG
Sbjct: 61 RIYMRQPRLQVG 72

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g02010 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG11g02010 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022996691.11.33e-4197.22uncharacterized protein LOC111491859 [Cucurbita maxima][more]
KAG6598450.12.14e-3893.06hypothetical protein SDJN03_08228, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7029391.14.35e-1766.67hypothetical protein SDJN02_07730, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Cp4.1LG11g02010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K5H96.43e-4297.22uncharacterized protein LOC111491859 OS=Cucurbita maxima OX=3661 GN=LOC111491859... [more]
BLAST of Cp4.1LG11g02010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g02010.1Cp4.1LG11g02010.1mRNA