Cp4.1LG11g01360 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g01360
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	WUSCHEL-related homeobox 4-like
Location	Cp4.1LG11: 767274 .. 768145 (+)
RNA-Seq Expression	Cp4.1LG11g01360
Synteny	Cp4.1LG11g01360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATCAAGCATGAAGGTTCATCAGTTCGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTCGGCTGCAAGCGCTTACGCCCTCTTGCCCCTAAGCTTCAACAACATCAACAACAACATCAACAACAACATCAACAACAACATCCCTCCTCCTCCTCCTCCTCCGATCATAACACTACCACCACCACGCTCACCACTTTGGACCTCAAGACCTTCATCCGACCCGATTGTGGCCCCAGAAAACTGGGTTCCTCTCATGACCACAACAAAGGCTCTTCTTCCTCTTCTTCCTCTTCTTCCCCCCAGGTAACAACTAACCGCAACTATTATCTACCTTCTCTTGGGGTTTGGGGTTTGGGGTTTGGGGTTTGTTTAAAACTGAGAAATTACCCCGGGGGTTCAATCAAATTTGTGCAGACGGCAGTGGAGACACATCCCGGGGGGACGAGGTGGAATCCAACCCAAGAACAGATTGGGATATTGGAGATGCTGTACAGCAGAGGAATGAGGACTCCCAATGCCCAACAAATCGAGCACATCACTGCCCAGCTCGGCAACTACGGCAAGATCGAAGGCAAGAACGTGTTCTATTGGTTTCAGAATCACAAAGCCCGTGAGCGACAGAAACAGAAGCGCAACAGCCTGGGTCTTCCCCACTCCCCCAGAACTCCCCCTCCTCCCATCCTCCCCACCTTCCACCCTTCCTTCCCGGTACGCTACAAAATTCAATCCATCATCCCATATATTTCAAATACTCAAAACCCAACATTATATCTAAATAAATATATTTACAATTGCAGGGAGAGGAAGACAGTCCGTACAAGAAGAAGTGCTTGTACTGGGGGTTTGAGTGTTTCGTACAACATAAC

mRNA sequence

ATGGGATCAAGCATGAAGGTTCATCAGTTCGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTCGGCTGCAAGCGCTTACGCCCTCTTGCCCCTAAGCTTCAACAACATCAACAACAACATCAACAACAACATCAACAACAACATCCCTCCTCCTCCTCCTCCTCCGATCATAACACTACCACCACCACGCTCACCACTTTGGACCTCAAGACCTTCATCCGACCCGATTGTGGCCCCAGAAAACTGGGTTCCTCTCATGACCACAACAAAGGCTCTTCTTCCTCTTCTTCCTCTTCTTCCCCCCAGGTAACAACTAACCGCAACTATTATCTACCTTCTCTTGGGGTTTGGGGTTTGGGGTTTGGGGTTTGTTTAAAACTGAGAAATTACCCCGGGGGTTCAATCAAATTTGTGCAGACGGCAGTGGAGACACATCCCGGGGGGACGAGGTGGAATCCAACCCAAGAACAGATTGGGATATTGGAGATGCTGTACAGCAGAGGAATGAGGACTCCCAATGCCCAACAAATCGAGCACATCACTGCCCAGCTCGGCAACTACGGCAAGATCGAAGGCAAGAACGTGTTCTATTGGTTTCAGAATCACAAAGCCCGTGAGCGACAGAAACAGAAGCGCAACAGCCTGGGTCTTCCCCACTCCCCCAGAACTCCCCCTCCTCCCATCCTCCCCACCTTCCACCCTTCCTTCCCGGGAGAGGAAGACAGTCCGTACAAGAAGAAGTGCTTGTACTGGGGGTTTGAGTGTTTCGTACAACATAAC

Coding sequence (CDS)

ATGGGATCAAGCATGAAGGTTCATCAGTTCGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTCGGCTGCAAGCGCTTACGCCCTCTTGCCCCTAAGCTTCAACAACATCAACAACAACATCAACAACAACATCAACAACAACATCCCTCCTCCTCCTCCTCCTCCGATCATAACACTACCACCACCACGCTCACCACTTTGGACCTCAAGACCTTCATCCGACCCGATTGTGGCCCCAGAAAACTGGGTTCCTCTCATGACCACAACAAAGGCTCTTCTTCCTCTTCTTCCTCTTCTTCCCCCCAGGTAACAACTAACCGCAACTATTATCTACCTTCTCTTGGGGTTTGGGGTTTGGGGTTTGGGGTTTGTTTAAAACTGAGAAATTACCCCGGGGGTTCAATCAAATTTGTGCAGACGGCAGTGGAGACACATCCCGGGGGGACGAGGTGGAATCCAACCCAAGAACAGATTGGGATATTGGAGATGCTGTACAGCAGAGGAATGAGGACTCCCAATGCCCAACAAATCGAGCACATCACTGCCCAGCTCGGCAACTACGGCAAGATCGAAGGCAAGAACGTGTTCTATTGGTTTCAGAATCACAAAGCCCGTGAGCGACAGAAACAGAAGCGCAACAGCCTGGGTCTTCCCCACTCCCCCAGAACTCCCCCTCCTCCCATCCTCCCCACCTTCCACCCTTCCTTCCCGGGAGAGGAAGACAGTCCGTACAAGAAGAAGTGCTTGTACTGGGGGTTTGAGTGTTTCGTACAACATAAC

Protein sequence

MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHQQQHQQQHQQQHPSSSSSSDHNTTTTTLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQVTTNRNYYLPSLGVWGLGFGVCLKLRNYPGGSIKFVQTAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGEEDSPYKKKCLYWGFECFVQHN

Homology

[Close]

BLAST of Cp4.1LG11g01360 vs. ExPASy Swiss-Prot
Match: Q6X7J9 (WUSCHEL-related homeobox 4 OS=Arabidopsis thaliana OX=3702 GN=WOX4 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.7e-42
Identity = 126/278 (45.32%), Postives = 134/278 (48.20%), Query Frame = 0


Query: 5   MKVHQFARGF---WDE----PSLSLGCKRLRPLAPKLQQHQQQHQQQHQQQHPSSSSSSD 64
           MKVH+F+ GF   WD+     SLSL CKRLRPLAPKL               P SSSS  
Sbjct: 1   MKVHEFSNGFSSSWDQHDSTSSLSLSCKRLRPLAPKL---------SGSPPSPPSSSSG- 60

Query: 65  HNTTTTTLTTLDLKTFIRPD-CGPRKLGSSHDHNKGSSSSSSSSSPQVTTNRNYYLPSLG 124
                 T  T DLK FIRPD  GP K     D                            
Sbjct: 61  -----VTSATFDLKNFIRPDQTGPTKFEHKRD---------------------------- 120

Query: 125 VWGLGFGVCLKLRNYPGGSIKFVQTAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQ 184
                                     +ETHPGGTRWNPTQEQIGILEMLY  GMRTPNAQ
Sbjct: 121 ----------------------PPHQLETHPGGTRWNPTQEQIGILEMLYKGGMRTPNAQ 180

Query: 185 QIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRN---SLGLPHSPRTP----PPPI 244
           QIEHIT QLG YGKIEGKNVFYWFQNHKARERQKQKRN   SL    S  T     P   
Sbjct: 181 QIEHITLQLGKYGKIEGKNVFYWFQNHKARERQKQKRNNLISLSCQSSFTTTGVFNPSVT 213

Query: 245 LPT---------FHPSFPGE---EDSPYKKKCLYWGFE 256
           + T           P    E   E++ YK+ C  WGFE
Sbjct: 241 MKTRTSSSLDIMREPMVEKEELVEENEYKRTCRSWGFE 213

[Close]

BLAST of Cp4.1LG11g01360 vs. ExPASy Swiss-Prot
Match: Q25AM2 (WUSCHEL-related homeobox 4 OS=Oryza sativa subsp. indica OX=39946 GN=WOX4 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.4e-24
Identity = 64/116 (55.17%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 148 GGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARE 207
           G TRWNP+ EQI +LEMLY  GMRTPN+ QIE IT +LG YG+IEGKNVFYWFQNHKARE
Sbjct: 89  GTTRWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARE 148

Query: 208 RQKQKRNSLGLPHSPRTPPPPILP-----TFHPSFPGEED-----SPYKKKCLYWG 254
           RQKQKR +L    +  T  P +LP     T       E+D     +  K++C  WG
Sbjct: 149 RQKQKRAAL---LTLSTLDPSLLPATANETKEAPEKKEKDVEDGLASCKRRCKAWG 201

[Close]

BLAST of Cp4.1LG11g01360 vs. ExPASy Swiss-Prot
Match: Q7XTV3 (WUSCHEL-related homeobox 4 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX4 PE=2 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 4.4e-24
Identity = 64/116 (55.17%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 148 GGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARE 207
           G TRWNP+ EQI +LEMLY  GMRTPN+ QIE IT +LG YG+IEGKNVFYWFQNHKARE
Sbjct: 89  GTTRWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARE 148

Query: 208 RQKQKRNSLGLPHSPRTPPPPILP-----TFHPSFPGEED-----SPYKKKCLYWG 254
           RQKQKR +L    +  T  P +LP     T       E+D     +  K++C  WG
Sbjct: 149 RQKQKRAAL---LTLSTLDPSLLPATANETKEAPEKKEKDVEDGLASCKRRCKAWG 201

[Close]

BLAST of Cp4.1LG11g01360 vs. ExPASy Swiss-Prot
Match: A2WWU7 (WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. indica OX=39946 GN=WOX5 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.5e-21
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 151 RWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQK 210
           RW PT+EQI +LE LY +G+RTP A+QI+ ITA+L  +G IEGKNVFYWFQNHKAR+RQK
Sbjct: 44  RWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQK 103

Query: 211 QKRNSLGLPHSPRTPPPPILPTFH 235
           QK+ S          PPP LP  H
Sbjct: 104 QKQQSFDYFSKLFRRPPP-LPVLH 126

[Close]

BLAST of Cp4.1LG11g01360 vs. ExPASy Swiss-Prot
Match: Q8LR86 (WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX5 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.5e-21
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 151 RWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQK 210
           RW PT+EQI +LE LY +G+RTP A+QI+ ITA+L  +G IEGKNVFYWFQNHKAR+RQK
Sbjct: 44  RWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQK 103

Query: 211 QKRNSLGLPHSPRTPPPPILPTFH 235
           QK+ S          PPP LP  H
Sbjct: 104 QKQQSFDYFSKLFRRPPP-LPVLH 126

[Close]

BLAST of Cp4.1LG11g01360 vs. NCBI nr
Match: XP_023545717.1 (WUSCHEL-related homeobox 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 443 bits (1140), Expect = 8.35e-156
Identity = 224/261 (85.82%), Postives = 224/261 (85.82%), Query Frame = 0


Query: 1   MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHQQQHQQQHQQQHPSSSSSSDHNT 60
           MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHQQQHQQQHQQQHPSSSSSSDHNT
Sbjct: 6   MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHQQQHQQQHQQQHPSSSSSSDHNT 65

Query: 61  TTTTLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQVTTNRNYYLPSLGVWGL 120
           TTTTLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQ                 
Sbjct: 66  TTTTLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQ----------------- 125

Query: 121 GFGVCLKLRNYPGGSIKFVQTAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEH 180
                               TAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEH
Sbjct: 126 --------------------TAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEH 185

Query: 181 ITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGE 240
           ITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGE
Sbjct: 186 ITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGE 229

Query: 241 EDSPYKKKCLYWGFECFVQHN 261
           EDSPYKKKCLYWGFECFVQHN
Sbjct: 246 EDSPYKKKCLYWGFECFVQHN 229

[Close]

BLAST of Cp4.1LG11g01360 vs. NCBI nr
Match: XP_022997565.1 (WUSCHEL-related homeobox 4-like [Cucurbita maxima])

HSP 1 Score: 414 bits (1065), Expect = 2.00e-144
Identity = 214/261 (81.99%), Postives = 215/261 (82.38%), Query Frame = 0


Query: 1   MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHQQQHQQQHQQQHPSSSSSSDHNT 60
           MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ QQ H  Q QQQHPSSSS  DHNT
Sbjct: 6   MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQQQQHHHHQQQQQHPSSSS--DHNT 65

Query: 61  TTTTLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQVTTNRNYYLPSLGVWGL 120
           TTT LTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQ                 
Sbjct: 66  TTT-LTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQ----------------- 125

Query: 121 GFGVCLKLRNYPGGSIKFVQTAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEH 180
                               TAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEH
Sbjct: 126 --------------------TAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEH 185

Query: 181 ITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGE 240
           ITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGE
Sbjct: 186 ITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGE 226

Query: 241 EDSPYKKKCLYWGFECFVQHN 261
           EDSPYKKKCLYWGFEC V+HN
Sbjct: 246 EDSPYKKKCLYWGFECLVEHN 226

[Close]

BLAST of Cp4.1LG11g01360 vs. NCBI nr
Match: XP_022962376.1 (WUSCHEL-related homeobox 4-like [Cucurbita moschata])

HSP 1 Score: 413 bits (1062), Expect = 4.30e-144
Identity = 213/261 (81.61%), Postives = 214/261 (81.99%), Query Frame = 0


Query: 1   MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHQQQHQQQHQQQHPSSSSSSDHNT 60
           MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ      QQHQQQ   SSSSSDHNT
Sbjct: 1   MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ------QQHQQQRHPSSSSSDHNT 60

Query: 61  TTTTLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQVTTNRNYYLPSLGVWGL 120
           TTTTLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQ                 
Sbjct: 61  TTTTLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQ----------------- 120

Query: 121 GFGVCLKLRNYPGGSIKFVQTAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEH 180
                               TAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEH
Sbjct: 121 --------------------TAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEH 180

Query: 181 ITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGE 240
           ITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGE
Sbjct: 181 ITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGE 218

Query: 241 EDSPYKKKCLYWGFECFVQHN 261
           EDSPYKKKCLYWGFEC V+HN
Sbjct: 241 EDSPYKKKCLYWGFECLVEHN 218

[Close]

BLAST of Cp4.1LG11g01360 vs. NCBI nr
Match: KAG6598358.1 (WUSCHEL-related homeobox 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 406 bits (1044), Expect = 2.21e-141
Identity = 211/262 (80.53%), Postives = 213/262 (81.30%), Query Frame = 0


Query: 1   MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHQQQHQQQHQQQHPSSSSSSDHNT 60
           MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ         QQ+HPSSSSSSDHNT
Sbjct: 1   MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ---------QQRHPSSSSSSDHNT 60

Query: 61  TTTT-LTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQVTTNRNYYLPSLGVWG 120
           TTTT LTTLDLKTFIRPDCGPRKLGSSHDH KGSSSSSSSSSPQ                
Sbjct: 61  TTTTTLTTLDLKTFIRPDCGPRKLGSSHDHKKGSSSSSSSSSPQ---------------- 120

Query: 121 LGFGVCLKLRNYPGGSIKFVQTAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIE 180
                                TAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIE
Sbjct: 121 ---------------------TAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIE 180

Query: 181 HITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPG 240
           HITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPG
Sbjct: 181 HITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPG 216

Query: 241 EEDSPYKKKCLYWGFECFVQHN 261
           EEDSPYKKKCLYWGFEC V+HN
Sbjct: 241 EEDSPYKKKCLYWGFECLVEHN 216

[Close]

BLAST of Cp4.1LG11g01360 vs. NCBI nr
Match: KAG7029329.1 (WUSCHEL-related homeobox 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 404 bits (1038), Expect = 1.75e-140
Identity = 208/261 (79.69%), Postives = 211/261 (80.84%), Query Frame = 0


Query: 1   MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHQQQHQQQHQQQHPSSSSSSDHNT 60
           MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ         QQ+HPSSSSS  + T
Sbjct: 1   MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ---------QQRHPSSSSSDHNTT 60

Query: 61  TTTTLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQVTTNRNYYLPSLGVWGL 120
           TTTTLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQ                 
Sbjct: 61  TTTTLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQ----------------- 120

Query: 121 GFGVCLKLRNYPGGSIKFVQTAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEH 180
                               TAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEH
Sbjct: 121 --------------------TAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEH 180

Query: 181 ITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGE 240
           ITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGE
Sbjct: 181 ITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGE 215

Query: 241 EDSPYKKKCLYWGFECFVQHN 261
           EDSPYKKKCLYWGFEC V+HN
Sbjct: 241 EDSPYKKKCLYWGFECLVEHN 215

[Close]

BLAST of Cp4.1LG11g01360 vs. ExPASy TrEMBL
Match: A0A6J1KA18 (WUSCHEL-related homeobox 4-like OS=Cucurbita maxima OX=3661 GN=LOC111492455 PE=4 SV=1)

HSP 1 Score: 414 bits (1065), Expect = 9.68e-145
Identity = 214/261 (81.99%), Postives = 215/261 (82.38%), Query Frame = 0


Query: 1   MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHQQQHQQQHQQQHPSSSSSSDHNT 60
           MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ QQ H  Q QQQHPSSSS  DHNT
Sbjct: 6   MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQQQQHHHHQQQQQHPSSSS--DHNT 65

Query: 61  TTTTLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQVTTNRNYYLPSLGVWGL 120
           TTT LTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQ                 
Sbjct: 66  TTT-LTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQ----------------- 125

Query: 121 GFGVCLKLRNYPGGSIKFVQTAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEH 180
                               TAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEH
Sbjct: 126 --------------------TAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEH 185

Query: 181 ITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGE 240
           ITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGE
Sbjct: 186 ITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGE 226

Query: 241 EDSPYKKKCLYWGFECFVQHN 261
           EDSPYKKKCLYWGFEC V+HN
Sbjct: 246 EDSPYKKKCLYWGFECLVEHN 226

[Close]

BLAST of Cp4.1LG11g01360 vs. ExPASy TrEMBL
Match: A0A6J1HCY5 (WUSCHEL-related homeobox 4-like OS=Cucurbita moschata OX=3662 GN=LOC111462837 PE=4 SV=1)

HSP 1 Score: 413 bits (1062), Expect = 2.08e-144
Identity = 213/261 (81.61%), Postives = 214/261 (81.99%), Query Frame = 0


Query: 1   MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHQQQHQQQHQQQHPSSSSSSDHNT 60
           MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ      QQHQQQ   SSSSSDHNT
Sbjct: 1   MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ------QQHQQQRHPSSSSSDHNT 60

Query: 61  TTTTLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQVTTNRNYYLPSLGVWGL 120
           TTTTLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQ                 
Sbjct: 61  TTTTLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQ----------------- 120

Query: 121 GFGVCLKLRNYPGGSIKFVQTAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEH 180
                               TAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEH
Sbjct: 121 --------------------TAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEH 180

Query: 181 ITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGE 240
           ITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGE
Sbjct: 181 ITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGE 218

Query: 241 EDSPYKKKCLYWGFECFVQHN 261
           EDSPYKKKCLYWGFEC V+HN
Sbjct: 241 EDSPYKKKCLYWGFECLVEHN 218

[Close]

BLAST of Cp4.1LG11g01360 vs. ExPASy TrEMBL
Match: A0A0A0LNZ2 (Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G356610 PE=4 SV=1)

HSP 1 Score: 337 bits (865), Expect = 1.25e-114
Identity = 180/259 (69.50%), Postives = 191/259 (73.75%), Query Frame = 0


Query: 4   SMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHQQQHQQQHQQQHPSSSSSSDHNTTTT 63
           +MKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ             P+S +++   TTTT
Sbjct: 4   NMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ-------------PTSDNTT---TTTT 63

Query: 64  TLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQVTTNRNYYLPSLGVWGLGFG 123
           TLTT DLKTFI+PDCGPRK GSSHDH+K SSSSSSS                        
Sbjct: 64  TLTTFDLKTFIKPDCGPRKPGSSHDHSKDSSSSSSS------------------------ 123

Query: 124 VCLKLRNYPGGSIKFVQTAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITA 183
                          +QT VETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITA
Sbjct: 124 ---------------LQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITA 183

Query: 184 QLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPP-ILPTFHPSFPGEED 243
           QLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPP I+P FH    GEED
Sbjct: 184 QLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPAFHT---GEED 204

Query: 244 SPYKKKCLYWGFECFVQHN 261
           SPYK+KCLYWGFEC V+ N
Sbjct: 244 SPYKRKCLYWGFECLVEDN 204

[Close]

BLAST of Cp4.1LG11g01360 vs. ExPASy TrEMBL
Match: A0A5A7V042 (WUSCHEL-related homeobox 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00510 PE=4 SV=1)

HSP 1 Score: 336 bits (861), Expect = 4.41e-114
Identity = 179/258 (69.38%), Postives = 190/258 (73.64%), Query Frame = 0


Query: 5   MKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHQQQHQQQHQQQHPSSSSSSDHNTTTTT 64
           MKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ             P+S +++   TTTTT
Sbjct: 1   MKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ-------------PTSDNTT---TTTTT 60

Query: 65  LTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQVTTNRNYYLPSLGVWGLGFGV 124
           LTT DLKTFI+PDCGPRK GSSHDH+K SSSSSSS                         
Sbjct: 61  LTTFDLKTFIKPDCGPRKPGSSHDHSKDSSSSSSS------------------------- 120

Query: 125 CLKLRNYPGGSIKFVQTAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQ 184
                         +QT VETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQ
Sbjct: 121 --------------LQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQ 180

Query: 185 LGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPP-ILPTFHPSFPGEEDS 244
           LGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPP I+P FH    G+EDS
Sbjct: 181 LGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPAFHT---GDEDS 200

Query: 245 PYKKKCLYWGFECFVQHN 261
           PYK+KCLYWGFEC V+ N
Sbjct: 241 PYKRKCLYWGFECLVEDN 200

[Close]

BLAST of Cp4.1LG11g01360 vs. ExPASy TrEMBL
Match: A0A1S3BBG0 (WUSCHEL-related homeobox 4 OS=Cucumis melo OX=3656 GN=LOC103487871 PE=4 SV=1)

HSP 1 Score: 336 bits (861), Expect = 5.43e-114
Identity = 179/259 (69.11%), Postives = 191/259 (73.75%), Query Frame = 0


Query: 4   SMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHQQQHQQQHQQQHPSSSSSSDHNTTTT 63
           +MKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ             P+S +++   TTTT
Sbjct: 4   NMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ-------------PTSDNTTT-TTTTT 63

Query: 64  TLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQVTTNRNYYLPSLGVWGLGFG 123
           TLTT DLKTFI+PDCGPRK GSSHDH+K SSSSSSS                        
Sbjct: 64  TLTTFDLKTFIKPDCGPRKPGSSHDHSKDSSSSSSS------------------------ 123

Query: 124 VCLKLRNYPGGSIKFVQTAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITA 183
                          +QT VETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITA
Sbjct: 124 ---------------LQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITA 183

Query: 184 QLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPP-ILPTFHPSFPGEED 243
           QLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPP I+P FH    G+ED
Sbjct: 184 QLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPAFHT---GDED 206

Query: 244 SPYKKKCLYWGFECFVQHN 261
           SPYK+KCLYWGFEC V+ N
Sbjct: 244 SPYKRKCLYWGFECLVEDN 206

[Close]

BLAST of Cp4.1LG11g01360 vs. TAIR 10
Match: AT1G46480.1 (WUSCHEL related homeobox 4 )

HSP 1 Score: 173.7 bits (439), Expect = 1.9e-43
Identity = 126/278 (45.32%), Postives = 134/278 (48.20%), Query Frame = 0


Query: 5   MKVHQFARGF---WDE----PSLSLGCKRLRPLAPKLQQHQQQHQQQHQQQHPSSSSSSD 64
           MKVH+F+ GF   WD+     SLSL CKRLRPLAPKL               P SSSS  
Sbjct: 1   MKVHEFSNGFSSSWDQHDSTSSLSLSCKRLRPLAPKL---------SGSPPSPPSSSSG- 60

Query: 65  HNTTTTTLTTLDLKTFIRPD-CGPRKLGSSHDHNKGSSSSSSSSSPQVTTNRNYYLPSLG 124
                 T  T DLK FIRPD  GP K     D                            
Sbjct: 61  -----VTSATFDLKNFIRPDQTGPTKFEHKRD---------------------------- 120

Query: 125 VWGLGFGVCLKLRNYPGGSIKFVQTAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQ 184
                                     +ETHPGGTRWNPTQEQIGILEMLY  GMRTPNAQ
Sbjct: 121 ----------------------PPHQLETHPGGTRWNPTQEQIGILEMLYKGGMRTPNAQ 180

Query: 185 QIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRN---SLGLPHSPRTP----PPPI 244
           QIEHIT QLG YGKIEGKNVFYWFQNHKARERQKQKRN   SL    S  T     P   
Sbjct: 181 QIEHITLQLGKYGKIEGKNVFYWFQNHKARERQKQKRNNLISLSCQSSFTTTGVFNPSVT 213

Query: 245 LPT---------FHPSFPGE---EDSPYKKKCLYWGFE 256
           + T           P    E   E++ YK+ C  WGFE
Sbjct: 241 MKTRTSSSLDIMREPMVEKEELVEENEYKRTCRSWGFE 213

[Close]

BLAST of Cp4.1LG11g01360 vs. TAIR 10
Match: AT3G18010.1 (WUSCHEL related homeobox 1 )

HSP 1 Score: 101.7 bits (252), Expect = 9.3e-22
Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 150 TRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQ 209
           +RWNPT +Q+ +LE LY +G RTP+A  I+ ITAQL  YGKIEGKNVFYWFQNHKARERQ
Sbjct: 75  SRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQ 134

Query: 210 KQKR 214
           K++R
Sbjct: 135 KRRR 138

[Close]

BLAST of Cp4.1LG11g01360 vs. TAIR 10
Match: AT5G59340.1 (WUSCHEL related homeobox 2 )

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-21
Identity = 44/67 (65.67%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 150 TRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQ 209
           +RWNPT++QI +LE LY  G+RTP+A QI+ IT +L  YG IEGKNVFYWFQNHKAR+RQ
Sbjct: 13  SRWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHKARQRQ 72

Query: 210 KQKRNSL 217
           KQK+  +
Sbjct: 73  KQKQERM 79

[Close]

BLAST of Cp4.1LG11g01360 vs. TAIR 10
Match: AT2G28610.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 96.3 bits (238), Expect = 3.9e-20
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 150 TRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQ 209
           TRW PT EQ+ ILE +Y  G+RTPNA QI+ ITA L  YG+IEGKNVFYWFQNHKAR+RQ
Sbjct: 7   TRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQ 66

Query: 210 KQKR 214
           K ++
Sbjct: 67  KLRK 70

[Close]

BLAST of Cp4.1LG11g01360 vs. TAIR 10
Match: AT2G01500.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-19
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 151 RWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQK 210
           RWNPT EQI  LE LY  G RTP  +QI+ I ++L  YG+IEGKNVFYWFQNHKARER K
Sbjct: 61  RWNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKYGRIEGKNVFYWFQNHKARERLK 120

Query: 211 QKRNSLG 218
           ++R   G
Sbjct: 121 RRRREGG 127

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g01360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6X7J9	2.7e-42	45.32	WUSCHEL-related homeobox 4 OS=Arabidopsis thaliana OX=3702 GN=WOX4 PE=1 SV=1	[more]
Q25AM2	4.4e-24	55.17	WUSCHEL-related homeobox 4 OS=Oryza sativa subsp. indica OX=39946 GN=WOX4 PE=3 S...	[more]
Q7XTV3	4.4e-24	55.17	WUSCHEL-related homeobox 4 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX4 PE=2...	[more]
A2WWU7	4.5e-21	60.71	WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. indica OX=39946 GN=WOX5 PE=3 S...	[more]
Q8LR86	4.5e-21	60.71	WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX5 PE=2...	[more]

BLAST of Cp4.1LG11g01360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545717.1	8.35e-156	85.82	WUSCHEL-related homeobox 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022997565.1	2.00e-144	81.99	WUSCHEL-related homeobox 4-like [Cucurbita maxima]	[more]
XP_022962376.1	4.30e-144	81.61	WUSCHEL-related homeobox 4-like [Cucurbita moschata]	[more]
KAG6598358.1	2.21e-141	80.53	WUSCHEL-related homeobox 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7029329.1	1.75e-140	79.69	WUSCHEL-related homeobox 4 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Cp4.1LG11g01360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KA18	9.68e-145	81.99	WUSCHEL-related homeobox 4-like OS=Cucurbita maxima OX=3661 GN=LOC111492455 PE=4...	[more]
A0A6J1HCY5	2.08e-144	81.61	WUSCHEL-related homeobox 4-like OS=Cucurbita moschata OX=3662 GN=LOC111462837 PE...	[more]
A0A0A0LNZ2	1.25e-114	69.50	Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G356610 PE...	[more]
A0A5A7V042	4.41e-114	69.38	WUSCHEL-related homeobox 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A1S3BBG0	5.43e-114	69.11	WUSCHEL-related homeobox 4 OS=Cucumis melo OX=3656 GN=LOC103487871 PE=4 SV=1	[more]

BLAST of Cp4.1LG11g01360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G46480.1	1.9e-43	45.32	WUSCHEL related homeobox 4	[more]
AT3G18010.1	9.3e-22	70.31	WUSCHEL related homeobox 1	[more]
AT5G59340.1	2.7e-21	65.67	WUSCHEL related homeobox 2	[more]
AT2G28610.1	3.9e-20	68.75	Homeodomain-like superfamily protein	[more]
AT2G01500.1	1.1e-19	64.18	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 147..214 e-value: 1.0E-7 score: 41.6
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 150..209 e-value: 1.2E-18 score: 66.7
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 145..210 score: 10.187267
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 150..211 e-value: 9.20804E-7 score: 43.0009
None	No IPR available	GENE3D	1.10.10.60		coord: 149..216 e-value: 8.7E-10 score: 40.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 220..234
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 209..237
IPR044186	WUSCHEL-related homeobox 4	PANTHER	PTHR47716	WUSCHEL-RELATED HOMEOBOX 4	coord: 5..96 coord: 141..259
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 146..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g01360.1	Cp4.1LG11g01360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0010087	phloem or xylem histogenesis
biological_process	GO:0010067	procambium histogenesis
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity