Cp4.1LG11g01250 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g01250
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	F-box protein GID2-like
Location	Cp4.1LG11: 733110 .. 733529 (+)
RNA-Seq Expression	Cp4.1LG11g01250
Synteny	Cp4.1LG11g01250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAATCAAATCAGTTTCACAGGAACAACAATCCCCACCACCCTCCTCCTCCTCTGCCTTTGCGAATTTAGACGACAATCTCTTGTTCGAGGTGTTTAAGCACGTCGACGCAAGGACACTCGCCACGGCGGCCGGCGTCAGCAAGCAGTGGTACAAAACCGCCCACGACGAGTGGCTCTGGGAGCTGCTCTGCACCAAACACTGGGCTAACATCGGCTGTGCTAACCAACAGCTACGCTCCGTCGTGCTTGCGCTTGGTGGCTTCCGTCGATTGCACTCTCTTTACCCATTTCCCCCTGTCATAGGATCCGCATCCTGTATTCCCTGGGGCAAAGACGAGGTTCATCTCTCCCTCTCTCTTCTCTCAATTCGGTACTACGAGAAGATGAAGTTCAAAAACAGACCCACTTCTTGA

mRNA sequence

ATGAAGAAAATCAAATCAGTTTCACAGGAACAACAATCCCCACCACCCTCCTCCTCCTCTGCCTTTGCGAATTTAGACGACAATCTCTTGTTCGAGGTGTTTAAGCACGTCGACGCAAGGACACTCGCCACGGCGGCCGGCGTCAGCAAGCAGTGGTACAAAACCGCCCACGACGAGTGGCTCTGGGAGCTGCTCTGCACCAAACACTGGGCTAACATCGGCTGTGCTAACCAACAGCTACGCTCCGTCGTGCTTGCGCTTGGTGGCTTCCGTCGATTGCACTCTCTTTACCCATTTCCCCCTGTCATAGGATCCGCATCCTGTATTCCCTGGGGCAAAGACGAGGTTCATCTCTCCCTCTCTCTTCTCTCAATTCGGTACTACGAGAAGATGAAGTTCAAAAACAGACCCACTTCTTGA

Coding sequence (CDS)

ATGAAGAAAATCAAATCAGTTTCACAGGAACAACAATCCCCACCACCCTCCTCCTCCTCTGCCTTTGCGAATTTAGACGACAATCTCTTGTTCGAGGTGTTTAAGCACGTCGACGCAAGGACACTCGCCACGGCGGCCGGCGTCAGCAAGCAGTGGTACAAAACCGCCCACGACGAGTGGCTCTGGGAGCTGCTCTGCACCAAACACTGGGCTAACATCGGCTGTGCTAACCAACAGCTACGCTCCGTCGTGCTTGCGCTTGGTGGCTTCCGTCGATTGCACTCTCTTTACCCATTTCCCCCTGTCATAGGATCCGCATCCTGTATTCCCTGGGGCAAAGACGAGGTTCATCTCTCCCTCTCTCTTCTCTCAATTCGGTACTACGAGAAGATGAAGTTCAAAAACAGACCCACTTCTTGA

Protein sequence

MKKIKSVSQEQQSPPPSSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPVIGSASCIPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

Homology

[Close]

BLAST of Cp4.1LG11g01250 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 5.7e-39
Identity = 82/136 (60.29%), Postives = 100/136 (73.53%), Query Frame = 0


Query: 2   KKIKSVSQEQQSPPPSSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWL 61
           KK+KS  +E+          F+NLD+NL++EV KHVDA+TLA ++ VSK W+KTA DE L
Sbjct: 20  KKMKSTEEEE--------IGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERL 79

Query: 62  WELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPVIGSASCIPWGKDEVHLSLS 121
           WEL+CT+HW NIGC   QLRSVVLALGGFRRLHSLY + P+        +GKDE+ L+LS
Sbjct: 80  WELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLW-PLSKPNPRARFGKDELKLTLS 139

Query: 122 LLSIRYYEKMKFKNRP 138
           LLSIRYYEKM F  RP
Sbjct: 140 LLSIRYYEKMSFTKRP 146

[Close]

BLAST of Cp4.1LG11g01250 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.4e-23
Identity = 58/138 (42.03%), Postives = 83/138 (60.14%), Query Frame = 0


Query: 9   QEQQSPPPSSSS-----AFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWE 68
           Q+Q+  PP  +         +L ++L+FEV +  +ARTLA AA VS+ W + A DE LWE
Sbjct: 55  QQQEEQPPEDAGEGEQPRVPDLGEDLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWE 114

Query: 69  LLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPVIGSASC----------IPWGK 128
             C + WAN+G + +QLR+VVL+LGGFRRLH++Y  P     A            +  G+
Sbjct: 115 AACVREWANLGFSERQLRAVVLSLGGFRRLHAVYIRPLQWRGAGVPRQQGRRQPPVRLGR 174

Query: 129 DEVHLSLSLLSIRYYEKM 132
           D+V LSLSL SI +++ M
Sbjct: 175 DQVQLSLSLFSIGFFQNM 192

[Close]

BLAST of Cp4.1LG11g01250 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.8e-11
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 28  NLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLAL 87
           ++L E+ + +D  +L +AA V + W   A ++ +WE LC +  +     +  LRSVV AL
Sbjct: 33  DVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVS--PRPSLSLRSVVSAL 92

Query: 88  GGFRRLHSLYPFPPVIGSASCIPWGKDEVHLSLSLLSIRYYEKM 132
           GG+R L+ L    PV+     + W +D++ LSLSL  + YYE++
Sbjct: 93  GGYRCLYFLC-IRPVLARLPKLLWTRDQLQLSLSLYCVHYYERL 133

[Close]

BLAST of Cp4.1LG11g01250 vs. NCBI nr
Match: XP_023522812.1 (F-box protein GID2-like [Cucurbita pepo subsp. pepo] >XP_023547045.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 289 bits (739), Expect = 1.49e-98
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MKKIKSVSQEQQSPPPSSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEW 60
           MKKIKSVSQEQQSPPPSSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEW
Sbjct: 1   MKKIKSVSQEQQSPPPSSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEW 60

Query: 61  LWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPVIGSASCIPWGKDEVHLSL 120
           LWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPVIGSASCIPWGKDEVHLSL
Sbjct: 61  LWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPVIGSASCIPWGKDEVHLSL 120

Query: 121 SLLSIRYYEKMKFKNRPTS 139
           SLLSIRYYEKMKFKNRPTS
Sbjct: 121 SLLSIRYYEKMKFKNRPTS 139

[Close]

BLAST of Cp4.1LG11g01250 vs. NCBI nr
Match: KAG6598351.1 (F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029322.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280 bits (716), Expect = 4.66e-95
Identity = 135/139 (97.12%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MKKIKSVSQEQQSPPPSSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEW 60
           MKKIKSVS+EQQSPPPSSS AFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEW
Sbjct: 1   MKKIKSVSEEQQSPPPSSS-AFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEW 60

Query: 61  LWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPVIGSASCIPWGKDEVHLSL 120
           LWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPP+IGSASCIPWGKDE+HLSL
Sbjct: 61  LWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHLSL 120

Query: 121 SLLSIRYYEKMKFKNRPTS 139
           SLLSIRYYEKMKFKNRPTS
Sbjct: 121 SLLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of Cp4.1LG11g01250 vs. NCBI nr
Match: XP_022962352.1 (F-box protein GID2-like [Cucurbita moschata])

HSP 1 Score: 275 bits (704), Expect = 3.15e-93
Identity = 133/139 (95.68%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MKKIKSVSQEQQSPPPSSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEW 60
           MKKIKSVS+EQQSPPPSSS AFANLDDNLLFEVFKHVDARTLATAAGVSKQW KTAHDEW
Sbjct: 1   MKKIKSVSEEQQSPPPSSS-AFANLDDNLLFEVFKHVDARTLATAAGVSKQWCKTAHDEW 60

Query: 61  LWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPVIGSASCIPWGKDEVHLSL 120
           LWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPP++GSASCIPWGKDE+HLSL
Sbjct: 61  LWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIMGSASCIPWGKDELHLSL 120

Query: 121 SLLSIRYYEKMKFKNRPTS 139
           SLLSIRYYEKMKFKNRPTS
Sbjct: 121 SLLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of Cp4.1LG11g01250 vs. NCBI nr
Match: XP_022996700.1 (F-box protein GID2-like [Cucurbita maxima])

HSP 1 Score: 273 bits (698), Expect = 2.59e-92
Identity = 133/139 (95.68%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MKKIKSVSQEQQSPPPSSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEW 60
           MKKIKSVSQEQQSPPPSSS AFANLDDNLLFEVFKHVDARTLATA+GVSKQWYKTAHDEW
Sbjct: 1   MKKIKSVSQEQQSPPPSSS-AFANLDDNLLFEVFKHVDARTLATASGVSKQWYKTAHDEW 60

Query: 61  LWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPVIGSASCIPWGKDEVHLSL 120
           LWELLCTKHWANIGCAN QLRSVVLALGGFRRLHSLYPFPP+IGSASCI WGK EVHLSL
Sbjct: 61  LWELLCTKHWANIGCANPQLRSVVLALGGFRRLHSLYPFPPIIGSASCIAWGKGEVHLSL 120

Query: 121 SLLSIRYYEKMKFKNRPTS 139
           SLLSIRYYEKMKFKNRPTS
Sbjct: 121 SLLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of Cp4.1LG11g01250 vs. NCBI nr
Match: XP_008445558.1 (PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0060929.1 F-box protein GID2-like [Cucumis melo var. makuwa])

HSP 1 Score: 233 bits (595), Expect = 1.56e-76
Identity = 116/141 (82.27%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 1   MKKIKSVSQEQQSPPPSSS--SAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHD 60
           +KK KS S +Q+ P  S    S FANLDDNLLFEVFKHVDARTLATAAGV+KQW+KTAHD
Sbjct: 5   IKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHD 64

Query: 61  EWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPVIGSASCIPWGKDEVHL 120
           E LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPFPP+IG     PWGKDEVHL
Sbjct: 65  ERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNH--PWGKDEVHL 124

Query: 121 SLSLLSIRYYEKMKFKNRPTS 139
           SLSLLSIRYYEKMKFKNRPTS
Sbjct: 125 SLSLLSIRYYEKMKFKNRPTS 143

[Close]

BLAST of Cp4.1LG11g01250 vs. ExPASy TrEMBL
Match: A0A6J1HCI1 (F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111462823 PE=4 SV=1)

HSP 1 Score: 275 bits (704), Expect = 1.53e-93
Identity = 133/139 (95.68%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MKKIKSVSQEQQSPPPSSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEW 60
           MKKIKSVS+EQQSPPPSSS AFANLDDNLLFEVFKHVDARTLATAAGVSKQW KTAHDEW
Sbjct: 1   MKKIKSVSEEQQSPPPSSS-AFANLDDNLLFEVFKHVDARTLATAAGVSKQWCKTAHDEW 60

Query: 61  LWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPVIGSASCIPWGKDEVHLSL 120
           LWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPP++GSASCIPWGKDE+HLSL
Sbjct: 61  LWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIMGSASCIPWGKDELHLSL 120

Query: 121 SLLSIRYYEKMKFKNRPTS 139
           SLLSIRYYEKMKFKNRPTS
Sbjct: 121 SLLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of Cp4.1LG11g01250 vs. ExPASy TrEMBL
Match: A0A6J1K7I7 (F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111491869 PE=4 SV=1)

HSP 1 Score: 273 bits (698), Expect = 1.25e-92
Identity = 133/139 (95.68%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MKKIKSVSQEQQSPPPSSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEW 60
           MKKIKSVSQEQQSPPPSSS AFANLDDNLLFEVFKHVDARTLATA+GVSKQWYKTAHDEW
Sbjct: 1   MKKIKSVSQEQQSPPPSSS-AFANLDDNLLFEVFKHVDARTLATASGVSKQWYKTAHDEW 60

Query: 61  LWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPVIGSASCIPWGKDEVHLSL 120
           LWELLCTKHWANIGCAN QLRSVVLALGGFRRLHSLYPFPP+IGSASCI WGK EVHLSL
Sbjct: 61  LWELLCTKHWANIGCANPQLRSVVLALGGFRRLHSLYPFPPIIGSASCIAWGKGEVHLSL 120

Query: 121 SLLSIRYYEKMKFKNRPTS 139
           SLLSIRYYEKMKFKNRPTS
Sbjct: 121 SLLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of Cp4.1LG11g01250 vs. ExPASy TrEMBL
Match: A0A5A7V5E1 (F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00620 PE=4 SV=1)

HSP 1 Score: 233 bits (595), Expect = 7.54e-77
Identity = 116/141 (82.27%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 1   MKKIKSVSQEQQSPPPSSS--SAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHD 60
           +KK KS S +Q+ P  S    S FANLDDNLLFEVFKHVDARTLATAAGV+KQW+KTAHD
Sbjct: 5   IKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHD 64

Query: 61  EWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPVIGSASCIPWGKDEVHL 120
           E LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPFPP+IG     PWGKDEVHL
Sbjct: 65  ERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNH--PWGKDEVHL 124

Query: 121 SLSLLSIRYYEKMKFKNRPTS 139
           SLSLLSIRYYEKMKFKNRPTS
Sbjct: 125 SLSLLSIRYYEKMKFKNRPTS 143

[Close]

BLAST of Cp4.1LG11g01250 vs. ExPASy TrEMBL
Match: A0A1S3BDV6 (F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103488538 PE=4 SV=1)

HSP 1 Score: 233 bits (595), Expect = 7.54e-77
Identity = 116/141 (82.27%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 1   MKKIKSVSQEQQSPPPSSS--SAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHD 60
           +KK KS S +Q+ P  S    S FANLDDNLLFEVFKHVDARTLATAAGV+KQW+KTAHD
Sbjct: 5   IKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHD 64

Query: 61  EWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPVIGSASCIPWGKDEVHL 120
           E LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPFPP+IG     PWGKDEVHL
Sbjct: 65  ERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNH--PWGKDEVHL 124

Query: 121 SLSLLSIRYYEKMKFKNRPTS 139
           SLSLLSIRYYEKMKFKNRPTS
Sbjct: 125 SLSLLSIRYYEKMKFKNRPTS 143

[Close]

BLAST of Cp4.1LG11g01250 vs. ExPASy TrEMBL
Match: A0A0A0LR75 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G355020 PE=4 SV=1)

HSP 1 Score: 232 bits (591), Expect = 2.97e-76
Identity = 117/143 (81.82%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MKKIKSVSQEQQ----SPPPSSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTA 60
           +KK KSVS +Q+     P PS+   FANLDDNLLFEVFKHVDARTLAT AGVSKQW+KTA
Sbjct: 5   IKKFKSVSNQQEPDHSQPQPST---FANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTA 64

Query: 61  HDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPVIGSASCIPWGKDEV 120
           HDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPFPP+IG     PWGKDEV
Sbjct: 65  HDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNH--PWGKDEV 124

Query: 121 HLSLSLLSIRYYEKMKFKNRPTS 139
           HLSLSLLSIRYYEKMKFKNRPTS
Sbjct: 125 HLSLSLLSIRYYEKMKFKNRPTS 142

[Close]

BLAST of Cp4.1LG11g01250 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 161.8 bits (408), Expect = 4.0e-40
Identity = 82/136 (60.29%), Postives = 100/136 (73.53%), Query Frame = 0


Query: 2   KKIKSVSQEQQSPPPSSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWL 61
           KK+KS  +E+          F+NLD+NL++EV KHVDA+TLA ++ VSK W+KTA DE L
Sbjct: 20  KKMKSTEEEE--------IGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERL 79

Query: 62  WELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPVIGSASCIPWGKDEVHLSLS 121
           WEL+CT+HW NIGC   QLRSVVLALGGFRRLHSLY + P+        +GKDE+ L+LS
Sbjct: 80  WELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLW-PLSKPNPRARFGKDELKLTLS 139

Query: 122 LLSIRYYEKMKFKNRP 138
           LLSIRYYEKM F  RP
Sbjct: 140 LLSIRYYEKMSFTKRP 146

[Close]

BLAST of Cp4.1LG11g01250 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 69.3 bits (168), Expect = 2.7e-12
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 28  NLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLAL 87
           ++L E+ + +D  +L +AA V + W   A ++ +WE LC +  +     +  LRSVV AL
Sbjct: 33  DVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVS--PRPSLSLRSVVSAL 92

Query: 88  GGFRRLHSLYPFPPVIGSASCIPWGKDEVHLSLSLLSIRYYEKM 132
           GG+R L+ L    PV+     + W +D++ LSLSL  + YYE++
Sbjct: 93  GGYRCLYFLC-IRPVLARLPKLLWTRDQLQLSLSLYCVHYYERL 133

[Close]

BLAST of Cp4.1LG11g01250 vs. TAIR 10
Match: AT5G39250.1 (F-box family protein )

HSP 1 Score: 41.6 bits (96), Expect = 6.1e-04
Identity = 16/47 (34.04%), Postives = 26/47 (55.32%), Query Frame = 0


Query: 27 DNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANI 74
          + +L  VF  ++   LA+  GV KQW   A D++ W+  C K W ++
Sbjct: 4  EEVLKNVFPLLEGEDLASCMGVCKQWRDIARDDFYWKCQCAKKWPSV 50

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g01250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STX3	5.7e-39	60.29	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	4.4e-23	42.03	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]
Q9LUB6	3.8e-11	35.58	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]

BLAST of Cp4.1LG11g01250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023522812.1	1.49e-98	100.00	F-box protein GID2-like [Cucurbita pepo subsp. pepo] >XP_023547045.1 F-box prote...	[more]
KAG6598351.1	4.66e-95	97.12	F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029322....	[more]
XP_022962352.1	3.15e-93	95.68	F-box protein GID2-like [Cucurbita moschata]	[more]
XP_022996700.1	2.59e-92	95.68	F-box protein GID2-like [Cucurbita maxima]	[more]
XP_008445558.1	1.56e-76	82.27	PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0060929.1 F-box protein GI...	[more]

BLAST of Cp4.1LG11g01250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HCI1	1.53e-93	95.68	F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111462823 PE=4 SV=1	[more]
A0A6J1K7I7	1.25e-92	95.68	F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111491869 PE=4 SV=1	[more]
A0A5A7V5E1	7.54e-77	82.27	F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BDV6	7.54e-77	82.27	F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103488538 PE=4 SV=1	[more]
A0A0A0LR75	2.97e-76	81.82	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G355020 PE=4 ...	[more]

BLAST of Cp4.1LG11g01250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24210.1	4.0e-40	60.29	F-box family protein	[more]
AT5G48170.1	2.7e-12	35.58	F-box family protein	[more]
AT5G39250.1	6.1e-04	34.04	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 27..67 e-value: 2.5E-7 score: 30.5
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 19..65 score: 9.179537
None	No IPR available	GENE3D	1.20.1280.50		coord: 3..107 e-value: 4.2E-12 score: 47.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR12874:SF22	F-BOX PROTEIN GID2-LIKE	coord: 98..134 coord: 3..101
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 98..134 coord: 3..101
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 15..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g01250.1	Cp4.1LG11g01250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding