Cp4.1LG11g00790 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g00790
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ethylene-responsive transcription factor ESR2-like
Location	Cp4.1LG11: 174355 .. 174879 (+)
RNA-Seq Expression	Cp4.1LG11g00790
Synteny	Cp4.1LG11g00790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTCCAGTCCCAGCCGTGGGGCCGAGTTCGTGTGGTCCGGAGCGCAGAGGATGAACACCGCTTCTCCCACTCTCGACATGCTTCTTCTTCGTGATTTCCTCAACTTCCCTTCTGCCAATGCTAGTAATCCAAAGCCCCCTTCATTGATTAATAATACCTTGGCGACCAAAATAGCAGCCTCTCCCCCAGATCACTCCGTACAACAACAAAACTACTACTCCTCCCAGTTTCTCCCAAAGGACTCCCCCGATTCGGGGTTGCTGGAAGAGATAATCCACGGCTTCTTCCCGAAATCCGATTATTCCAAAGCCAACTCCGATGATCAATCCGACCCGGTTGCGGATGAATTGAAGAACCAACACTCACCTAGCTTCACTACTGACTTGGATTTATTGGATTACCCAGATTGTAGCATCCAGGCGGAGTTTAATGAAGGTGGTGAGCGTGTATTTGGGAATCCTGAGAATGTGATGGTGGATGACATCTTCCAATGCCCTGAGAGCGTGTATTTTGTGTTATGA

mRNA sequence

ATGTTTTCCAGTCCCAGCCGTGGGGCCGAGTTCGTGTGGTCCGGAGCGCAGAGGATGAACACCGCTTCTCCCACTCTCGACATGCTTCTTCTTCGTGATTTCCTCAACTTCCCTTCTGCCAATGCTAGTAATCCAAAGCCCCCTTCATTGATTAATAATACCTTGGCGACCAAAATAGCAGCCTCTCCCCCAGATCACTCCGTACAACAACAAAACTACTACTCCTCCCAGTTTCTCCCAAAGGACTCCCCCGATTCGGGGTTGCTGGAAGAGATAATCCACGGCTTCTTCCCGAAATCCGATTATTCCAAAGCCAACTCCGATGATCAATCCGACCCGGTTGCGGATGAATTGAAGAACCAACACTCACCTAGCTTCACTACTGACTTGGATTTATTGGATTACCCAGATTGTAGCATCCAGGCGGAGTTTAATGAAGGTGGTGAGCGTGTATTTGGGAATCCTGAGAATGTGATGGTGGATGACATCTTCCAATGCCCTGAGAGCGTGTATTTTGTGTTATGA

Coding sequence (CDS)

ATGTTTTCCAGTCCCAGCCGTGGGGCCGAGTTCGTGTGGTCCGGAGCGCAGAGGATGAACACCGCTTCTCCCACTCTCGACATGCTTCTTCTTCGTGATTTCCTCAACTTCCCTTCTGCCAATGCTAGTAATCCAAAGCCCCCTTCATTGATTAATAATACCTTGGCGACCAAAATAGCAGCCTCTCCCCCAGATCACTCCGTACAACAACAAAACTACTACTCCTCCCAGTTTCTCCCAAAGGACTCCCCCGATTCGGGGTTGCTGGAAGAGATAATCCACGGCTTCTTCCCGAAATCCGATTATTCCAAAGCCAACTCCGATGATCAATCCGACCCGGTTGCGGATGAATTGAAGAACCAACACTCACCTAGCTTCACTACTGACTTGGATTTATTGGATTACCCAGATTGTAGCATCCAGGCGGAGTTTAATGAAGGTGGTGAGCGTGTATTTGGGAATCCTGAGAATGTGATGGTGGATGACATCTTCCAATGCCCTGAGAGCGTGTATTTTGTGTTATGA

Protein sequence

MFSSPSRGAEFVWSGAQRMNTASPTLDMLLLRDFLNFPSANASNPKPPSLINNTLATKIAASPPDHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKSDYSKANSDDQSDPVADELKNQHSPSFTTDLDLLDYPDCSIQAEFNEGGERVFGNPENVMVDDIFQCPESVYFVL

Homology

[Close]

BLAST of Cp4.1LG11g00790 vs. NCBI nr
Match: XP_023545787.1 (ethylene-responsive transcription factor ESR2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 357 bits (916), Expect = 4.62e-122
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MFSSPSRGAEFVWSGAQRMNTASPTLDMLLLRDFLNFPSANASNPKPPSLINNTLATKIA 60
           MFSSPSRGAEFVWSGAQRMNTASPTLDMLLLRDFLNFPSANASNPKPPSLINNTLATKIA
Sbjct: 155 MFSSPSRGAEFVWSGAQRMNTASPTLDMLLLRDFLNFPSANASNPKPPSLINNTLATKIA 214

Query: 61  ASPPDHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKSDYSKANSDDQSDPVADELKN 120
           ASPPDHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKSDYSKANSDDQSDPVADELKN
Sbjct: 215 ASPPDHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKSDYSKANSDDQSDPVADELKN 274

Query: 121 QHSPSFTTDLDLLDYPDCSIQAEFNEGGERVFGNPENVMVDDIFQCPESVYFVL 174
           QHSPSFTTDLDLLDYPDCSIQAEFNEGGERVFGNPENVMVDDIFQCPESVYFVL
Sbjct: 275 QHSPSFTTDLDLLDYPDCSIQAEFNEGGERVFGNPENVMVDDIFQCPESVYFVL 328

[Close]

BLAST of Cp4.1LG11g00790 vs. NCBI nr
Match: XP_022962059.1 (ethylene-responsive transcription factor ESR2-like [Cucurbita moschata])

HSP 1 Score: 322 bits (825), Expect = 4.55e-108
Identity = 157/174 (90.23%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MFSSPSRGAEFVWSGAQRMNTASPTLDMLLLRDFLNFPSANASNPKPPSLINNTLATKIA 60
           MFS+PSRGA+F+WSGAQR+NTASPTLDMLLLRDFLNFPSANASNPKPPSLINNT ATKIA
Sbjct: 154 MFSTPSRGADFLWSGAQRINTASPTLDMLLLRDFLNFPSANASNPKPPSLINNTAATKIA 213

Query: 61  ASPP------DHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKSDYSKANSDDQSDPV 120
           ASPP      DHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKSDYS +NSD+QSDPV
Sbjct: 214 ASPPPPPPPPDHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKSDYSNSNSDEQSDPV 273

Query: 121 ADELKNQHSPSFTTDLDLLDYPDCSIQAEFNEGGERVFGNPENVMVDDIFQCPE 168
           ADEL NQHSPSFT DLDLLDYPDCSIQAEFNEGGERVFGNPENVM+DDIFQCPE
Sbjct: 274 ADELNNQHSPSFTIDLDLLDYPDCSIQAEFNEGGERVFGNPENVMLDDIFQCPE 327

[Close]

BLAST of Cp4.1LG11g00790 vs. NCBI nr
Match: XP_022996770.1 (ethylene-responsive transcription factor ESR2-like [Cucurbita maxima])

HSP 1 Score: 312 bits (799), Expect = 3.44e-104
Identity = 151/169 (89.35%), Postives = 159/169 (94.08%), Query Frame = 0


Query: 1   MFSSPSRGAEFVWSGAQRMNTASPTLDMLLLRDFLNFPSANASNPKPPSLINNTLATKIA 60
           MFS+PSRGAEF+WSGAQR+NTASPTLDMLLLRDFLNFPSANASNPKPPSL+NNT ATKIA
Sbjct: 154 MFSTPSRGAEFLWSGAQRINTASPTLDMLLLRDFLNFPSANASNPKPPSLVNNTAATKIA 213

Query: 61  ASPP-DHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKSDYSKANSDDQSDPVADELK 120
           ASPP DHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKS+ S +N  DQSDP ADEL 
Sbjct: 214 ASPPPDHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKSENSNSNPHDQSDPAADELN 273

Query: 121 NQHSPSFTTDLDLLDYPDCSIQAEFNEGGERVFGNPENVMVDDIFQCPE 168
           +QHSPSFTTDLDLLDYPDCSIQ EFNEGGER FGNPENV+VDDIFQCPE
Sbjct: 274 SQHSPSFTTDLDLLDYPDCSIQGEFNEGGERAFGNPENVVVDDIFQCPE 322

[Close]

BLAST of Cp4.1LG11g00790 vs. NCBI nr
Match: KAG6598241.1 (Ethylene-responsive transcription factor ESR2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 291 bits (745), Expect = 1.65e-95
Identity = 152/204 (74.51%), Postives = 158/204 (77.45%), Query Frame = 0


Query: 1   MFSSPSRGAEFVWSGAQRMNTASPTLDMLLLRDFLNFPSANASNPKPPSLINNTLATKIA 60
           MFS+PSRGA+F+WSGAQR+NTASPTLDMLLLRDFLNFPSANASN  P SL NNT ATKIA
Sbjct: 154 MFSTPSRGADFLWSGAQRINTASPTLDMLLLRDFLNFPSANASNSNPTSLNNNTAATKIA 213

Query: 61  ASPP-----------DHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKSDYSKA---- 120
           ASPP           DHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKSDYS +    
Sbjct: 214 ASPPPPPPPPPPPPPDHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKSDYSNSKSDY 273

Query: 121 ---------------------NSDDQSDPVADELKNQHSPSFTTDLDLLDYPDCSIQAEF 168
                                NSDDQSDPVADEL NQHSPSFTTDLDLLDYPDCSIQAEF
Sbjct: 274 SNSNSKSDYSNSNSKSDYSNSNSDDQSDPVADELNNQHSPSFTTDLDLLDYPDCSIQAEF 333

[Close]

BLAST of Cp4.1LG11g00790 vs. NCBI nr
Match: KAG7029219.1 (Ethylene-responsive transcription factor ESR2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 281 bits (719), Expect = 2.14e-91
Identity = 149/217 (68.66%), Postives = 156/217 (71.89%), Query Frame = 0


Query: 1   MFSSPSRGAEFVWSGAQRMNTASPTLDMLLLRDFLNFPSANASNPKPPSLINNTLATKIA 60
           MFS+PSRGA+F+WSGAQR+NTASPTLDMLLLRDFLNFPSANASN  P SL NNT ATK  
Sbjct: 154 MFSTPSRGADFLWSGAQRINTASPTLDMLLLRDFLNFPSANASNSNPTSLNNNTAATKKI 213

Query: 61  ASPP------DHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKSDY------------ 120
           A PP      DHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKSDY            
Sbjct: 214 APPPPPPPPPDHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKSDYCNSNSKSDYCNS 273

Query: 121 -------------------------------SKANSDDQSDPVADELKNQHSPSFTTDLD 168
                                          S +NSDDQSDPVADEL  QHSP+FTTDLD
Sbjct: 274 NSKSDYCNSNSKSDYCNSNSKSDYCNSKSDYSNSNSDDQSDPVADELNKQHSPTFTTDLD 333

[Close]

BLAST of Cp4.1LG11g00790 vs. ExPASy TrEMBL
Match: A0A6J1HFS9 (ethylene-responsive transcription factor ESR2-like OS=Cucurbita moschata OX=3662 GN=LOC111462631 PE=4 SV=1)

HSP 1 Score: 322 bits (825), Expect = 2.20e-108
Identity = 157/174 (90.23%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MFSSPSRGAEFVWSGAQRMNTASPTLDMLLLRDFLNFPSANASNPKPPSLINNTLATKIA 60
           MFS+PSRGA+F+WSGAQR+NTASPTLDMLLLRDFLNFPSANASNPKPPSLINNT ATKIA
Sbjct: 154 MFSTPSRGADFLWSGAQRINTASPTLDMLLLRDFLNFPSANASNPKPPSLINNTAATKIA 213

Query: 61  ASPP------DHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKSDYSKANSDDQSDPV 120
           ASPP      DHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKSDYS +NSD+QSDPV
Sbjct: 214 ASPPPPPPPPDHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKSDYSNSNSDEQSDPV 273

Query: 121 ADELKNQHSPSFTTDLDLLDYPDCSIQAEFNEGGERVFGNPENVMVDDIFQCPE 168
           ADEL NQHSPSFT DLDLLDYPDCSIQAEFNEGGERVFGNPENVM+DDIFQCPE
Sbjct: 274 ADELNNQHSPSFTIDLDLLDYPDCSIQAEFNEGGERVFGNPENVMLDDIFQCPE 327

[Close]

BLAST of Cp4.1LG11g00790 vs. ExPASy TrEMBL
Match: A0A6J1K7P9 (ethylene-responsive transcription factor ESR2-like OS=Cucurbita maxima OX=3661 GN=LOC111491904 PE=4 SV=1)

HSP 1 Score: 312 bits (799), Expect = 1.66e-104
Identity = 151/169 (89.35%), Postives = 159/169 (94.08%), Query Frame = 0


Query: 1   MFSSPSRGAEFVWSGAQRMNTASPTLDMLLLRDFLNFPSANASNPKPPSLINNTLATKIA 60
           MFS+PSRGAEF+WSGAQR+NTASPTLDMLLLRDFLNFPSANASNPKPPSL+NNT ATKIA
Sbjct: 154 MFSTPSRGAEFLWSGAQRINTASPTLDMLLLRDFLNFPSANASNPKPPSLVNNTAATKIA 213

Query: 61  ASPP-DHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKSDYSKANSDDQSDPVADELK 120
           ASPP DHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKS+ S +N  DQSDP ADEL 
Sbjct: 214 ASPPPDHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKSENSNSNPHDQSDPAADELN 273

Query: 121 NQHSPSFTTDLDLLDYPDCSIQAEFNEGGERVFGNPENVMVDDIFQCPE 168
           +QHSPSFTTDLDLLDYPDCSIQ EFNEGGER FGNPENV+VDDIFQCPE
Sbjct: 274 SQHSPSFTTDLDLLDYPDCSIQGEFNEGGERAFGNPENVVVDDIFQCPE 322

[Close]

BLAST of Cp4.1LG11g00790 vs. ExPASy TrEMBL
Match: A0A0A0LMT0 (AP2/ERF domain-containing transcription factor OS=Cucumis sativus OX=3659 GN=Csa_2G349090 PE=4 SV=1)

HSP 1 Score: 155 bits (392), Expect = 8.05e-43
Identity = 96/185 (51.89%), Postives = 116/185 (62.70%), Query Frame = 0


Query: 1   MFSSPSRGAEFVWSG-AQRMNTASPTLDMLLLRDFLNFPSANASNPKPPSL-----INNT 60
           +FS+P+RG +F+WSG AQR+NTASPTLDMLLLRDFLNFPS+N ++   PS       NN 
Sbjct: 170 LFSTPNRGPDFLWSGHAQRINTASPTLDMLLLRDFLNFPSSNYNHSSKPSYSINTTTNNN 229

Query: 61  LATKIAASPPDHSVQQQNYYSSQFLPKDSPDSGLLEEIIHGFFPKSDYSKANSDDQSDPV 120
             TKI   PP         YSS+FLPKDSPDSGLLEE+IHGFFPKS  S  N+ D     
Sbjct: 230 STTKITPPPPP-----PENYSSEFLPKDSPDSGLLEEVIHGFFPKSHDSNTNNSDDYFNN 289

Query: 121 ADELKNQHSPSFTTDLDLLDYP--DCS---------IQAEFNEGGERVFGNPENVMVDDI 168
            DE KN +       LDLLDY   D S         I  +  + G R+FG+  N+++DDI
Sbjct: 290 NDENKNANLSG--QHLDLLDYQLADDSFNNNNNTTLINQDIPDHG-RLFGDAHNLILDDI 346

[Close]

BLAST of Cp4.1LG11g00790 vs. ExPASy TrEMBL
Match: A0A6J1KU79 (ethylene-responsive transcription factor ESR2-like OS=Cucurbita maxima OX=3661 GN=LOC111496450 PE=4 SV=1)

HSP 1 Score: 150 bits (380), Expect = 2.15e-41
Identity = 91/180 (50.56%), Postives = 118/180 (65.56%), Query Frame = 0


Query: 1   MFSSPSRGAEFVWSGAQRMNTASPTLDMLLLRDFLNFPSANASNPKPPSLINNTLATKIA 60
           +F +P+RG++FVWSG+ ++NTASPTLDMLLL DFLNFPS+N+S P P S+ N       +
Sbjct: 136 IFCTPNRGSDFVWSGSHKINTASPTLDMLLLGDFLNFPSSNSS-PNPASINNTAPVISKS 195

Query: 61  ASPPDHSVQQQNYYSSQFLPK-DSPDSGLLEEIIHGFFPKS--DYSKANSDDQSDPVADE 120
              P H     NY SS+FLPK DSPDSGLLEEIIHGFFPKS  + S  +++  SD   D 
Sbjct: 196 LGDPLHL----NYSSSEFLPKEDSPDSGLLEEIIHGFFPKSHSNSSTPSANFNSDLPFDA 255

Query: 121 LKNQHSPSFTTD-LDLLDYPDC------SIQAEFNEGGERVF--GNPENVMVDDIFQCPE 168
            KN ++ +   D LD LDYPD       +  A FN   +     G+P+N+++DDIFQCPE
Sbjct: 256 FKNDNNSANNLDHLDNLDYPDSIHHILDNFNAAFNPPPQLGLPHGHPQNLILDDIFQCPE 310

[Close]

BLAST of Cp4.1LG11g00790 vs. ExPASy TrEMBL
Match: A0A6J1GJ38 (ethylene-responsive transcription factor ESR2-like OS=Cucurbita moschata OX=3662 GN=LOC111454668 PE=4 SV=1)

HSP 1 Score: 150 bits (380), Expect = 2.20e-41
Identity = 93/179 (51.96%), Postives = 116/179 (64.80%), Query Frame = 0


Query: 2   FSSPSRGAEFVWSGAQRMNTASPTLDMLLLRDFLNFPSANASNPKPPSLINNTLATKIAA 61
           F +P+RG+EFVWSG+ ++NTASPTLDMLLLRDFLNFPS+N+S   P S+   T     + 
Sbjct: 138 FCTPNRGSEFVWSGSHKINTASPTLDMLLLRDFLNFPSSNSSL-NPGSINCTTPVISKSL 197

Query: 62  SPPDHSVQQQNYYSSQFLPK-DSPDSGLLEEIIHGFFPKS--DYSKANSDDQSDPVADEL 121
             P H    QNY SS+FLPK DSPDSGLLEEIIHGFFPKS  + S   ++  SD   D  
Sbjct: 198 GDPLH----QNYSSSEFLPKEDSPDSGLLEEIIHGFFPKSHSNSSTPTTNFNSDLSLDAF 257

Query: 122 KNQH-SPSFTTDLDLLDYPDC------SIQAEFNEGGERVF--GNPENVMVDDIFQCPE 168
           KN + S +   DLD LDYPD       +  A FN   +     G+P+N+++DDIF CPE
Sbjct: 258 KNDNNSANNVDDLDNLDYPDSIHHILDNFNAAFNPPPQLGLPHGHPQNLILDDIFHCPE 311

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g00790 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g00790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545787.1	4.62e-122	100.00	ethylene-responsive transcription factor ESR2 [Cucurbita pepo subsp. pepo]	[more]
XP_022962059.1	4.55e-108	90.23	ethylene-responsive transcription factor ESR2-like [Cucurbita moschata]	[more]
XP_022996770.1	3.44e-104	89.35	ethylene-responsive transcription factor ESR2-like [Cucurbita maxima]	[more]
KAG6598241.1	1.65e-95	74.51	Ethylene-responsive transcription factor ESR2, partial [Cucurbita argyrosperma s...	[more]
KAG7029219.1	2.14e-91	68.66	Ethylene-responsive transcription factor ESR2, partial [Cucurbita argyrosperma s...	[more]

BLAST of Cp4.1LG11g00790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HFS9	2.20e-108	90.23	ethylene-responsive transcription factor ESR2-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1K7P9	1.66e-104	89.35	ethylene-responsive transcription factor ESR2-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A0A0LMT0	8.05e-43	51.89	AP2/ERF domain-containing transcription factor OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A6J1KU79	2.15e-41	50.56	ethylene-responsive transcription factor ESR2-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1GJ38	2.20e-41	51.96	ethylene-responsive transcription factor ESR2-like OS=Cucurbita moschata OX=3662...	[more]

BLAST of Cp4.1LG11g00790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g00790.1	Cp4.1LG11g00790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity