Cp4.1LG10g12390 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g12390
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription termination factor MTEF18, mitochondrial-like
Location	Cp4.1LG10: 9665611 .. 9666102 (-)
RNA-Seq Expression	Cp4.1LG10g12390
Synteny	Cp4.1LG10g12390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTGGATAATTGGATCTTCCTCTGTTGCCTCGAACCCTAGATTTTATCGCACTAAAAAGCCTCCTCAAACAGGAGAATGTGGAAATTCCGGGGGAATTTCGACTAGGGATAGCAGGAATGGTAATCGGATTCCTCGGGCCACTAGAAAGGCGGCTCAGTTTATGGATGCTGAGAATATGAGTAGAAATTCACCGATCTTTCTTGAAAAACTTCTAGGAAGAGTTGAACATGAGAGCGATATTGGGCGATCGATTACTCGATTCTTGCGCTATCATCCGATTAATGAATTCGAGCCTTTCTTTGAGAGTGTAGGCCTGCAACCTGCAGAGTATAATGCGTTTCTTCCCCGTGATTTGATGTTCTTGAGTGATGATAGTTTATTGCTAGAGAACTATAATGTGTTGTGTAACTATGGAATTGAACGAAATAAGATAGGGAAGATCTACAAGGAGGCGACTCAGATCTTGGTCTCAGCCAAGCTAGTGTAG

mRNA sequence

ATGTATTGGATAATTGGATCTTCCTCTGTTGCCTCGAACCCTAGATTTTATCGCACTAAAAAGCCTCCTCAAACAGGAGAATGTGGAAATTCCGGGGGAATTTCGACTAGGGATAGCAGGAATGGTAATCGGATTCCTCGGGCCACTAGAAAGGCGGCTCAGTTTATGGATGCTGAGAATATGAGTAGAAATTCACCGATCTTTCTTGAAAAACTTCTAGGAAGAGTTGAACATGAGAGCGATATTGGGCGATCGATTACTCGATTCTTGCGCTATCATCCGATTAATGAATTCGAGCCTTTCTTTGAGAGTGTAGGCCTGCAACCTGCAGAGTATAATGCGTTTCTTCCCCGTGATTTGATGTTCTTGAGTGATGATAGTTTATTGCTAGAGAACTATAATGTGTTGTGTAACTATGGAATTGAACGAAATAAGATAGGGAAGATCTACAAGGAGGCGACTCAGATCTTGGTCTCAGCCAAGCTAGTGTAG

Coding sequence (CDS)

ATGTATTGGATAATTGGATCTTCCTCTGTTGCCTCGAACCCTAGATTTTATCGCACTAAAAAGCCTCCTCAAACAGGAGAATGTGGAAATTCCGGGGGAATTTCGACTAGGGATAGCAGGAATGGTAATCGGATTCCTCGGGCCACTAGAAAGGCGGCTCAGTTTATGGATGCTGAGAATATGAGTAGAAATTCACCGATCTTTCTTGAAAAACTTCTAGGAAGAGTTGAACATGAGAGCGATATTGGGCGATCGATTACTCGATTCTTGCGCTATCATCCGATTAATGAATTCGAGCCTTTCTTTGAGAGTGTAGGCCTGCAACCTGCAGAGTATAATGCGTTTCTTCCCCGTGATTTGATGTTCTTGAGTGATGATAGTTTATTGCTAGAGAACTATAATGTGTTGTGTAACTATGGAATTGAACGAAATAAGATAGGGAAGATCTACAAGGAGGCGACTCAGATCTTGGTCTCAGCCAAGCTAGTGTAG

Protein sequence

MYWIIGSSSVASNPRFYRTKKPPQTGECGNSGGISTRDSRNGNRIPRATRKAAQFMDAENMSRNSPIFLEKLLGRVEHESDIGRSITRFLRYHPINEFEPFFESVGLQPAEYNAFLPRDLMFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQILVSAKLV

Homology

[Close]

BLAST of Cp4.1LG10g12390 vs. ExPASy Swiss-Prot
Match: Q9M219 (Transcription termination factor MTEF18, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF18 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.3e-14
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 0


Query: 49  TRKAAQFMDAENMSRNSPIFLEKLLGRVEHE-SDIGRSITRFLRYHPINEFEPFFESVGL 108
           T ++  +  AE ++ N+ + +  L+ +++       +S+ + L YHPINEFE FFES+G+
Sbjct: 47  TTRSLSYTHAEQIASNASVSIRNLILKLDFSVPTFSKSLRKHLSYHPINEFEFFFESIGI 106

Query: 109 QPAEYNAFLPRDLMFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQILV 159
             +E + FLP    F S+D  +L+    L  +G   NK+GK+YKE   + V
Sbjct: 107 DYSEVSEFLPEKKFFFSEDRTVLDAAFALSGFGFPWNKLGKLYKEERLVFV 157

[Close]

BLAST of Cp4.1LG10g12390 vs. NCBI nr
Match: XP_022967908.1 (transcription termination factor MTEF18, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 306 bits (783), Expect = 4.68e-104
Identity = 152/163 (93.25%), Postives = 154/163 (94.48%), Query Frame = 0


Query: 1   MYWIIGSSSVASNPRFYRTKKPPQTGECGNSGGISTRDSRNGNRIPRATRKAAQFMDAEN 60
           MYWIIGSS VASNPRFYRTKKPPQTGECGNSGGISTR SRNGNRI RATRK AQFMDAEN
Sbjct: 29  MYWIIGSSPVASNPRFYRTKKPPQTGECGNSGGISTRGSRNGNRISRATRKEAQFMDAEN 88

Query: 61  MSRNSPIFLEKLLGRVEHESDIGRSITRFLRYHPINEFEPFFESVGLQPAEYNAFLPRDL 120
           MSRNSPIFLEKLLGRVEHESD GRSITRFL YHPINEFEPFFE+ GLQPAEYNAFLP DL
Sbjct: 89  MSRNSPIFLEKLLGRVEHESDTGRSITRFLLYHPINEFEPFFENAGLQPAEYNAFLPCDL 148

Query: 121 MFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQILVSAKLV 163
           MF SDDSLLLENYNVLC+YGIERNKIGKIYKEATQILVSAKLV
Sbjct: 149 MFSSDDSLLLENYNVLCSYGIERNKIGKIYKEATQILVSAKLV 191

[Close]

BLAST of Cp4.1LG10g12390 vs. NCBI nr
Match: KAG7033489.1 (Transcription termination factor MTEF18, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 281 bits (720), Expect = 5.20e-94
Identity = 141/156 (90.38%), Postives = 141/156 (90.38%), Query Frame = 0


Query: 1   MYWIIGSSSVASNPRFYRTKKPPQTGECGNSGGISTRDSRNGNRIPRATRKAAQFMDAEN 60
           MYWIIGSS VASNPRFYRTKKPPQTGECGNSGGISTR SRNG           QFMDAEN
Sbjct: 29  MYWIIGSSPVASNPRFYRTKKPPQTGECGNSGGISTRVSRNG----------IQFMDAEN 88

Query: 61  MSRNSPIFLEKLLGRVEHESDIGRSITRFLRYHPINEFEPFFESVGLQPAEYNAFLPRDL 120
           MSRNSPIFLEKLLGRVEHESDIGR ITRFLRYHPINEFEPFFESVGLQPAEYN FLPRDL
Sbjct: 89  MSRNSPIFLEKLLGRVEHESDIGRLITRFLRYHPINEFEPFFESVGLQPAEYNVFLPRDL 148

Query: 121 MFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQI 156
           MFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQI
Sbjct: 149 MFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQI 174

[Close]

BLAST of Cp4.1LG10g12390 vs. NCBI nr
Match: XP_038882474.1 (transcription termination factor MTEF18, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 256 bits (654), Expect = 2.42e-79
Identity = 131/170 (77.06%), Postives = 138/170 (81.18%), Query Frame = 0


Query: 1   MYWIIGSSSVASNPRFYRTKKPPQTGECGNSGGISTRDSRNGNRIPRATRKAAQ------ 60
           +YW IG S VAS PRFYRTKK PQT ECGNSG +    SRNG+RI RATRK AQ      
Sbjct: 29  LYWQIGFSPVASGPRFYRTKKAPQTDECGNSGEMLNMGSRNGHRISRATRKEAQAALLEY 88

Query: 61  --------FMDAENMSRNSPIFLEKLLGRVEHESDIGRSITRFLRYHPINEFEPFFESVG 120
                    MDAENMS+NSPIFL KLLGRVEHE DIGRSITRFLRYHPINEFEPFFESVG
Sbjct: 89  LHSTRGIQLMDAENMSKNSPIFLGKLLGRVEHEGDIGRSITRFLRYHPINEFEPFFESVG 148

Query: 121 LQPAEYNAFLPRDLMFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQI 156
           LQPAEY+ FLPR+LMFLSDD LLLENY+VLCNYGIERNKIGKIYKEATQI
Sbjct: 149 LQPAEYDGFLPRNLMFLSDDDLLLENYHVLCNYGIERNKIGKIYKEATQI 198

[Close]

BLAST of Cp4.1LG10g12390 vs. NCBI nr
Match: XP_022925230.1 (transcription termination factor MTEF18, mitochondrial-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 251 bits (642), Expect = 9.78e-78
Identity = 126/156 (80.77%), Postives = 135/156 (86.54%), Query Frame = 0


Query: 1   MYWIIGSSSVASNPRFYRTKKPPQTGECGNSGGISTRDSRNGNRIPRATRKAAQFMDAEN 60
           +YW IG S V  NPRFY TKK PQ+GECGNS    T  S NG+RI RA RK AQFMDAEN
Sbjct: 29  LYWRIGFSPVFLNPRFYGTKKSPQSGECGNS----TTGSGNGHRISRAIRKEAQFMDAEN 88

Query: 61  MSRNSPIFLEKLLGRVEHESDIGRSITRFLRYHPINEFEPFFESVGLQPAEYNAFLPRDL 120
           MS+NSPIFL KLLGRVE+E +IGRSITRFLRYHPINEFEPFFESVGLQPAEYN FLPR++
Sbjct: 89  MSKNSPIFLAKLLGRVENEGEIGRSITRFLRYHPINEFEPFFESVGLQPAEYNEFLPREV 148

Query: 121 MFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQI 156
           MFLSDD LLLENY+VLCNYGIERNKIGKIYKEATQI
Sbjct: 149 MFLSDDDLLLENYHVLCNYGIERNKIGKIYKEATQI 180

[Close]

BLAST of Cp4.1LG10g12390 vs. NCBI nr
Match: XP_022158597.1 (transcription termination factor MTEF18, mitochondrial-like [Momordica charantia])

HSP 1 Score: 245 bits (625), Expect = 4.84e-75
Identity = 122/166 (73.49%), Postives = 134/166 (80.72%), Query Frame = 0


Query: 5   IGSSSVASNPRFYRTKKPPQTGECGNSGGISTRDSRNGNRIPRATRKAAQ---------- 64
           IGSS  A NPRFYRTK+  Q GEC N GG+ TR  RNG+RI RATRK AQ          
Sbjct: 32  IGSSPAARNPRFYRTKRAHQAGECENFGGVPTRSGRNGHRISRATRKEAQAALLEYLHST 91

Query: 65  ----FMDAENMSRNSPIFLEKLLGRVEHESDIGRSITRFLRYHPINEFEPFFESVGLQPA 124
               FMDAENMS+NSP+FLEKLLG+VE++ DIGRSITRFLRYHPINEFEPFFES GL PA
Sbjct: 92  RGVQFMDAENMSKNSPLFLEKLLGKVENDGDIGRSITRFLRYHPINEFEPFFESAGLHPA 151

Query: 125 EYNAFLPRDLMFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQI 156
           EYNAFLPR+LMFL+DD LLLENY VLCNYG+E+NKIGKIYKEATQI
Sbjct: 152 EYNAFLPRELMFLNDDGLLLENYRVLCNYGVEQNKIGKIYKEATQI 197

[Close]

BLAST of Cp4.1LG10g12390 vs. ExPASy TrEMBL
Match: A0A6J1HWI4 (transcription termination factor MTEF18, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111467283 PE=4 SV=1)

HSP 1 Score: 306 bits (783), Expect = 2.27e-104
Identity = 152/163 (93.25%), Postives = 154/163 (94.48%), Query Frame = 0


Query: 1   MYWIIGSSSVASNPRFYRTKKPPQTGECGNSGGISTRDSRNGNRIPRATRKAAQFMDAEN 60
           MYWIIGSS VASNPRFYRTKKPPQTGECGNSGGISTR SRNGNRI RATRK AQFMDAEN
Sbjct: 29  MYWIIGSSPVASNPRFYRTKKPPQTGECGNSGGISTRGSRNGNRISRATRKEAQFMDAEN 88

Query: 61  MSRNSPIFLEKLLGRVEHESDIGRSITRFLRYHPINEFEPFFESVGLQPAEYNAFLPRDL 120
           MSRNSPIFLEKLLGRVEHESD GRSITRFL YHPINEFEPFFE+ GLQPAEYNAFLP DL
Sbjct: 89  MSRNSPIFLEKLLGRVEHESDTGRSITRFLLYHPINEFEPFFENAGLQPAEYNAFLPCDL 148

Query: 121 MFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQILVSAKLV 163
           MF SDDSLLLENYNVLC+YGIERNKIGKIYKEATQILVSAKLV
Sbjct: 149 MFSSDDSLLLENYNVLCSYGIERNKIGKIYKEATQILVSAKLV 191

[Close]

BLAST of Cp4.1LG10g12390 vs. ExPASy TrEMBL
Match: A0A6J1EHC5 (transcription termination factor MTEF18, mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111432534 PE=3 SV=1)

HSP 1 Score: 251 bits (642), Expect = 4.74e-78
Identity = 126/156 (80.77%), Postives = 135/156 (86.54%), Query Frame = 0


Query: 1   MYWIIGSSSVASNPRFYRTKKPPQTGECGNSGGISTRDSRNGNRIPRATRKAAQFMDAEN 60
           +YW IG S V  NPRFY TKK PQ+GECGNS    T  S NG+RI RA RK AQFMDAEN
Sbjct: 29  LYWRIGFSPVFLNPRFYGTKKSPQSGECGNS----TTGSGNGHRISRAIRKEAQFMDAEN 88

Query: 61  MSRNSPIFLEKLLGRVEHESDIGRSITRFLRYHPINEFEPFFESVGLQPAEYNAFLPRDL 120
           MS+NSPIFL KLLGRVE+E +IGRSITRFLRYHPINEFEPFFESVGLQPAEYN FLPR++
Sbjct: 89  MSKNSPIFLAKLLGRVENEGEIGRSITRFLRYHPINEFEPFFESVGLQPAEYNEFLPREV 148

Query: 121 MFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQI 156
           MFLSDD LLLENY+VLCNYGIERNKIGKIYKEATQI
Sbjct: 149 MFLSDDDLLLENYHVLCNYGIERNKIGKIYKEATQI 180

[Close]

BLAST of Cp4.1LG10g12390 vs. ExPASy TrEMBL
Match: A0A6J1DXM2 (transcription termination factor MTEF18, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111025051 PE=3 SV=1)

HSP 1 Score: 245 bits (625), Expect = 2.34e-75
Identity = 122/166 (73.49%), Postives = 134/166 (80.72%), Query Frame = 0


Query: 5   IGSSSVASNPRFYRTKKPPQTGECGNSGGISTRDSRNGNRIPRATRKAAQ---------- 64
           IGSS  A NPRFYRTK+  Q GEC N GG+ TR  RNG+RI RATRK AQ          
Sbjct: 32  IGSSPAARNPRFYRTKRAHQAGECENFGGVPTRSGRNGHRISRATRKEAQAALLEYLHST 91

Query: 65  ----FMDAENMSRNSPIFLEKLLGRVEHESDIGRSITRFLRYHPINEFEPFFESVGLQPA 124
               FMDAENMS+NSP+FLEKLLG+VE++ DIGRSITRFLRYHPINEFEPFFES GL PA
Sbjct: 92  RGVQFMDAENMSKNSPLFLEKLLGKVENDGDIGRSITRFLRYHPINEFEPFFESAGLHPA 151

Query: 125 EYNAFLPRDLMFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQI 156
           EYNAFLPR+LMFL+DD LLLENY VLCNYG+E+NKIGKIYKEATQI
Sbjct: 152 EYNAFLPRELMFLNDDGLLLENYRVLCNYGVEQNKIGKIYKEATQI 197

[Close]

BLAST of Cp4.1LG10g12390 vs. ExPASy TrEMBL
Match: A0A1S4DU70 (transcription termination factor MTEF18, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103486064 PE=3 SV=1)

HSP 1 Score: 241 bits (614), Expect = 6.68e-75
Identity = 123/170 (72.35%), Postives = 136/170 (80.00%), Query Frame = 0


Query: 1   MYWIIGSSSVASNPRFYRTKKPPQTGECGNSGGISTRDSRNGNRIPRATRKAAQ------ 60
           +YW IG  SVASNPRFY  KK PQT E  NSGG+    SRNG+R+ RAT K AQ      
Sbjct: 30  LYWGIGFPSVASNPRFYGNKKAPQTEEYENSGGMLNMGSRNGHRVSRATIKEAQAALFEY 89

Query: 61  --------FMDAENMSRNSPIFLEKLLGRVEHESDIGRSITRFLRYHPINEFEPFFESVG 120
                   F+DAENMS+NSPIFL+KLLGRVEH+ DIGRS+ RFLRY+PINEFEPFFESVG
Sbjct: 90  LHSTRGIEFLDAENMSKNSPIFLKKLLGRVEHKGDIGRSVMRFLRYNPINEFEPFFESVG 149

Query: 121 LQPAEYNAFLPRDLMFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQI 156
           LQPAEYNAFLPR+LMFLSDD LLLEN++VLCNYGIERNK GKIYKEATQI
Sbjct: 150 LQPAEYNAFLPRNLMFLSDDDLLLENFHVLCNYGIERNKTGKIYKEATQI 199

[Close]

BLAST of Cp4.1LG10g12390 vs. ExPASy TrEMBL
Match: A0A6J1EEL8 (transcription termination factor MTEF18, mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111432534 PE=3 SV=1)

HSP 1 Score: 242 bits (617), Expect = 3.38e-74
Identity = 126/170 (74.12%), Postives = 135/170 (79.41%), Query Frame = 0


Query: 1   MYWIIGSSSVASNPRFYRTKKPPQTGECGNSGGISTRDSRNGNRIPRATRKAAQ------ 60
           +YW IG S V  NPRFY TKK PQ+GECGNS    T  S NG+RI RA RK AQ      
Sbjct: 29  LYWRIGFSPVFLNPRFYGTKKSPQSGECGNS----TTGSGNGHRISRAIRKEAQDALLEY 88

Query: 61  --------FMDAENMSRNSPIFLEKLLGRVEHESDIGRSITRFLRYHPINEFEPFFESVG 120
                   FMDAENMS+NSPIFL KLLGRVE+E +IGRSITRFLRYHPINEFEPFFESVG
Sbjct: 89  LHSTRGIQFMDAENMSKNSPIFLAKLLGRVENEGEIGRSITRFLRYHPINEFEPFFESVG 148

Query: 121 LQPAEYNAFLPRDLMFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQI 156
           LQPAEYN FLPR++MFLSDD LLLENY+VLCNYGIERNKIGKIYKEATQI
Sbjct: 149 LQPAEYNEFLPREVMFLSDDDLLLENYHVLCNYGIERNKIGKIYKEATQI 194

[Close]

BLAST of Cp4.1LG10g12390 vs. TAIR 10
Match: AT4G19650.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 131.7 bits (330), Expect = 5.2e-31
Identity = 57/99 (57.58%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 59  ENMSRNSPIFLEKLLGRV-EHESDIGRSITRFLRYHPINEFEPFFESVGLQPAEYNAFLP 118
           E++S+NSP F+  LL ++ +++ D+ + +T+FLRY+PINEFEPFFES+GL P E+  FLP
Sbjct: 90  EHISKNSPCFMSTLLSKIDDNQKDVSKGLTKFLRYNPINEFEPFFESLGLCPYEFETFLP 149

Query: 119 RDLMFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQI 157
           R LMFLSDD ++ EN++ LCNYGI R KIG++YKEA +I
Sbjct: 150 RKLMFLSDDGIMFENFHALCNYGIPRGKIGRMYKEAREI 188

[Close]

BLAST of Cp4.1LG10g12390 vs. TAIR 10
Match: AT5G06810.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 127.5 bits (319), Expect = 9.9e-30
Identity = 72/162 (44.44%), Postives = 100/162 (61.73%), Query Frame = 0


Query: 11  ASNPRFYRTKKPPQTGECGNSGGISTRDSRNGNRIPRATRKAA--------------QFM 70
           A  PR + T     TG    S     + +RNG +I    RK A              Q+M
Sbjct: 40  AQTPRSFAT----VTGNEVCSEKSKVKRTRNGFKITPNVRKLAEEAMLDYFYSTRGLQYM 99

Query: 71  DAENMSRNSPIFLEKLLGRVE--HESDIGRSITRFLRYHPINEFEPFFESVGLQPAEYNA 130
            AE+MS+NSPIF++ LL +V+    SDI +SITR+LR+HP+NEFEPF ES GL P+EYN 
Sbjct: 100 VAESMSKNSPIFIDNLLKKVDCVTASDINQSITRYLRFHPVNEFEPFLESSGLNPSEYNH 159

Query: 131 FLPRDLMFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQI 157
            +P D +FL ++  LLEN++VLC  G++  +IGKI+KEA ++
Sbjct: 160 LVPCDKVFLDEEGFLLENHHVLCYSGVDPKRIGKIFKEAREV 197

[Close]

BLAST of Cp4.1LG10g12390 vs. TAIR 10
Match: AT3G60400.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-15
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 0


Query: 49  TRKAAQFMDAENMSRNSPIFLEKLLGRVEHE-SDIGRSITRFLRYHPINEFEPFFESVGL 108
           T ++  +  AE ++ N+ + +  L+ +++       +S+ + L YHPINEFE FFES+G+
Sbjct: 47  TTRSLSYTHAEQIASNASVSIRNLILKLDFSVPTFSKSLRKHLSYHPINEFEFFFESIGI 106

Query: 109 QPAEYNAFLPRDLMFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQILV 159
             +E + FLP    F S+D  +L+    L  +G   NK+GK+YKE   + V
Sbjct: 107 DYSEVSEFLPEKKFFFSEDRTVLDAAFALSGFGFPWNKLGKLYKEERLVFV 157

[Close]

BLAST of Cp4.1LG10g12390 vs. TAIR 10
Match: AT5G45113.1 (mitochondrial transcription termination factor-related / mTERF-related )

HSP 1 Score: 44.3 bits (103), Expect = 1.1e-04
Identity = 18/30 (60.00%), Postives = 25/30 (83.33%), Query Frame = 0


Query: 129 LLENYNVLCNYGIERNKIGKIYKEATQILV 159
           + EN++VLC YGI R+KIG++YKEA +I V
Sbjct: 1   MFENFHVLCYYGIPRDKIGRLYKEAREIFV 30

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g12390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M219	3.3e-14	34.23	Transcription termination factor MTEF18, mitochondrial OS=Arabidopsis thaliana O...	[more]

BLAST of Cp4.1LG10g12390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022967908.1	4.68e-104	93.25	transcription termination factor MTEF18, mitochondrial-like [Cucurbita maxima]	[more]
KAG7033489.1	5.20e-94	90.38	Transcription termination factor MTEF18, mitochondrial, partial [Cucurbita argyr...	[more]
XP_038882474.1	2.42e-79	77.06	transcription termination factor MTEF18, mitochondrial-like [Benincasa hispida]	[more]
XP_022925230.1	9.78e-78	80.77	transcription termination factor MTEF18, mitochondrial-like isoform X2 [Cucurbit...	[more]
XP_022158597.1	4.84e-75	73.49	transcription termination factor MTEF18, mitochondrial-like [Momordica charantia...	[more]

BLAST of Cp4.1LG10g12390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HWI4	2.27e-104	93.25	transcription termination factor MTEF18, mitochondrial-like OS=Cucurbita maxima ...	[more]
A0A6J1EHC5	4.74e-78	80.77	transcription termination factor MTEF18, mitochondrial-like isoform X2 OS=Cucurb...	[more]
A0A6J1DXM2	2.34e-75	73.49	transcription termination factor MTEF18, mitochondrial-like OS=Momordica charant...	[more]
A0A1S4DU70	6.68e-75	72.35	transcription termination factor MTEF18, mitochondrial-like OS=Cucumis melo OX=3...	[more]
A0A6J1EEL8	3.38e-74	74.12	transcription termination factor MTEF18, mitochondrial-like isoform X1 OS=Cucurb...	[more]

BLAST of Cp4.1LG10g12390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19650.1	5.2e-31	57.58	Mitochondrial transcription termination factor family protein	[more]
AT5G06810.1	9.9e-30	44.44	Mitochondrial transcription termination factor family protein	[more]
AT3G60400.1	2.4e-15	34.23	Mitochondrial transcription termination factor family protein	[more]
AT5G45113.1	1.1e-04	60.00	mitochondrial transcription termination factor-related / mTERF-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..43
None	No IPR available	PANTHER	PTHR13068:SF38	TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN	coord: 49..155
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 49..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g12390.1	Cp4.1LG10g12390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0032502	developmental process
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003690	double-stranded DNA binding