Cp4.1LG10g11580 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g11580
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	exosome complex component RRP43
Location	Cp4.1LG10: 8841241 .. 8844781 (-)
RNA-Seq Expression	Cp4.1LG10g11580
Synteny	Cp4.1LG10g11580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCCTCTCCTCCGTCATAGCAACGGGCAGTCTTTTCATTCTTCATTTTTTTTGAACCGTCATACCTTTCTTGCACTCATCCCTCCGATTACCAGCTACTGCACCCCAACCCGCACGCCGCTGTCTCAGCCGCCTGATAAGCTCGCCGCTGCTACCTCCGTCTCACGCTCTCTCGTCTCTTTGCGCAATCAGCGCTACTTATAGGCTTCAGCCCCTAACCCGCGCCACTGGTGAGATCTCTGTCAGCCTCTCTGTCTAAGGATTTGAGTTTTTGTTTGTTTTTTTTTTCTATTTTGTTTCTTTGATTGATTCTGTTCGTCCACGAAGGATAAGTTCTAAAGAAGCATTTAATTTTGTTGATTTCTTCTTCAACAAATGTTCAATCTATCCGGAGGAAAACATAAAATCAAAATGCGTCAGGAGTTTGCTTGAATGGTTCTGAGTTTTGTTGAATATAGAAAGGAAATTATCTATGCTAATGAACTGGTGTAGGGAGGCTTAAATTTATTGCTCGAATATAGAAGAAACGGTCTCCAATGGCGGTAGAATTCTAATTTTAAAAATCTTTCCAAATCCTCGACCGATTTGGAATGGAGTTTTTTTTTAAAGCTAGATTTCTAATCAAAACTGGTTTCCAATTTCTGAGAAACAGATAAGAGTACAAACAATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCGGAAATGGAGGTTGATGCTTTTAGACGACTCTTTCCCATTCAGTTTTTTGAGCGTCATCTCGCTGAATCAATACGTCCTGATGGAAGAGCACTGGGAAAAGCTAGGGATACAACCATTGCTCTTGGTTAGTTGTAAGCTTGGATTTTCAGAAAATTGCCATTTCTTACCATTTCCAGCTTTTGTTTATAATCTTGAGTTTGCTTGATTGATTTTGACTCTCAAAACTGAATTTGGGTATCGTCTATTCATTTAAGGACCAGTATCATCTGCGAACGGATCAGCCCTGGCTAAGGTTGGTTCTACGGTAAGTGCCTTCACATTTAACCTTTTCATATGTGCTGGGATTTTGTGACGGTTTATTCTTAAGTTTATATAGTGCAGACAATGTTGGCTGCTATTAAAATGGAGGTAATGACGCCTTCCATAGAGTCACCGGATGAGGGTTGCATAGGTTGGTCATTGTCAACAGCTAGATATTTTTGCTCCTTGTTTATCATAATCCTTATGATAACATGCTATACATCTTTGTGATATTGGGTCTATCTTTTTCCAGCTGTTGATTTCCACATGCCTCCCATATGCTCTCCAATTGTTAGGCCCGGGAGACCAGCTGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCAAGGTACTATTTCACATTTCTTGCAGTTCTACTTCGATCTATTGCAATTTGCAGATGATATTTTTCTATTAAGTGTGGATGGAAATCAAGCTTTAAAAAGTATTTTGAATGCTATTGAAATGTTTGAGATGCCTTTGCTCACTTTAAATATGAAGGGTCTCAATAATCTTAGTTAAACACAGCAGCAGGATTTATACAAGGAATCGTGGCAAGTCTTGAGGCAGTTTCAAACATGATCTACACTACAAGATTCAGGCTAGTGGGAAAATTATAACAGAAGAACTAACCCCACTAACTCAGAAAATAATAAATTCAATGAACAAATATAAAGCACAAGGCTGGACGATGAATGCTGTCTTTGCAGTTAATTGAACGACACTGAAGTCTGATCTGATGAAGCTAGTGTAACGGTACCATTTGGGCTGAGATTCTAACATTCTCCTGTGGAGTGGGCGCATGGAGCAAACTTGGAAATGCCTCTTTGGGGAATCTGACTTTTAAGGACTCCTGGAAATGAATCATAGATAAATTCAGGTGCAATAATTCAAAATGGAAGAATTTACTTCTCTCTTGGTGTGGAATATTATCTCTTGTTCAATCGGTACCCTCTATTATTCCCCAATATCATGTTTTTCTTTTCAGAATGCCTTCCAAGATTGCTGATATTCTATAAAAGATCATCAGAGACTTTTTAGACAGCAGTGACAGGGTAAAGGAAAACATTTGGTAAATTGGAAAATAACTTGCCTCCCTTTTGCCCCTGGTGACTCGTGGATTTGAAACTAGAGAAGTAGAAATATTTACCTCATGACTAAGTGCCTTTGTAGATTTCCTAAAGAGAGGGAGGCTCTTTGGACAGTATAAAATTGTGATGAGAGACTATGACCCCTTCATAATTGGGGTTGGAGAGAAAGTGATTAAGAAAGAAGCCCATGGGTTAGCATGTATAAACTATAAAAACATCTCTCATGCTGTTTACTAAATAAACAAGGCTCTTTTGGGGAGCAAAATGACACACTTCGGAGCTCTGCTGGACCCCTCTCGCCTTTATTCCTGCTAACAGCAAAGGCAAGACTCTTTTGCAAGGCTAGAATGGTGAACAAAACTATTGGTTACTCCACATTAAAGAGATGTTCAGAGACACTGAAGTAGAAGATCGGATCTCCCTTATGGATGTTTTGGTTCGTGTGGTTCTTAGGGAGGGGATGATATTTTGCAATGTTCTCTTGATGGGTCATTAAGCTACTTCACTTTTCATTTTTTTTTGGGAAAAAAAATTAATTTCAACCCTAAACTCTAAAAATTGTTCATGTATAATTTTCACGTGTAAACTACTTTAGGTTCATGATAAGTTCTCTCTCTTCATTTTAAATTTTCTTAAAGGACTTACCTATTGCAAACTATTCTGCTTGCGATATTGTGTTTCTCATTATTTTAGAAGTGATAGAAATCTGGCAAGAGGAATGCAATACACTTTTTTGATTTCTGCAATTTCCTTTAAATCTTTCTAACTAATCAAGAAACTGATGATGTGAATTCTTTAGTTCTGGGATGATTGATCTGAGGGAACTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCGTACTTGGTATGTATTTTAAAGTCATGCACTGTCAATGTATTTTTATGCTAGAAGCATCTTAGTATTTGAAGTGAGGTGCCTTTACTGATGTACCTGTATACTTTGCTTCTGAAATTTGTTCACTTGCATCATCCTTACTCTTATTGGACATTTTTTCTCTATAGCCTGATTTTTGGTCAGAATGCAGCTTTATTATTGTGGTTAATTATTTTAAATGAAATAGCAACTTGATATGCATTCCACAGGATATTTACTGTTTGGATGCCGATGGATCTCTATTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCACTGTGAGGTTTCAGGCTCTCAACTTGTTCATAACTTGATATATTTCTGCATAATTTTGTAGGTGTTATGGTTATGGCAGTAATGCTGGTTATAATGGGACATTTGTCCTCCACTAACATTAAGGATAGTTTTTCAGATCATAGATTGATACTTTCTGCTTTTAATCCTTTACATTTCAGATTTTTTCCCTCTTTAGATTTCGTTTGTTGTTATTAAAATCTATAGGGGGCATTAAGTAATCATGTCCTGAAGTAA

mRNA sequence

CCTCCTCTCCTCCGTCATAGCAACGGGCAGTCTTTTCATTCTTCATTTTTTTTGAACCGTCATACCTTTCTTGCACTCATCCCTCCGATTACCAGCTACTGCACCCCAACCCGCACGCCGCTGTCTCAGCCGCCTGATAAGCTCGCCGCTGCTACCTCCGTCTCACGCTCTCTCGTCTCTTTGCGCAATCAGCGCTACTTATAGGCTTCAGCCCCTAACCCGCGCCACTGATAAGAGTACAAACAATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCGGAAATGGAGGTTGATGCTTTTAGACGACTCTTTCCCATTCAGTTTTTTGAGCGTCATCTCGCTGAATCAATACGTCCTGATGGAAGAGCACTGGGAAAAGCTAGGGATACAACCATTGCTCTTGGACCAGTATCATCTGCGAACGGATCAGCCCTGGCTAAGGTTGGTTCTACGACAATGTTGGCTGCTATTAAAATGGAGGTAATGACGCCTTCCATAGAGTCACCGGATGAGGGTTGCATAGCTGTTGATTTCCACATGCCTCCCATATGCTCTCCAATTGTTAGGCCCGGGAGACCAGCTGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCAAGTTCTGGGATGATTGATCTGAGGGAACTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCGTACTTGGATATTTACTGTTTGGATGCCGATGGATCTCTATTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCACTGTGAGGGGGCATTAAGTAATCATGTCCTGAAGTAA

Coding sequence (CDS)

ATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCGGAAATGGAGGTTGATGCTTTTAGACGACTCTTTCCCATTCAGTTTTTTGAGCGTCATCTCGCTGAATCAATACGTCCTGATGGAAGAGCACTGGGAAAAGCTAGGGATACAACCATTGCTCTTGGACCAGTATCATCTGCGAACGGATCAGCCCTGGCTAAGGTTGGTTCTACGACAATGTTGGCTGCTATTAAAATGGAGGTAATGACGCCTTCCATAGAGTCACCGGATGAGGGTTGCATAGCTGTTGATTTCCACATGCCTCCCATATGCTCTCCAATTGTTAGGCCCGGGAGACCAGCTGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCAAGTTCTGGGATGATTGATCTGAGGGAACTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCGTACTTGGATATTTACTGTTTGGATGCCGATGGATCTCTATTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCACTGTGAGGGGGCATTAAGTAATCATGTCCTGAAGTAA

Protein sequence

MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEGALSNHVLK

Homology

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BLAST of Cp4.1LG10g11580 vs. ExPASy Swiss-Prot
Match: Q96B26 (Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.9e-31
Identity = 63/160 (39.38%), Postives = 102/160 (63.75%), Query Frame = 0


Query: 20  FRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKM 79
           F+ + P++++ R L E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 80  EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E   PS ++PD+G +  +  +PP+CS   R G P E A V S+ ++D I +S +I   +L
Sbjct: 65  EFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 180
            +  GK  W+ Y D+ CLD DG++ DA   +  AA  + +
Sbjct: 125 CISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQ 164

[Close]

BLAST of Cp4.1LG10g11580 vs. ExPASy Swiss-Prot
Match: Q9D753 (Exosome complex component RRP43 OS=Mus musculus OX=10090 GN=Exosc8 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 7.7e-31
Identity = 62/160 (38.75%), Postives = 102/160 (63.75%), Query Frame = 0


Query: 20  FRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKM 79
           F+ + P++++ R L E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 80  EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E   P +++PD G +  +  +PP+CS   R G P E A V S+ ++D + +S +I   +L
Sbjct: 65  EFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDL 124

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 180
            +  GK AW+ Y D+ CLD DG++ DA   +  AA  + +
Sbjct: 125 CISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQ 164

[Close]

BLAST of Cp4.1LG10g11580 vs. ExPASy Swiss-Prot
Match: Q2KHU3 (Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 9.4e-29
Identity = 61/160 (38.12%), Postives = 100/160 (62.50%), Query Frame = 0


Query: 20  FRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKM 79
           F+ + P++++ R L E+ RPDGR LG+ R TT+ +G + +A+GSAL K+G+TT++  IK 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKA 64

Query: 80  EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E   P  ++PD+G +  +  + P+CS   R G P E A V S+ ++D I +S +I   +L
Sbjct: 65  EFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 180
            +  GK AW+ Y D+ CL+ DG++ DA   +  AA  + +
Sbjct: 125 CISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQ 164

[Close]

BLAST of Cp4.1LG10g11580 vs. ExPASy Swiss-Prot
Match: Q10205 (Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp43 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.8e-25
Identity = 58/155 (37.42%), Postives = 93/155 (60.00%), Query Frame = 0


Query: 20  FRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKM 79
           F+++ P Q+    L + +R DGR++ + R+  I    +S+ANGSA+ + G    +  IK 
Sbjct: 17  FKKITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKA 76

Query: 80  EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E+  P   SP+EG I  +  + P+CS   +PG P++ A V+S++L  T+  S +I+L+ L
Sbjct: 77  EIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSL 136

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAA 175
            + + KAAW+ Y DI CL+ DGS FD A  +  AA
Sbjct: 137 CIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAA 171

[Close]

BLAST of Cp4.1LG10g11580 vs. ExPASy Swiss-Prot
Match: Q8TYC2 (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) OX=190192 GN=rrp42 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.7e-22
Identity = 56/142 (39.44%), Postives = 88/142 (61.97%), Query Frame = 0


Query: 38  RPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVD 97
           R DGR   + R   +  G +S ANGSAL ++G+T ++  +K+EV  P  +SP+EG +AV+
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVN 82

Query: 98  FHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCL 157
             + P+  P   PG P E A  +S+ +   I  S MIDL EL + +G+  W+ ++DI+ L
Sbjct: 83  AELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTFVDIHVL 142

Query: 158 DADGSLFDAALLSAAAAFSHCE 180
           D DG+LFDA+++ + +A S  E
Sbjct: 143 DHDGNLFDASMIGSVSALSITE 164

[Close]

BLAST of Cp4.1LG10g11580 vs. NCBI nr
Match: TYK02487.1 (exosome complex component RRP43 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 340 bits (871), Expect = 7.88e-117
Identity = 173/183 (94.54%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSS+MEVDAFRRLFPIQF+ERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEG 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH  G
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHSSG 180

Query: 181 ALS 183
             S
Sbjct: 181 CRS 183

[Close]

BLAST of Cp4.1LG10g11580 vs. NCBI nr
Match: KAG7033523.1 (Exosome complex component RRP43 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 342 bits (878), Expect = 2.18e-116
Identity = 177/179 (98.88%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 179
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH +
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 179

[Close]

BLAST of Cp4.1LG10g11580 vs. NCBI nr
Match: XP_023544252.1 (exosome complex component RRP43 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 342 bits (878), Expect = 2.18e-116
Identity = 177/179 (98.88%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 179
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH +
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 179

[Close]

BLAST of Cp4.1LG10g11580 vs. NCBI nr
Match: XP_022928740.1 (exosome complex component RRP43 [Cucurbita moschata])

HSP 1 Score: 342 bits (878), Expect = 2.18e-116
Identity = 177/179 (98.88%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 179
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH +
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 179

[Close]

BLAST of Cp4.1LG10g11580 vs. NCBI nr
Match: XP_022967860.1 (exosome complex component RRP43 [Cucurbita maxima])

HSP 1 Score: 339 bits (870), Expect = 3.59e-115
Identity = 176/179 (98.32%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMP ICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPSICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 179
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH +
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 179

[Close]

BLAST of Cp4.1LG10g11580 vs. ExPASy TrEMBL
Match: A0A5D3BSR7 (Ribosomal RNA-processing protein 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold784G00110 PE=3 SV=1)

HSP 1 Score: 340 bits (871), Expect = 3.81e-117
Identity = 173/183 (94.54%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSS+MEVDAFRRLFPIQF+ERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEG 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH  G
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHSSG 180

Query: 181 ALS 183
             S
Sbjct: 181 CRS 183

[Close]

BLAST of Cp4.1LG10g11580 vs. ExPASy TrEMBL
Match: A0A6J1ESF5 (exosome complex component RRP43 OS=Cucurbita moschata OX=3662 GN=LOC111435558 PE=4 SV=1)

HSP 1 Score: 342 bits (878), Expect = 1.05e-116
Identity = 177/179 (98.88%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 179
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH +
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 179

[Close]

BLAST of Cp4.1LG10g11580 vs. ExPASy TrEMBL
Match: A0A6J1HVL5 (exosome complex component RRP43 OS=Cucurbita maxima OX=3661 GN=LOC111467240 PE=4 SV=1)

HSP 1 Score: 339 bits (870), Expect = 1.74e-115
Identity = 176/179 (98.32%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMP ICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPSICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 179
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH +
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 179

[Close]

BLAST of Cp4.1LG10g11580 vs. ExPASy TrEMBL
Match: A0A5A7TJQ5 (Ribosomal RNA-processing protein 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00390 PE=3 SV=1)

HSP 1 Score: 340 bits (871), Expect = 2.41e-115
Identity = 173/183 (94.54%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSS+MEVDAFRRLFPIQF+ERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 121 MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 180

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 181 NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 240

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEG 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH  G
Sbjct: 241 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHSSG 300

Query: 181 ALS 183
             S
Sbjct: 301 CRS 303

[Close]

BLAST of Cp4.1LG10g11580 vs. ExPASy TrEMBL
Match: A0A6J1DFM7 (exosome complex component RRP43 OS=Momordica charantia OX=3673 GN=LOC111020008 PE=4 SV=1)

HSP 1 Score: 338 bits (867), Expect = 4.97e-115
Identity = 172/179 (96.09%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFP+QF+ERH AESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIA+DFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 179
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH +
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 179

[Close]

BLAST of Cp4.1LG10g11580 vs. TAIR 10
Match: AT1G60080.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 287.7 bits (735), Expect = 6.6e-78
Identity = 143/179 (79.89%), Postives = 165/179 (92.18%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MG+P+AA  DLS+EMEVDAFRR+FP++FFERHL+ES+RPDGR LGKARDT + LG VS+A
Sbjct: 1   MGIPDAAQ-DLSTEMEVDAFRRIFPLRFFERHLSESLRPDGRQLGKARDTIVNLGLVSTA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           +GSALAK+GSTTMLAAI+MEVMTPS +SPDEGCIA++FHMPPICSP VRPGRPAEAAPVI
Sbjct: 61  DGSALAKIGSTTMLAAIRMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 180
           SK+LSDTI SSGMIDL+EL LV GKAAWM YLDIYCLDADG+LFDAALL+A AAFS+ +
Sbjct: 121 SKRLSDTILSSGMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQ 178

[Close]

BLAST of Cp4.1LG10g11580 vs. TAIR 10
Match: AT3G07750.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-12
Identity = 49/155 (31.61%), Postives = 78/155 (50.32%), Query Frame = 0


Query: 28  FFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKMEVMTPSIE 87
           F +  +A+ +R DGR     R   +  G +  ANGSA  ++G T ++A++K E+  PS  
Sbjct: 10  FIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSL 69

Query: 88  SPDEGCIAVDFHMPPICSPIV--RPGR--PAEAAPVISKQLSDTISSSGM-IDLRELSLV 147
            PD+G +AV     P   P    R G    +E A  + + L    S +G  I+L  L + 
Sbjct: 70  QPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIK 129

Query: 148 KGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH 178
           +GK  W  Y+D   + +DG+L DA   +  AA ++
Sbjct: 130 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTN 164

[Close]

BLAST of Cp4.1LG10g11580 vs. TAIR 10
Match: AT3G07750.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-12
Identity = 49/155 (31.61%), Postives = 78/155 (50.32%), Query Frame = 0


Query: 28  FFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKMEVMTPSIE 87
           F +  +A+ +R DGR     R   +  G +  ANGSA  ++G T ++A++K E+  PS  
Sbjct: 10  FIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSL 69

Query: 88  SPDEGCIAVDFHMPPICSPIV--RPGR--PAEAAPVISKQLSDTISSSGM-IDLRELSLV 147
            PD+G +AV     P   P    R G    +E A  + + L    S +G  I+L  L + 
Sbjct: 70  QPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIK 129

Query: 148 KGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH 178
           +GK  W  Y+D   + +DG+L DA   +  AA ++
Sbjct: 130 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTN 164

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g11580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96B26	5.9e-31	39.38	Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1	[more]
Q9D753	7.7e-31	38.75	Exosome complex component RRP43 OS=Mus musculus OX=10090 GN=Exosc8 PE=1 SV=1	[more]
Q2KHU3	9.4e-29	38.13	Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1	[more]
Q10205	4.8e-25	37.42	Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q8TYC2	1.7e-22	39.44	Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324...	[more]

BLAST of Cp4.1LG10g11580 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK02487.1	7.88e-117	94.54	exosome complex component RRP43 isoform X1 [Cucumis melo var. makuwa]	[more]
KAG7033523.1	2.18e-116	98.88	Exosome complex component RRP43 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023544252.1	2.18e-116	98.88	exosome complex component RRP43 [Cucurbita pepo subsp. pepo]	[more]
XP_022928740.1	2.18e-116	98.88	exosome complex component RRP43 [Cucurbita moschata]	[more]
XP_022967860.1	3.59e-115	98.32	exosome complex component RRP43 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG10g11580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BSR7	3.81e-117	94.54	Ribosomal RNA-processing protein 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A6J1ESF5	1.05e-116	98.88	exosome complex component RRP43 OS=Cucurbita moschata OX=3662 GN=LOC111435558 PE...	[more]
A0A6J1HVL5	1.74e-115	98.32	exosome complex component RRP43 OS=Cucurbita maxima OX=3661 GN=LOC111467240 PE=4...	[more]
A0A5A7TJQ5	2.41e-115	94.54	Ribosomal RNA-processing protein 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A6J1DFM7	4.97e-115	96.09	exosome complex component RRP43 OS=Momordica charantia OX=3673 GN=LOC111020008 P...	[more]

BLAST of Cp4.1LG10g11580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60080.1	6.6e-78	79.89	3'-5'-exoribonuclease family protein	[more]
AT3G07750.1	2.8e-12	31.61	3'-5'-exoribonuclease family protein	[more]
AT3G07750.2	2.8e-12	31.61	3'-5'-exoribonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 48..177 e-value: 3.9E-21 score: 75.9
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 15..180 e-value: 6.2E-53 score: 182.0
IPR033196	Exosome complex component Rrp43	PANTHER	PTHR11097:SF9	EXOSOME COMPLEX COMPONENT RRP43	coord: 21..178
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 21..178
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 18..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g11580.1	Cp4.1LG10g11580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0071042	nuclear polyadenylation-dependent mRNA catabolic process
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0034473	U1 snRNA 3'-end processing
biological_process	GO:0034475	U4 snRNA 3'-end processing
biological_process	GO:0034476	U5 snRNA 3'-end processing
biological_process	GO:0006401	RNA catabolic process
biological_process	GO:0006396	RNA processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0000178	exosome (RNase complex)