Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCGCCAAAGCACCAAGCGACCAAGAGAATCATCAGCCGAACAATCTCCGCTGCCGGAGATCGGTAATGGAAAGAAGCAGCGCCTCCACGGCGGAAGTGACGACGCCAAGGAACCTCTTCCTAGAACATTCTTTGATTTCGATCTGTCGTTCGGCGTCTTCGATTTCCCCTGGTTGAAGGAGAGCCTGATTTATTCCGAATCCGAGGACTGGAAATTGGACGATGTTTTCTTCACCTCCTTTTACAATGGACTATCCACCGCCGATGCTACTACGATTGGGACGGAGTTGTCCTCGGGGCAATTGGTTTGGAGTAATCTGCCGGATCCTTGGGAGGCGGAATACGAGGCACAAGTGCCGCCGACGACGCTGGACGACGGCGGAGGAGGACAGGCAGGGGAGGGGATGGATTGTATCTGGAAGTCTCTGCTAAATCAACCGCTTCAACAAGGGAGTAGAGCGTTGTAG
mRNA sequence
ATGGACCGCCAAAGCACCAAGCGACCAAGAGAATCATCAGCCGAACAATCTCCGCTGCCGGAGATCGGTAATGGAAAGAAGCAGCGCCTCCACGGCGGAAGTGACGACGCCAAGGAACCTCTTCCTAGAACATTCTTTGATTTCGATCTGTCGTTCGGCGTCTTCGATTTCCCCTGGTTGAAGGAGAGCCTGATTTATTCCGAATCCGAGGACTGGAAATTGGACGATGTTTTCTTCACCTCCTTTTACAATGGACTATCCACCGCCGATGCTACTACGATTGGGACGGAGTTGTCCTCGGGGCAATTGGTTTGGAGTAATCTGCCGGATCCTTGGGAGGCGGAATACGAGGCACAAGTGCCGCCGACGACGCTGGACGACGGCGGAGGAGGACAGGCAGGGGAGGGGATGGATTGTATCTGGAAGTCTCTGCTAAATCAACCGCTTCAACAAGGGAGTAGAGCGTTGTAG
Coding sequence (CDS)
ATGGACCGCCAAAGCACCAAGCGACCAAGAGAATCATCAGCCGAACAATCTCCGCTGCCGGAGATCGGTAATGGAAAGAAGCAGCGCCTCCACGGCGGAAGTGACGACGCCAAGGAACCTCTTCCTAGAACATTCTTTGATTTCGATCTGTCGTTCGGCGTCTTCGATTTCCCCTGGTTGAAGGAGAGCCTGATTTATTCCGAATCCGAGGACTGGAAATTGGACGATGTTTTCTTCACCTCCTTTTACAATGGACTATCCACCGCCGATGCTACTACGATTGGGACGGAGTTGTCCTCGGGGCAATTGGTTTGGAGTAATCTGCCGGATCCTTGGGAGGCGGAATACGAGGCACAAGTGCCGCCGACGACGCTGGACGACGGCGGAGGAGGACAGGCAGGGGAGGGGATGGATTGTATCTGGAAGTCTCTGCTAAATCAACCGCTTCAACAAGGGAGTAGAGCGTTGTAG
Protein sequence
MDRQSTKRPRESSAEQSPLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDLSFGVFDFPWLKESLIYSESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPDPWEAEYEAQVPPTTLDDGGGGQAGEGMDCIWKSLLNQPLQQGSRAL
Homology
BLAST of Cp4.1LG10g10200 vs. NCBI nr
Match:
KAG6603846.1 (hypothetical protein SDJN03_04455, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 318 bits (814), Expect = 1.96e-109
Identity = 153/156 (98.08%), Postives = 154/156 (98.72%), Query Frame = 0
Query: 1 MDRQSTKRPRESSAEQSPLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDLSFGVFDFPWL 60
MDRQSTKRPRESSAEQS LPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDLSFGVFDFPWL
Sbjct: 1 MDRQSTKRPRESSAEQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDLSFGVFDFPWL 60
Query: 61 KESLIYSESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPDPWEAEYEAQV 120
KESLIYSESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPDPWEAEYEAQV
Sbjct: 61 KESLIYSESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPDPWEAEYEAQV 120
Query: 121 PPTTLDDGGGGQAGEGMDCIWKSLLNQPLQQGSRAL 156
PPTTLDDGGGGQAGEG+DCIW SLLNQPLQQGSRAL
Sbjct: 121 PPTTLDDGGGGQAGEGIDCIWSSLLNQPLQQGSRAL 156
BLAST of Cp4.1LG10g10200 vs. NCBI nr
Match:
XP_022977867.1 (uncharacterized protein LOC111478029 [Cucurbita maxima])
HSP 1 Score: 311 bits (797), Expect = 7.67e-107
Identity = 150/156 (96.15%), Postives = 153/156 (98.08%), Query Frame = 0
Query: 1 MDRQSTKRPRESSAEQSPLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDLSFGVFDFPWL 60
M+RQSTKRPRESSAEQS L EIGNGKKQRLHGGSDDAKEPLPRTF+DFDLSFGVFDFPWL
Sbjct: 1 MERQSTKRPRESSAEQSSLLEIGNGKKQRLHGGSDDAKEPLPRTFYDFDLSFGVFDFPWL 60
Query: 61 KESLIYSESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPDPWEAEYEAQV 120
KESLIYSESEDWKLDDVFFTSFYNGLSTADAT+IGTELSSGQLVWSNLPDPWEAEYEAQV
Sbjct: 61 KESLIYSESEDWKLDDVFFTSFYNGLSTADATSIGTELSSGQLVWSNLPDPWEAEYEAQV 120
Query: 121 PPTTLDDGGGGQAGEGMDCIWKSLLNQPLQQGSRAL 156
PPTTLDDGGGGQAGEGMDCIW SLLNQPLQQGSRAL
Sbjct: 121 PPTTLDDGGGGQAGEGMDCIWSSLLNQPLQQGSRAL 156
BLAST of Cp4.1LG10g10200 vs. NCBI nr
Match:
KGN49015.1 (hypothetical protein Csa_004415 [Cucumis sativus])
HSP 1 Score: 181 bits (460), Expect = 1.97e-55
Identity = 102/169 (60.36%), Postives = 118/169 (69.82%), Query Frame = 0
Query: 1 MDRQSTKRPRESSA---------EQSPLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDL- 60
M+R +TKRPRESS+ +QS LPEI N K+Q H D+A+E P T FDFDL
Sbjct: 1 MERHNTKRPRESSSLSSPPDGIYDQSSLPEIANVKRQHSH---DNAQESSPGTSFDFDLL 60
Query: 61 SFGVFDFPWLKESLIYSESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPD 120
SFGVFDFPWLK+ LIYS+S+DWK +DVFFTS YNG STAD I T L+ G LPD
Sbjct: 61 SFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASTAD---IATPLTIGTAFTEFLPD 120
Query: 121 PWEAEYEAQVPPT---TLDDGGGGQAGEGMDCIWKSLLNQPLQQGSRAL 156
PWE +YEAQ PP +LD GG Q GE MDCIW+S+LNQPLQQGS AL
Sbjct: 121 PWEKDYEAQAPPPPPPSLD--GGEQGGEAMDCIWRSVLNQPLQQGSSAL 161
BLAST of Cp4.1LG10g10200 vs. NCBI nr
Match:
KAG6594718.1 (hypothetical protein SDJN03_11271, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 167 bits (423), Expect = 9.34e-50
Identity = 97/172 (56.40%), Postives = 110/172 (63.95%), Query Frame = 0
Query: 1 MDRQSTKRPRESSA---------------EQSPLPEIGNGKKQRLHGGSDDAKEPLPRTF 60
MDR++ KRPRESS+ EQS PEIGNG+K++ G
Sbjct: 1 MDRRNAKRPRESSSSSSSSSSSSSAGVRNEQSSQPEIGNGEKRQHVEGFG--------RL 60
Query: 61 FDFDLSFGVFDFPWLKESLIYSESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVW 120
FD DLSFGVFDFPWLK+SLIYS+ EDWK++DVFFTSF +TAD TE S QLVW
Sbjct: 61 FDLDLSFGVFDFPWLKDSLIYSKYEDWKVEDVFFTSFDGVSTTADIAL--TEWSE-QLVW 120
Query: 121 SNLPDPWEAEYEAQVPPTTLD----DGGGGQAGEGMDCIWKSLLNQPLQQGS 153
NLPDPWE EYEA V P T + G G AGEGMDC+W SLLNQPLQQGS
Sbjct: 121 CNLPDPWEEEYEAHVAPATATATAVEDGEGPAGEGMDCVWNSLLNQPLQQGS 161
BLAST of Cp4.1LG10g10200 vs. NCBI nr
Match:
KAA0025593.1 (hypothetical protein E6C27_scaffold253G00830 [Cucumis melo var. makuwa] >TYK12468.1 hypothetical protein E5676_scaffold255G00440 [Cucumis melo var. makuwa])
HSP 1 Score: 157 bits (398), Expect = 2.94e-46
Identity = 87/147 (59.18%), Postives = 102/147 (69.39%), Query Frame = 0
Query: 15 EQSPLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDL-SFGVFDFPWLKESLIYSESEDWK 74
+QS PEI N K+Q H D + P T FDFDL SFGVFDFPWLK+ LIYS+S+DWK
Sbjct: 3 DQSSPPEIANVKRQHSHDA--DQEYSSPGTSFDFDLLSFGVFDFPWLKDGLIYSKSDDWK 62
Query: 75 LDDVFFTSFYNGLSTADATTIGTELSSGQLVWSN-LPDPWEAEYEAQV---PPTTLDDGG 134
+DVFFTS YNG S+ I T L+ G ++ LPDPWE +YEAQ PP +LD G
Sbjct: 63 FEDVFFTSVYNGASST--FDIATPLTIGTKAFTEFLPDPWEKDYEAQALPQPPPSLD--G 122
Query: 135 GGQAGEGMDCIWKSLLNQPLQQGSRAL 156
G Q GEGMDCIW+S+LNQPLQQGS AL
Sbjct: 123 GEQGGEGMDCIWRSVLNQPLQQGSSAL 143
BLAST of Cp4.1LG10g10200 vs. ExPASy TrEMBL
Match:
A0A6J1IJM6 (uncharacterized protein LOC111478029 OS=Cucurbita maxima OX=3661 GN=LOC111478029 PE=4 SV=1)
HSP 1 Score: 311 bits (797), Expect = 3.71e-107
Identity = 150/156 (96.15%), Postives = 153/156 (98.08%), Query Frame = 0
Query: 1 MDRQSTKRPRESSAEQSPLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDLSFGVFDFPWL 60
M+RQSTKRPRESSAEQS L EIGNGKKQRLHGGSDDAKEPLPRTF+DFDLSFGVFDFPWL
Sbjct: 1 MERQSTKRPRESSAEQSSLLEIGNGKKQRLHGGSDDAKEPLPRTFYDFDLSFGVFDFPWL 60
Query: 61 KESLIYSESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPDPWEAEYEAQV 120
KESLIYSESEDWKLDDVFFTSFYNGLSTADAT+IGTELSSGQLVWSNLPDPWEAEYEAQV
Sbjct: 61 KESLIYSESEDWKLDDVFFTSFYNGLSTADATSIGTELSSGQLVWSNLPDPWEAEYEAQV 120
Query: 121 PPTTLDDGGGGQAGEGMDCIWKSLLNQPLQQGSRAL 156
PPTTLDDGGGGQAGEGMDCIW SLLNQPLQQGSRAL
Sbjct: 121 PPTTLDDGGGGQAGEGMDCIWSSLLNQPLQQGSRAL 156
BLAST of Cp4.1LG10g10200 vs. ExPASy TrEMBL
Match:
A0A0A0KH39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510330 PE=4 SV=1)
HSP 1 Score: 181 bits (460), Expect = 9.53e-56
Identity = 102/169 (60.36%), Postives = 118/169 (69.82%), Query Frame = 0
Query: 1 MDRQSTKRPRESSA---------EQSPLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDL- 60
M+R +TKRPRESS+ +QS LPEI N K+Q H D+A+E P T FDFDL
Sbjct: 1 MERHNTKRPRESSSLSSPPDGIYDQSSLPEIANVKRQHSH---DNAQESSPGTSFDFDLL 60
Query: 61 SFGVFDFPWLKESLIYSESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPD 120
SFGVFDFPWLK+ LIYS+S+DWK +DVFFTS YNG STAD I T L+ G LPD
Sbjct: 61 SFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASTAD---IATPLTIGTAFTEFLPD 120
Query: 121 PWEAEYEAQVPPT---TLDDGGGGQAGEGMDCIWKSLLNQPLQQGSRAL 156
PWE +YEAQ PP +LD GG Q GE MDCIW+S+LNQPLQQGS AL
Sbjct: 121 PWEKDYEAQAPPPPPPSLD--GGEQGGEAMDCIWRSVLNQPLQQGSSAL 161
BLAST of Cp4.1LG10g10200 vs. ExPASy TrEMBL
Match:
A0A5A7SLQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00440 PE=4 SV=1)
HSP 1 Score: 157 bits (398), Expect = 1.42e-46
Identity = 87/147 (59.18%), Postives = 102/147 (69.39%), Query Frame = 0
Query: 15 EQSPLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDL-SFGVFDFPWLKESLIYSESEDWK 74
+QS PEI N K+Q H D + P T FDFDL SFGVFDFPWLK+ LIYS+S+DWK
Sbjct: 3 DQSSPPEIANVKRQHSHDA--DQEYSSPGTSFDFDLLSFGVFDFPWLKDGLIYSKSDDWK 62
Query: 75 LDDVFFTSFYNGLSTADATTIGTELSSGQLVWSN-LPDPWEAEYEAQV---PPTTLDDGG 134
+DVFFTS YNG S+ I T L+ G ++ LPDPWE +YEAQ PP +LD G
Sbjct: 63 FEDVFFTSVYNGASST--FDIATPLTIGTKAFTEFLPDPWEKDYEAQALPQPPPSLD--G 122
Query: 135 GGQAGEGMDCIWKSLLNQPLQQGSRAL 156
G Q GEGMDCIW+S+LNQPLQQGS AL
Sbjct: 123 GEQGGEGMDCIWRSVLNQPLQQGSSAL 143
BLAST of Cp4.1LG10g10200 vs. ExPASy TrEMBL
Match:
A0A6J1BUL5 (uncharacterized protein LOC111005508 OS=Momordica charantia OX=3673 GN=LOC111005508 PE=4 SV=1)
HSP 1 Score: 91.3 bits (225), Expect = 1.46e-20
Identity = 69/136 (50.74%), Postives = 78/136 (57.35%), Query Frame = 0
Query: 1 MDRQSTKRPRESSAEQ--------------SPLPEIGNGKKQRLHGGSDDAKEPLPRTFF 60
MDR +TKR RES + S PEIGN KKQ GG T
Sbjct: 1 MDRHNTKRARESLSASAASSDDAVSYERSYSSPPEIGNVKKQHTDGGGGQGA-----TGR 60
Query: 61 DFDLSFGVFDFPWLKESLIYSESEDWKLDDVFFTSF-YNGLSTADAT-TIGTELS--SGQ 115
DL VFDFPWLK+SLI S+SEDWK +DVFFTS NG STAD T TIGT + SGQ
Sbjct: 61 SSDLD--VFDFPWLKDSLI-SKSEDWKFEDVFFTSLDSNGASTADDTLTIGTAFTELSGQ 120
BLAST of Cp4.1LG10g10200 vs. ExPASy TrEMBL
Match:
A0A7N2LSF2 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)
HSP 1 Score: 77.8 bits (190), Expect = 5.01e-15
Identity = 50/130 (38.46%), Postives = 67/130 (51.54%), Query Frame = 0
Query: 30 LHGGSDDAKEPLPRTFFDFDLSFGVFDFPWLKESLIYSESEDWKLDDVFFTSFYNGLSTA 89
L+ +DD L GVFDFPWLK+ +I S+SEDWKL+D F +S Y+ ST
Sbjct: 38 LNDVNDDKDSEKTSCDSSLALDEGVFDFPWLKDGMI-SKSEDWKLEDTFSSSLYDTSSTN 97
Query: 90 DATTIGTELSSGQLVWS-------NLPDPWEAEYEAQVPPTTLDDGGGGQAGEGMDCIWK 149
+A E +GQ + N PD E +++ + DDG G CIW
Sbjct: 98 EAGI--DEFPAGQCLCQTPEPALLNKPDDHEEKFDDNLRRPQEDDGLG--------CIWT 156
Query: 150 SLLNQPLQQG 152
SLL++PLQQG
Sbjct: 158 SLLSEPLQQG 156
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6603846.1 | 1.96e-109 | 98.08 | hypothetical protein SDJN03_04455, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022977867.1 | 7.67e-107 | 96.15 | uncharacterized protein LOC111478029 [Cucurbita maxima] | [more] |
KGN49015.1 | 1.97e-55 | 60.36 | hypothetical protein Csa_004415 [Cucumis sativus] | [more] |
KAG6594718.1 | 9.34e-50 | 56.40 | hypothetical protein SDJN03_11271, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAA0025593.1 | 2.94e-46 | 59.18 | hypothetical protein E6C27_scaffold253G00830 [Cucumis melo var. makuwa] >TYK1246... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1IJM6 | 3.71e-107 | 96.15 | uncharacterized protein LOC111478029 OS=Cucurbita maxima OX=3661 GN=LOC111478029... | [more] |
A0A0A0KH39 | 9.53e-56 | 60.36 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510330 PE=4 SV=1 | [more] |
A0A5A7SLQ6 | 1.42e-46 | 59.18 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A6J1BUL5 | 1.46e-20 | 50.74 | uncharacterized protein LOC111005508 OS=Momordica charantia OX=3673 GN=LOC111005... | [more] |
A0A7N2LSF2 | 5.01e-15 | 38.46 | Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |