Cp4.1LG10g09170 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g09170
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	F-box protein
Location	Cp4.1LG10: 4652513 .. 4654172 (-)
RNA-Seq Expression	Cp4.1LG10g09170
Synteny	Cp4.1LG10g09170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACTCCGTAGTTTGCTGAGTTTCCATTTTAAGAGCAAAAACTTTCTTTGAAACTGAAACTGAATCAGAAAGAGAGAGAGAGAGAGAGAGCGAAATTCAAATCTCCACGGCCATCGACAATCAGGTTCGTTTCGCTCCAGATTCAAATTTGAATTTCTTCATTATTCGACACTAAATTTAGATTTCTTCCTTATTTGACACTTTCAATCTGCTTTTGGAAAACTATTCTTATAAAAAACGGATTCGGTTCGATAAGATATTTGTTAGGGTTCTTGAAGCTCTTTGAATCTCGTAGTTTATAGATTCGGTTCTATTTTCTTTTAGGATTTTATCAGTTCTAAATGATTTATGTTCGTTCTTTCCCGCGCGTTGATACAGATAAGCGGATAGATTTAAATTATTTGGAGTATCGAGAATTAACAATGGCGTTGGGAAAGAAGAGCGGTTGTTTGAAATCGAAAAGCGTCGTCTCTGCTGCTGCCGATAAAGAGCTGGATTTCGGAGTTGTGAGATATGCGCGTGGTTTAGGAAGGAAACGTGTTGTGATTTCTTGCAATCAGGAGGATTCGTCTATCGACTTGACGCCGAAGGCACCGTCGAAGAGGCGCTGCAGCGTCGTCGGTACGACGGTGGACGCCGACTGGTCTCTGCTTGAGGTTCTGCCTCAGGAGATTCTGGTTAGTACAATTACAAAGTTCTTGAGATTGAAATCGATTCGATATTGCACCTTTCAAATCCTTGCATTCGGTCCCTTTTTCGACTATTGTGTCTGAAATGCATTTTTCCCCCTTTCCCCTCTCCATTAGCTTAGGATACTCTGCGGTGTGGACCATGATGACTTGAAACAGCTAGTCCGCGTTTCGAAAACAATTAGCGAAGCGGTAAGCATCACTCGCATCATTCTTCACATTATTTGTTTCCTTCCATTTCTTTCATTGATTCTCATTGATTAAGGGTTTCAATTTCATTTACAGACTTTAATTGCCAAAGAATGGCATTTCGCTTATAGAACCCCCTCAAAGATCCGTGCATTTCGCACTTCCATTGAACTTGACGACAATTTCATCGATCTCGACGAGATTGAAGCCCCAGATGCTCCTCTCACAAGACGATTTAGGTCTCCATTAAGCAGAAAAAAGCTCGCGGACATTTCCGTGGCCTTGTTCGCCGAAGAAGAGCAATGGCCAAGGAAAAAGTACGCCATTGAGACAGAGATGTGAATTAAGCCAGAGGGCTCTGTAAATACATCTGTATTTTTGTTGTAGAAACACGGTGTGCTGGTAGGAAGAAAGACGTAGTTAGGGATCTGAGACATTTTCACTGACAAATTCTTCAAATCTTTCATTGAAGATGAAGATGAAGATGAAGATGGGTGTGTTAGGAATGCATCTCGTTCTTTTTGTACATGTATTACAGAGGCAGGCTGATAGGTAAATTCGTTTACAAGGGTAGCATTTTGGTTTAGTCCCTTTCAAATTCTGATAAATTCGAACAGTTCATTATACTGTTGCTCTCATTTGTTCTCTGTCTAATAAAAACGAAGCCCATTTTCCTCGGAACTTCGTGTCACCACTTAGCCTACGTTTCTGGTTTCCATATGTATTGCTGGCTTTGATTCAATTTGAATAACTTCCCATCATTGGCAGATGGGATTGTGGGG

mRNA sequence

CAACTCCGTAGTTTGCTGAGTTTCCATTTTAAGAGCAAAAACTTTCTTTGAAACTGAAACTGAATCAGAAAGAGAGAGAGAGAGAGAGAGCGAAATTCAAATCTCCACGGCCATCGACAATCAGATAAGCGGATAGATTTAAATTATTTGGAGTATCGAGAATTAACAATGGCGTTGGGAAAGAAGAGCGGTTGTTTGAAATCGAAAAGCGTCGTCTCTGCTGCTGCCGATAAAGAGCTGGATTTCGGAGTTGTGAGATATGCGCGTGGTTTAGGAAGGAAACGTGTTGTGATTTCTTGCAATCAGGAGGATTCGTCTATCGACTTGACGCCGAAGGCACCGTCGAAGAGGCGCTGCAGCGTCGTCGGTACGACGGTGGACGCCGACTGGTCTCTGCTTGAGGTTCTGCCTCAGGAGATTCTGCTTAGGATACTCTGCGGTGTGGACCATGATGACTTGAAACAGCTAGTCCGCGTTTCGAAAACAATTAGCGAAGCGACTTTAATTGCCAAAGAATGGCATTTCGCTTATAGAACCCCCTCAAAGATCCGTGCATTTCGCACTTCCATTGAACTTGACGACAATTTCATCGATCTCGACGAGATTGAAGCCCCAGATGCTCCTCTCACAAGACGATTTAGGTCTCCATTAAGCAGAAAAAAGCTCGCGGACATTTCCGTGGCCTTGTTCGCCGAAGAAGAGCAATGGCCAAGGAAAAAGTACGCCATTGAGACAGAGATGTGAATTAAGCCAGAGGGCTCTGTAAATACATCTGTATTTTTGTTGTAGAAACACGGTGTGCTGGTAGGAAGAAAGACGTAGTTAGGGATCTGAGACATTTTCACTGACAAATTCTTCAAATCTTTCATTGAAGATGAAGATGAAGATGAAGATGGGTGTGTTAGGAATGCATCTCGTTCTTTTTGTACATGTATTACAGAGGCAGGCTGATAGGTAAATTCGTTTACAAGGGTAGCATTTTGGTTTAGTCCCTTTCAAATTCTGATAAATTCGAACAGTTCATTATACTGTTGCTCTCATTTGTTCTCTGTCTAATAAAAACGAAGCCCATTTTCCTCGGAACTTCGTGTCACCACTTAGCCTACGTTTCTGGTTTCCATATGTATTGCTGGCTTTGATTCAATTTGAATAACTTCCCATCATTGGCAGATGGGATTGTGGGG

Coding sequence (CDS)

ATGGCGTTGGGAAAGAAGAGCGGTTGTTTGAAATCGAAAAGCGTCGTCTCTGCTGCTGCCGATAAAGAGCTGGATTTCGGAGTTGTGAGATATGCGCGTGGTTTAGGAAGGAAACGTGTTGTGATTTCTTGCAATCAGGAGGATTCGTCTATCGACTTGACGCCGAAGGCACCGTCGAAGAGGCGCTGCAGCGTCGTCGGTACGACGGTGGACGCCGACTGGTCTCTGCTTGAGGTTCTGCCTCAGGAGATTCTGCTTAGGATACTCTGCGGTGTGGACCATGATGACTTGAAACAGCTAGTCCGCGTTTCGAAAACAATTAGCGAAGCGACTTTAATTGCCAAAGAATGGCATTTCGCTTATAGAACCCCCTCAAAGATCCGTGCATTTCGCACTTCCATTGAACTTGACGACAATTTCATCGATCTCGACGAGATTGAAGCCCCAGATGCTCCTCTCACAAGACGATTTAGGTCTCCATTAAGCAGAAAAAAGCTCGCGGACATTTCCGTGGCCTTGTTCGCCGAAGAAGAGCAATGGCCAAGGAAAAAGTACGCCATTGAGACAGAGATGTGA

Protein sequence

MALGKKSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKAPSKRRCSVVGTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFAYRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPLTRRFRSPLSRKKLADISVALFAEEEQWPRKKYAIETEM

Homology

[Close]

BLAST of Cp4.1LG10g09170 vs. ExPASy Swiss-Prot
Match: O65416 (F-box protein SKIP27 OS=Arabidopsis thaliana OX=3702 GN=SKIP27 PE=1 SV=2)

HSP 1 Score: 128.3 bits (321), Expect = 9.6e-29
Identity = 79/192 (41.15%), Postives = 118/192 (61.46%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAAADK-ELDFGVVRYARGLGRKRVVI-SCNQEDSS-----IDL 60
           MAL K+   + S +      ++ EL  G VR+ RGLGRKR++I SC +E  S     I +
Sbjct: 34  MALSKRGFVMTSNARFHGEEEELELGLGSVRFTRGLGRKRILISSCVRESLSRSAVEIPV 93

Query: 61  TPKAP--------SKRRCSVVGTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSK 120
             ++P         + R ++V ++  ++ S LE LPQ++L+R++CGVDH+DLK L  VSK
Sbjct: 94  VSESPPVKSSLKRQRSRITIVSSS-SSEKSRLECLPQDLLIRVICGVDHEDLKSLKLVSK 153

Query: 121 TISEATLIAKEWHFAYRTPSKIRAFRTSIELD---DNFIDLDEIEAPDAPLTRRFRSPLS 175
           +I EA+L+AK  HFAY TP K RAFR SI+L+   D+    D+IE P+AP   R+     
Sbjct: 154 SIREASLVAKTLHFAYTTPKKTRAFRNSIDLEEVSDSRHQEDDIEPPNAPRHYRWTKAKR 213

[Close]

BLAST of Cp4.1LG10g09170 vs. ExPASy Swiss-Prot
Match: Q8GX77 (F-box protein At1g61340 OS=Arabidopsis thaliana OX=3702 GN=At1g61340 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.4e-25
Identity = 84/191 (43.98%), Postives = 112/191 (58.64%), Query Frame = 0


Query: 1   MALGK------KSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQE-DSSIDL 60
           MALGK      K    + + V +      L+F  V+Y RG GRKR++IS   E + SI  
Sbjct: 1   MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEF--VQYKRGFGRKRILISSGDEMEDSIFT 60

Query: 61  TPKAPSKRRCSVVGTTVDADWSL-LEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATL 120
           +P    K+ C    T+V    S  LE LP +IL+RI+CGV+H+DLKQL  VSKTI EAT+
Sbjct: 61  SP--VGKKLCDDKTTSVAEGQSRELEDLPLDILVRIICGVEHEDLKQLFHVSKTIREATM 120

Query: 121 IAKEWHFAYRTPSKIRAFR-------TSIELDDNFIDLDEIEAPDAPLTRRFR-SPLSRK 175
           IAK+ HFAY TP K   F           +++D   D +EIEAP APL +R+R S ++R 
Sbjct: 121 IAKQSHFAYSTPRKTSVFHHGRFGWDKPFDVED---DDEEIEAPGAPLQKRYRLSRINRN 180

[Close]

BLAST of Cp4.1LG10g09170 vs. ExPASy Swiss-Prot
Match: Q9S9T6 (F-box protein At4g05010 OS=Arabidopsis thaliana OX=3702 GN=At4g05010 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.1e-22
Identity = 69/158 (43.67%), Postives = 94/158 (59.49%), Query Frame = 0


Query: 22  KELDFGVVRYARGLGRKRVVISCNQEDSSIDLTP-KAPSKRRCSVVGTTVDADWSLLEVL 81
           + L  G VR+ RGLGRKR++IS    ++  D  P K PS         T ++  SLLE L
Sbjct: 17  ERLGLGFVRFTRGLGRKRILISKRAPEN--DSPPVKRPSHE-------TTESCRSLLETL 76

Query: 82  PQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFAYRTPSKIRAFRTSIELDDNF 141
            Q+IL+R+LC VDH+DL  L RVSKTI +A + AK+ HF Y TP K   FR +I + D+ 
Sbjct: 77  HQDILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKRLPFRDAILILDSN 136

Query: 142 IDL----DEIEAPDAPLTRRFRSPLSRKKLADISVALF 175
            +     DE+E P+AP+ RRF +      L+ IS+ LF
Sbjct: 137 SNSSSQDDEMEPPNAPIRRRFIN--RESDLSKISMVLF 163

[Close]

BLAST of Cp4.1LG10g09170 vs. ExPASy Swiss-Prot
Match: Q5XF11 (F-box protein At4g35930 OS=Arabidopsis thaliana OX=3702 GN=At4g35930 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-09
Identity = 45/145 (31.03%), Postives = 69/145 (47.59%), Query Frame = 0


Query: 54  TPKAPSKRRCSVVGTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLI 113
           TPK P    C           S LE LP ++L++I+C + HD LK +  VS+ I  AT++
Sbjct: 147 TPKTPQADPC--------VSESQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIRMATIL 206

Query: 114 AKEWHFAYRTPSKIR----AFRTSIEL--------DDNFIDLDEIEAPDAPLTRRFRSPL 173
           A+++HF Y TP + R       T + +        D N   +     P AP  +    P 
Sbjct: 207 ARQYHFNYTTPDRSRQEMLRVMTPVPINRWPFRRGDGNPTMVSSPHTPKAP--KHAPRPP 266

Query: 174 SRKKLAD---ISVALFAEEEQWPRK 184
           SR KLA+   I+  LF ++  +P +
Sbjct: 267 SRTKLAEMKQITAVLFQDQTPFPSR 281

[Close]

BLAST of Cp4.1LG10g09170 vs. NCBI nr
Match: XP_023544727.1 (F-box protein SKIP27-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 374 bits (961), Expect = 1.07e-130
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKAPSK 60
           MALGKKSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKAPSK
Sbjct: 1   MALGKKSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKAPSK 60

Query: 61  RRCSVVGTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFA 120
           RRCSVVGTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFA
Sbjct: 61  RRCSVVGTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFA 120

Query: 121 YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPLTRRFRSPLSRKKLADISVALFAEEEQW 180
           YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPLTRRFRSPLSRKKLADISVALFAEEEQW
Sbjct: 121 YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPLTRRFRSPLSRKKLADISVALFAEEEQW 180

Query: 181 PRKKYAIETEM 191
           PRKKYAIETEM
Sbjct: 181 PRKKYAIETEM 191

[Close]

BLAST of Cp4.1LG10g09170 vs. NCBI nr
Match: XP_022950447.1 (F-box protein SKIP27-like [Cucurbita moschata] >KAG6603722.1 F-box protein SKIP27, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033902.1 F-box protein SKIP27, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 371 bits (952), Expect = 2.52e-129
Identity = 189/191 (98.95%), Postives = 190/191 (99.48%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKAPSK 60
           MALGKKSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKAPSK
Sbjct: 1   MALGKKSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKAPSK 60

Query: 61  RRCSVVGTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFA 120
           RRCSVV TTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFA
Sbjct: 61  RRCSVVSTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFA 120

Query: 121 YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPLTRRFRSPLSRKKLADISVALFAEEEQW 180
           YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAP+TRRFRSPLSRKKLADISVALFAEEEQW
Sbjct: 121 YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPVTRRFRSPLSRKKLADISVALFAEEEQW 180

Query: 181 PRKKYAIETEM 191
           PRKKYAIETEM
Sbjct: 181 PRKKYAIETEM 191

[Close]

BLAST of Cp4.1LG10g09170 vs. NCBI nr
Match: XP_022977983.1 (F-box protein SKIP27-like [Cucurbita maxima])

HSP 1 Score: 360 bits (923), Expect = 6.43e-125
Identity = 185/191 (96.86%), Postives = 187/191 (97.91%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKAPSK 60
           MALGKKSGCLKSKSVVSAA DKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPK PSK
Sbjct: 1   MALGKKSGCLKSKSVVSAA-DKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKTPSK 60

Query: 61  RRCSVVGTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFA 120
           RRCSVV TTVDA WSLLEVLPQEIL+RILCG+DHDDLKQLVRVSKTISEATLIAKEWHFA
Sbjct: 61  RRCSVVSTTVDAGWSLLEVLPQEILIRILCGLDHDDLKQLVRVSKTISEATLIAKEWHFA 120

Query: 121 YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPLTRRFRSPLSRKKLADISVALFAEEEQW 180
           YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPLTRRFRSPLSRKKLADISVALFAEEEQW
Sbjct: 121 YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPLTRRFRSPLSRKKLADISVALFAEEEQW 180

Query: 181 PRKKYAIETEM 191
           PRKKYAIETEM
Sbjct: 181 PRKKYAIETEM 190

[Close]

BLAST of Cp4.1LG10g09170 vs. NCBI nr
Match: XP_008439907.1 (PREDICTED: F-box protein At4g05010-like [Cucumis melo] >KAA0052721.1 F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 294 bits (752), Expect = 7.39e-99
Identity = 156/192 (81.25%), Postives = 174/192 (90.62%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKAPSK 60
           MALGKK+GCLKSKSVVSAA DK LDFGVVRY RGLGRKRVVISCN+EDSSIDLTPKAPSK
Sbjct: 1   MALGKKTGCLKSKSVVSAA-DKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSK 60

Query: 61  RRCSVVGTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFA 120
           RRC+VV T V+AD SLLE LPQEIL+R+LCGV+HDDLKQL+RVSKTISEATLIAK+ HFA
Sbjct: 61  RRCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFA 120

Query: 121 YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPLTRRFRSPLSRKKLADISVALFAEEE-Q 180
           Y TPSK+RAFRT+IEL+D+  D DEIEAP+A  TRRFRSPL+RKKLA+ISVALFAEEE +
Sbjct: 121 YSTPSKVRAFRTAIELNDSS-DFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDE 180

Query: 181 WPRKKYAIETEM 191
           WP+KK  I TEM
Sbjct: 181 WPKKKLPIWTEM 190

[Close]

BLAST of Cp4.1LG10g09170 vs. NCBI nr
Match: TYK13104.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 294 bits (752), Expect = 7.39e-99
Identity = 156/192 (81.25%), Postives = 173/192 (90.10%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKAPSK 60
           MALGKK+GCLKSKSVVSAA DK LDFGVVRY RGLGRKRVVISCN+EDSSIDLTPKAPSK
Sbjct: 1   MALGKKTGCLKSKSVVSAA-DKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSK 60

Query: 61  RRCSVVGTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFA 120
           R C+VV T V+AD SLLE LPQEIL+R+LCGV+HDDLKQL+RVSKTISEATLIAK+ HFA
Sbjct: 61  RHCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFA 120

Query: 121 YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPLTRRFRSPLSRKKLADISVALFAEEE-Q 180
           Y TPSK+RAFRT+IELDD+  D DEIEAP+A  TRRFRSPL+RKKLA+ISVALFAEEE +
Sbjct: 121 YSTPSKVRAFRTAIELDDSS-DFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDE 180

Query: 181 WPRKKYAIETEM 191
           WP+KK  I TEM
Sbjct: 181 WPKKKLPIWTEM 190

[Close]

BLAST of Cp4.1LG10g09170 vs. ExPASy TrEMBL
Match: A0A6J1GEU1 (F-box protein SKIP27-like OS=Cucurbita moschata OX=3662 GN=LOC111453544 PE=4 SV=1)

HSP 1 Score: 371 bits (952), Expect = 1.22e-129
Identity = 189/191 (98.95%), Postives = 190/191 (99.48%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKAPSK 60
           MALGKKSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKAPSK
Sbjct: 1   MALGKKSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKAPSK 60

Query: 61  RRCSVVGTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFA 120
           RRCSVV TTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFA
Sbjct: 61  RRCSVVSTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFA 120

Query: 121 YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPLTRRFRSPLSRKKLADISVALFAEEEQW 180
           YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAP+TRRFRSPLSRKKLADISVALFAEEEQW
Sbjct: 121 YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPVTRRFRSPLSRKKLADISVALFAEEEQW 180

Query: 181 PRKKYAIETEM 191
           PRKKYAIETEM
Sbjct: 181 PRKKYAIETEM 191

[Close]

BLAST of Cp4.1LG10g09170 vs. ExPASy TrEMBL
Match: A0A6J1IRQ4 (F-box protein SKIP27-like OS=Cucurbita maxima OX=3661 GN=LOC111478110 PE=4 SV=1)

HSP 1 Score: 360 bits (923), Expect = 3.11e-125
Identity = 185/191 (96.86%), Postives = 187/191 (97.91%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKAPSK 60
           MALGKKSGCLKSKSVVSAA DKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPK PSK
Sbjct: 1   MALGKKSGCLKSKSVVSAA-DKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKTPSK 60

Query: 61  RRCSVVGTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFA 120
           RRCSVV TTVDA WSLLEVLPQEIL+RILCG+DHDDLKQLVRVSKTISEATLIAKEWHFA
Sbjct: 61  RRCSVVSTTVDAGWSLLEVLPQEILIRILCGLDHDDLKQLVRVSKTISEATLIAKEWHFA 120

Query: 121 YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPLTRRFRSPLSRKKLADISVALFAEEEQW 180
           YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPLTRRFRSPLSRKKLADISVALFAEEEQW
Sbjct: 121 YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPLTRRFRSPLSRKKLADISVALFAEEEQW 180

Query: 181 PRKKYAIETEM 191
           PRKKYAIETEM
Sbjct: 181 PRKKYAIETEM 190

[Close]

BLAST of Cp4.1LG10g09170 vs. ExPASy TrEMBL
Match: A0A5A7UGT0 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003340 PE=4 SV=1)

HSP 1 Score: 294 bits (752), Expect = 3.58e-99
Identity = 156/192 (81.25%), Postives = 174/192 (90.62%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKAPSK 60
           MALGKK+GCLKSKSVVSAA DK LDFGVVRY RGLGRKRVVISCN+EDSSIDLTPKAPSK
Sbjct: 1   MALGKKTGCLKSKSVVSAA-DKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSK 60

Query: 61  RRCSVVGTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFA 120
           RRC+VV T V+AD SLLE LPQEIL+R+LCGV+HDDLKQL+RVSKTISEATLIAK+ HFA
Sbjct: 61  RRCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFA 120

Query: 121 YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPLTRRFRSPLSRKKLADISVALFAEEE-Q 180
           Y TPSK+RAFRT+IEL+D+  D DEIEAP+A  TRRFRSPL+RKKLA+ISVALFAEEE +
Sbjct: 121 YSTPSKVRAFRTAIELNDSS-DFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDE 180

Query: 181 WPRKKYAIETEM 191
           WP+KK  I TEM
Sbjct: 181 WPKKKLPIWTEM 190

[Close]

BLAST of Cp4.1LG10g09170 vs. ExPASy TrEMBL
Match: A0A5D3CPZ7 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007130 PE=4 SV=1)

HSP 1 Score: 294 bits (752), Expect = 3.58e-99
Identity = 156/192 (81.25%), Postives = 173/192 (90.10%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKAPSK 60
           MALGKK+GCLKSKSVVSAA DK LDFGVVRY RGLGRKRVVISCN+EDSSIDLTPKAPSK
Sbjct: 1   MALGKKTGCLKSKSVVSAA-DKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSK 60

Query: 61  RRCSVVGTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFA 120
           R C+VV T V+AD SLLE LPQEIL+R+LCGV+HDDLKQL+RVSKTISEATLIAK+ HFA
Sbjct: 61  RHCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFA 120

Query: 121 YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPLTRRFRSPLSRKKLADISVALFAEEE-Q 180
           Y TPSK+RAFRT+IELDD+  D DEIEAP+A  TRRFRSPL+RKKLA+ISVALFAEEE +
Sbjct: 121 YSTPSKVRAFRTAIELDDSS-DFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDE 180

Query: 181 WPRKKYAIETEM 191
           WP+KK  I TEM
Sbjct: 181 WPKKKLPIWTEM 190

[Close]

BLAST of Cp4.1LG10g09170 vs. ExPASy TrEMBL
Match: A0A1S3B0I0 (F-box protein At4g05010-like OS=Cucumis melo OX=3656 GN=LOC103484553 PE=4 SV=1)

HSP 1 Score: 294 bits (752), Expect = 3.58e-99
Identity = 156/192 (81.25%), Postives = 174/192 (90.62%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKAPSK 60
           MALGKK+GCLKSKSVVSAA DK LDFGVVRY RGLGRKRVVISCN+EDSSIDLTPKAPSK
Sbjct: 1   MALGKKTGCLKSKSVVSAA-DKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSK 60

Query: 61  RRCSVVGTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFA 120
           RRC+VV T V+AD SLLE LPQEIL+R+LCGV+HDDLKQL+RVSKTISEATLIAK+ HFA
Sbjct: 61  RRCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFA 120

Query: 121 YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPLTRRFRSPLSRKKLADISVALFAEEE-Q 180
           Y TPSK+RAFRT+IEL+D+  D DEIEAP+A  TRRFRSPL+RKKLA+ISVALFAEEE +
Sbjct: 121 YSTPSKVRAFRTAIELNDSS-DFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDE 180

Query: 181 WPRKKYAIETEM 191
           WP+KK  I TEM
Sbjct: 181 WPKKKLPIWTEM 190

[Close]

BLAST of Cp4.1LG10g09170 vs. TAIR 10
Match: AT4G21510.1 (F-box family protein )

HSP 1 Score: 128.3 bits (321), Expect = 6.8e-30
Identity = 79/192 (41.15%), Postives = 118/192 (61.46%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAAADK-ELDFGVVRYARGLGRKRVVI-SCNQEDSS-----IDL 60
           MAL K+   + S +      ++ EL  G VR+ RGLGRKR++I SC +E  S     I +
Sbjct: 34  MALSKRGFVMTSNARFHGEEEELELGLGSVRFTRGLGRKRILISSCVRESLSRSAVEIPV 93

Query: 61  TPKAP--------SKRRCSVVGTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSK 120
             ++P         + R ++V ++  ++ S LE LPQ++L+R++CGVDH+DLK L  VSK
Sbjct: 94  VSESPPVKSSLKRQRSRITIVSSS-SSEKSRLECLPQDLLIRVICGVDHEDLKSLKLVSK 153

Query: 121 TISEATLIAKEWHFAYRTPSKIRAFRTSIELD---DNFIDLDEIEAPDAPLTRRFRSPLS 175
           +I EA+L+AK  HFAY TP K RAFR SI+L+   D+    D+IE P+AP   R+     
Sbjct: 154 SIREASLVAKTLHFAYTTPKKTRAFRNSIDLEEVSDSRHQEDDIEPPNAPRHYRWTKAKR 213

[Close]

BLAST of Cp4.1LG10g09170 vs. TAIR 10
Match: AT1G61340.1 (F-box family protein )

HSP 1 Score: 115.2 bits (287), Expect = 6.0e-26
Identity = 84/191 (43.98%), Postives = 112/191 (58.64%), Query Frame = 0


Query: 1   MALGK------KSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQE-DSSIDL 60
           MALGK      K    + + V +      L+F  V+Y RG GRKR++IS   E + SI  
Sbjct: 1   MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEF--VQYKRGFGRKRILISSGDEMEDSIFT 60

Query: 61  TPKAPSKRRCSVVGTTVDADWSL-LEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATL 120
           +P    K+ C    T+V    S  LE LP +IL+RI+CGV+H+DLKQL  VSKTI EAT+
Sbjct: 61  SP--VGKKLCDDKTTSVAEGQSRELEDLPLDILVRIICGVEHEDLKQLFHVSKTIREATM 120

Query: 121 IAKEWHFAYRTPSKIRAFR-------TSIELDDNFIDLDEIEAPDAPLTRRFR-SPLSRK 175
           IAK+ HFAY TP K   F           +++D   D +EIEAP APL +R+R S ++R 
Sbjct: 121 IAKQSHFAYSTPRKTSVFHHGRFGWDKPFDVED---DDEEIEAPGAPLQKRYRLSRINRN 180

[Close]

BLAST of Cp4.1LG10g09170 vs. TAIR 10
Match: AT4G05010.1 (F-box family protein )

HSP 1 Score: 105.9 bits (263), Expect = 3.6e-23
Identity = 69/158 (43.67%), Postives = 94/158 (59.49%), Query Frame = 0


Query: 22  KELDFGVVRYARGLGRKRVVISCNQEDSSIDLTP-KAPSKRRCSVVGTTVDADWSLLEVL 81
           + L  G VR+ RGLGRKR++IS    ++  D  P K PS         T ++  SLLE L
Sbjct: 17  ERLGLGFVRFTRGLGRKRILISKRAPEN--DSPPVKRPSHE-------TTESCRSLLETL 76

Query: 82  PQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFAYRTPSKIRAFRTSIELDDNF 141
            Q+IL+R+LC VDH+DL  L RVSKTI +A + AK+ HF Y TP K   FR +I + D+ 
Sbjct: 77  HQDILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKRLPFRDAILILDSN 136

Query: 142 IDL----DEIEAPDAPLTRRFRSPLSRKKLADISVALF 175
            +     DE+E P+AP+ RRF +      L+ IS+ LF
Sbjct: 137 SNSSSQDDEMEPPNAPIRRRFIN--RESDLSKISMVLF 163

[Close]

BLAST of Cp4.1LG10g09170 vs. TAIR 10
Match: AT1G61340.2 (F-box family protein )

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-19
Identity = 85/237 (35.86%), Postives = 112/237 (47.26%), Query Frame = 0


Query: 1   MALGK------KSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQE-DSSIDL 60
           MALGK      K    + + V +      L+F  V+Y RG GRKR++IS   E + SI  
Sbjct: 1   MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEF--VQYKRGFGRKRILISSGDEMEDSIFT 60

Query: 61  TPKAPSKRRCSVVGTTVDADWSL-LEVLPQEILL-------------------------- 120
           +P    K+ C    T+V    S  LE LP +ILL                          
Sbjct: 61  SP--VGKKLCDDKTTSVAEGQSRELEDLPLDILLRVFVNSASVNQIELKVESFLFSEIQN 120

Query: 121 --------------------RILCGVDHDDLKQLVRVSKTISEATLIAKEWHFAYRTPSK 175
                               RI+CGV+H+DLKQL  VSKTI EAT+IAK+ HFAY TP K
Sbjct: 121 RNGNEKMFNFFHIWKTFVIVRIICGVEHEDLKQLFHVSKTIREATMIAKQSHFAYSTPRK 180

[Close]

BLAST of Cp4.1LG10g09170 vs. TAIR 10
Match: AT4G35930.1 (F-box family protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-10
Identity = 45/145 (31.03%), Postives = 69/145 (47.59%), Query Frame = 0


Query: 54  TPKAPSKRRCSVVGTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLI 113
           TPK P    C           S LE LP ++L++I+C + HD LK +  VS+ I  AT++
Sbjct: 147 TPKTPQADPC--------VSESQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIRMATIL 206

Query: 114 AKEWHFAYRTPSKIR----AFRTSIEL--------DDNFIDLDEIEAPDAPLTRRFRSPL 173
           A+++HF Y TP + R       T + +        D N   +     P AP  +    P 
Sbjct: 207 ARQYHFNYTTPDRSRQEMLRVMTPVPINRWPFRRGDGNPTMVSSPHTPKAP--KHAPRPP 266

Query: 174 SRKKLAD---ISVALFAEEEQWPRK 184
           SR KLA+   I+  LF ++  +P +
Sbjct: 267 SRTKLAEMKQITAVLFQDQTPFPSR 281

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g09170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65416	9.6e-29	41.15	F-box protein SKIP27 OS=Arabidopsis thaliana OX=3702 GN=SKIP27 PE=1 SV=2	[more]
Q8GX77	8.4e-25	43.98	F-box protein At1g61340 OS=Arabidopsis thaliana OX=3702 GN=At1g61340 PE=2 SV=1	[more]
Q9S9T6	5.1e-22	43.67	F-box protein At4g05010 OS=Arabidopsis thaliana OX=3702 GN=At4g05010 PE=2 SV=1	[more]
Q5XF11	3.8e-09	31.03	F-box protein At4g35930 OS=Arabidopsis thaliana OX=3702 GN=At4g35930 PE=2 SV=1	[more]

BLAST of Cp4.1LG10g09170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544727.1	1.07e-130	100.00	F-box protein SKIP27-like [Cucurbita pepo subsp. pepo]	[more]
XP_022950447.1	2.52e-129	98.95	F-box protein SKIP27-like [Cucurbita moschata] >KAG6603722.1 F-box protein SKIP2...	[more]
XP_022977983.1	6.43e-125	96.86	F-box protein SKIP27-like [Cucurbita maxima]	[more]
XP_008439907.1	7.39e-99	81.25	PREDICTED: F-box protein At4g05010-like [Cucumis melo] >KAA0052721.1 F-box prote...	[more]
TYK13104.1	7.39e-99	81.25	F-box protein [Cucumis melo var. makuwa]	[more]

BLAST of Cp4.1LG10g09170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GEU1	1.22e-129	98.95	F-box protein SKIP27-like OS=Cucurbita moschata OX=3662 GN=LOC111453544 PE=4 SV=...	[more]
A0A6J1IRQ4	3.11e-125	96.86	F-box protein SKIP27-like OS=Cucurbita maxima OX=3661 GN=LOC111478110 PE=4 SV=1	[more]
A0A5A7UGT0	3.58e-99	81.25	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003340...	[more]
A0A5D3CPZ7	3.58e-99	81.25	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007130...	[more]
A0A1S3B0I0	3.58e-99	81.25	F-box protein At4g05010-like OS=Cucumis melo OX=3656 GN=LOC103484553 PE=4 SV=1	[more]

BLAST of Cp4.1LG10g09170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21510.1	6.8e-30	41.15	F-box family protein	[more]
AT1G61340.1	6.0e-26	43.98	F-box family protein	[more]
AT4G05010.1	3.6e-23	43.67	F-box family protein	[more]
AT1G61340.2	1.1e-19	35.86	F-box family protein	[more]
AT4G35930.1	2.7e-10	31.03	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34049	F-BOX PROTEIN SKIP27	coord: 4..178
None	No IPR available	PANTHER	PTHR34049:SF1	F-BOX PROTEIN SKIP27	coord: 4..178
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 74..124 score: 9.100053
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 73..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g09170.1	Cp4.1LG10g09170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding