Cp4.1LG10g09020 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g09020
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG10: 4786017 .. 4786686 (-)
RNA-Seq Expression	Cp4.1LG10g09020
Synteny	Cp4.1LG10g09020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCTTTGCAAAGAGAAAAGGTAACTACAAGATATAGCACATAATCATTATATCTTTAACACAAAATCATCCTGGGGTATTGAACACCTATCTTCTACTATCACTTATTTCTTTGCAGCCAGTCTTGCAGTGATTTCCTTGTGCCTTACAGCTTCTGTACATCTGCTGGCCTCCTAGTGGAGTACTTAATCCTTCCAATAATTCTTTTCAACTTTGTATATGACATGTTAGAGCTTTCTGGTGTTCCTCCTGCAGGAAAAACCTCGAGCCCAAATTCGTCTTTCAAGAGTTCAGGTATTGCATCTCTCACCTCGAAGTTGTATTGAACTAAATCTGTTTCAATTTTACTGATTCTGCTGCAGCCAAGATGAAAATGTAACCATTCCTAAAGGGTAATGGGCGCAGCTATGTTCCTCTTTGTGAATTAGCATAGTAGTTCAGTACTATTTGTTTAAATCCATTAAAGCAAAGCTTGGAGTGGGAGAGAATAAGATCTATCCATACAAGTATGGTAGTAGACATATATTTTTTCTCAGGAATATGTCAATACCTTGTGCATAATTTTCCTTGATCATTCGCAGAACTGCAAGAACGTTTATTTGAGCTTCCACCTGATGAATACAGTAAATGCTTACTCTCATGCAGGTGGCTTGACTTGTATGAGTAG

mRNA sequence

ATGCTGCTTTGCAAAGAGAAAAGCCAGTCTTGCAGTGATTTCCTTGTGCCTTACAGCTTCTGTACATCTGCTGGCCTCCTAGTGGAGTACTTAATCCTTCCAATAATTCTTTTCAACTTTGTATATGACATGTTAGAGCTTTCTGGTGTTCCTCCTGCAGGAAAAACCTCGAGCCCAAATTCGTCTTTCAAGAGTTCAGAACTGCAAGAACGTTTATTTGAGCTTCCACCTGATGAATACAGTAAATGCTTACTCTCATGCAGGTGGCTTGACTTGTATGAGTAG

Coding sequence (CDS)

ATGCTGCTTTGCAAAGAGAAAAGCCAGTCTTGCAGTGATTTCCTTGTGCCTTACAGCTTCTGTACATCTGCTGGCCTCCTAGTGGAGTACTTAATCCTTCCAATAATTCTTTTCAACTTTGTATATGACATGTTAGAGCTTTCTGGTGTTCCTCCTGCAGGAAAAACCTCGAGCCCAAATTCGTCTTTCAAGAGTTCAGAACTGCAAGAACGTTTATTTGAGCTTCCACCTGATGAATACAGTAAATGCTTACTCTCATGCAGGTGGCTTGACTTGTATGAGTAG

Protein sequence

MLLCKEKSQSCSDFLVPYSFCTSAGLLVEYLILPIILFNFVYDMLELSGVPPAGKTSSPNSSFKSSELQERLFELPPDEYSKCLLSCRWLDLYE

Homology

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BLAST of Cp4.1LG10g09020 vs. NCBI nr
Match: KAG6603700.1 (Zinc finger CCCH domain-containing protein 21, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149 bits (375), Expect = 5.11e-41
Identity = 74/83 (89.16%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 6   EKSQSCSDFLVPYSFCTSAGLLVEYLILPIILFNFVYDMLELSGVPPAGKTSSPNSSFKS 65
           ++ +SCSDFLVP SFCTSAGLLVEYLILPII FNFVYDMLELS VPPAGKTSSPNSSFKS
Sbjct: 24  QREKSCSDFLVPCSFCTSAGLLVEYLILPIIPFNFVYDMLELSDVPPAGKTSSPNSSFKS 83

Query: 66  SELQERLFELPPDEYSKCLLSCR 88
            ELQERLFEL PDEYSKCLLSCR
Sbjct: 84  LELQERLFELQPDEYSKCLLSCR 106

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g09020 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG10g09020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603700.1	5.11e-41	89.16	Zinc finger CCCH domain-containing protein 21, partial [Cucurbita argyrosperma s...	[more]

BLAST of Cp4.1LG10g09020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG10g09020 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g09020.1	Cp4.1LG10g09020.1	mRNA