Cp4.1LG10g08830 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g08830
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG10: 4884815 .. 4886560 (-)
RNA-Seq ExpressionCp4.1LG10g08830
SyntenyCp4.1LG10g08830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTACAGAATCCTTCAAATCTTCTGAATTCTTAAGCTGATGATGATCTAAGCTCAATAATTTACAGTAGCTCTGTTGTGCTTGCCGCTAAACAATAGCGATTCGAGCTCGTCGGTCCGATCTCCAATCTTCCAAGTTCAGAACCCAGCCATATGATACCCATATGGAGAAGATCTTATGCTTCATCTTGTAGGCAATTGATCAAACTCAAAGCGGATGCCCATGGCGCCGTTGTTACTCCGGCTGAACAATCCAAGAAACCCCCATTTCCTCGCGGTGAATTGGATGCCCGCCAACTGTTCGACAAAATGCCTCAAATAAACGTGGTTTCTGCAACCGCTATGATTGGGCGCTGCGCAAGGCAGCATCAGCACGAAGAGGCGTTGGGTCTATTTTCTGCAATGTTTGTGTTAAATTTAAGGCCCAATGAGTTCACTTTTGGCACTGTGATTCACTCTGCTACGGCACTCCGGGACATTGATATTGGCAAGCAACTTCATGCTTGTGCCATAAAAATAGGCCTTCATTCTAATGTGTTTGTTGGTAGTGCGGCTTTGGATTTGTATGTCAAGTTGAGTGTCATTGAGGAAGCTCAAAGGGCTTTTGATGATATCAAGATGCCTAATGTGGTTTCTTACACTAGTTTGATTTCTGGGTACTTGAAAACCGAGAAGATTCAAGATGCGTTCCGGGTGTTCGATGAAATGCCCGAGCGAAACATCGTGTCCTGGAATGCGATGATTGGCGGGTTTAGCCGAAAGGGACACAATGAAGATGCCGTGCATCTCTTCATTGATATGCTCAGAGAAGGGTTTTTGCCCACTCAATCTACTTTTCCTTGTGCTTTATGTGCTGCTGCTAATATAGCTTCCATTGGAATAGGGAGGAGTTTTCATGCTTGTGGTATCAAGTTCTTGGGCGATCTCGACGTGTTCGTGAGCAATTCACTTATTAGTTTTTATGCAAAATGTGGAAGTATGGAAGATAGTTTGTTGGTTTTCAATAAATTGCTTGACAAAAGAAATACAGTTTCATGGAATGCTGTCCTTTGTGGTTATGCTCAAAATGGTAGGGGAAAGGAAGCCATAGATTTCTACCAGAGGATGAGTTTTTCAGGCTGCAAACCCAATGGAGTGACACTTCTTAGCTTGTTATGGGCTTGTAATCATGCTGGCCTAGTTGATGAAGGTTATTCATATTTCAATCAGGCGAAACTCGAGAACCCCAGCTTGTTAAAACCCGAGCATTATGCTTGTATGGTCGATTTGCTCTCACGTTCAGGTCAGTTTAGACAAGCAGAGGAGTTTATACGCGACCTACCTTTCGATCCAGGGATCGGGTTTTGGAAGGCATTGCTTGGGGGCTGCCAAATTCACTCGAATATGGAACTTGGGGAGCTTGCAGCTCAAAGAATCCTGGCCTTGGATCCAAGTGATGTCTCGTCGTATGTAATGATGTCGAACGTGCATTCAGCAGCCGGGAAATGGCATAGCGTGTCGATCTTAAGAAGGGAAATGAAGGAGAAGGGGATGAAGAGAATTCCGGGTTGCAGTTGGATTGAAATTAGGAGCAAAGTTCATGTCTTTGTAACTGGTGACAAAAATCACCACCAAAAGGATGAAATTTGTTCTACCTTGAAATTTTTTGTTGAACACTTGAAAGAGAGTGAAGATTTCAACTTTCTTTCAGATTCATAAATTGGATATGATTGGTATGAGGTTGACAAGAGTTATTGCAACTTGA

mRNA sequence

ATGGAGCAATTGATCAAACTCAAAGCGGATGCCCATGGCGCCGTTGTTACTCCGGCTGAACAATCCAAGAAACCCCCATTTCCTCGCGGTGAATTGGATGCCCGCCAACTGTTCGACAAAATGCCTCAAATAAACGTGGTTTCTGCAACCGCTATGATTGGGCGCTGCGCAAGGCAGCATCAGCACGAAGAGGCGTTGGGTCTATTTTCTGCAATGTTTGTGTTAAATTTAAGGCCCAATGAGTTCACTTTTGGCACTGTGATTCACTCTGCTACGGCACTCCGGGACATTGATATTGGCAAGCAACTTCATGCTTGTGCCATAAAAATAGGCCTTCATTCTAATGTGTTTGTTGGTAGTGCGGCTTTGGATTTGTATGTCAAGTTGAGTGTCATTGAGGAAGCTCAAAGGGCTTTTGATGATATCAAGATGCCTAATGTGGTTTCTTACACTAGTTTGATTTCTGGGTACTTGAAAACCGAGAAGATTCAAGATGCGTTCCGGGTGTTCGATGAAATGCCCGAGCGAAACATCGTGTCCTGGAATGCGATGATTGGCGGGTTTAGCCGAAAGGGACACAATGAAGATGCCGTGCATCTCTTCATTGATATGCTCAGAGAAGGGTTGACAAGAGTTATTGCAACTTGA

Coding sequence (CDS)

ATGGAGCAATTGATCAAACTCAAAGCGGATGCCCATGGCGCCGTTGTTACTCCGGCTGAACAATCCAAGAAACCCCCATTTCCTCGCGGTGAATTGGATGCCCGCCAACTGTTCGACAAAATGCCTCAAATAAACGTGGTTTCTGCAACCGCTATGATTGGGCGCTGCGCAAGGCAGCATCAGCACGAAGAGGCGTTGGGTCTATTTTCTGCAATGTTTGTGTTAAATTTAAGGCCCAATGAGTTCACTTTTGGCACTGTGATTCACTCTGCTACGGCACTCCGGGACATTGATATTGGCAAGCAACTTCATGCTTGTGCCATAAAAATAGGCCTTCATTCTAATGTGTTTGTTGGTAGTGCGGCTTTGGATTTGTATGTCAAGTTGAGTGTCATTGAGGAAGCTCAAAGGGCTTTTGATGATATCAAGATGCCTAATGTGGTTTCTTACACTAGTTTGATTTCTGGGTACTTGAAAACCGAGAAGATTCAAGATGCGTTCCGGGTGTTCGATGAAATGCCCGAGCGAAACATCGTGTCCTGGAATGCGATGATTGGCGGGTTTAGCCGAAAGGGACACAATGAAGATGCCGTGCATCTCTTCATTGATATGCTCAGAGAAGGGTTGACAAGAGTTATTGCAACTTGA

Protein sequence

MEQLIKLKADAHGAVVTPAEQSKKPPFPRGELDARQLFDKMPQINVVSATAMIGRCARQHQHEEALGLFSAMFVLNLRPNEFTFGTVIHSATALRDIDIGKQLHACAIKIGLHSNVFVGSAALDLYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQDAFRVFDEMPERNIVSWNAMIGGFSRKGHNEDAVHLFIDMLREGLTRVIAT
Homology
BLAST of Cp4.1LG10g08830 vs. ExPASy Swiss-Prot
Match: Q9FIH2 (Pentatricopeptide repeat-containing protein At5g42450, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E102 PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.8e-55
Identity = 100/177 (56.50%), Postives = 139/177 (78.53%), Query Frame = 0

Query: 33  DARQLFDKMPQINVVSATAMIGRCARQHQHEEALGLFSAMFVLNLRPNEFTFGTVIHSAT 92
           +A ++FD++P+++V+SATA+IGR  ++ +H EA   F  +  L +RPNEFTFGTVI S+T
Sbjct: 45  NAHKVFDEIPELDVISATAVIGRFVKESRHVEASQAFKRLLCLGIRPNEFTFGTVIGSST 104

Query: 93  ALRDIDIGKQLHACAIKIGLHSNVFVGSAALDLYVKLSVIEEAQRAFDDIKMPNVVSYTS 152
             RD+ +GKQLH  A+K+GL SNVFVGSA L+ YVKLS + +A+R FDD + PNVVS T+
Sbjct: 105 TSRDVKLGKQLHCYALKMGLASNVFVGSAVLNCYVKLSTLTDARRCFDDTRDPNVVSITN 164

Query: 153 LISGYLKTEKIQDAFRVFDEMPERNIVSWNAMIGGFSRKGHNEDAVHLFIDMLREGL 210
           LISGYLK  + ++A  +F  MPER++V+WNA+IGGFS+ G NE+AV+ F+DMLREG+
Sbjct: 165 LISGYLKKHEFEEALSLFRAMPERSVVTWNAVIGGFSQTGRNEEAVNTFVDMLREGV 221

BLAST of Cp4.1LG10g08830 vs. ExPASy Swiss-Prot
Match: Q9SIT7 (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E76 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.1e-28
Identity = 65/178 (36.52%), Postives = 109/178 (61.24%), Query Frame = 0

Query: 33  DARQLFDKMPQINVVSATAMIGRCARQHQHEEALGLFSAMFVLNLRPNEFTFGTVIHSAT 92
           DA+++FD+M   NVVS  ++I    +     EAL +F  M    + P+E T  +VI +  
Sbjct: 205 DAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACA 264

Query: 93  ALRDIDIGKQLHACAIKIG-LHSNVFVGSAALDLYVKLSVIEEAQRAFDDIKMPNVVSYT 152
           +L  I +G+++H   +K   L +++ + +A +D+Y K S I+EA+  FD + + NV++ T
Sbjct: 265 SLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAET 324

Query: 153 SLISGYLKTEKIQDAFRVFDEMPERNIVSWNAMIGGFSRKGHNEDAVHLFIDMLREGL 210
           S+ISGY      + A  +F +M ERN+VSWNA+I G+++ G NE+A+ LF  + RE +
Sbjct: 325 SMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESV 382

BLAST of Cp4.1LG10g08830 vs. ExPASy Swiss-Prot
Match: Q9LRV2 (Pentatricopeptide repeat-containing protein At3g26540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-A5 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.5e-27
Identity = 61/180 (33.89%), Postives = 108/180 (60.00%), Query Frame = 0

Query: 33  DARQLFDKMPQINVVSATAMIGRCARQHQHEEALGLFSAMFVLNLRPNEFTFGTVIHSAT 92
           DAR++FD++   + VS   ++ R      ++EA+ +F  M  LN+RP   T  +V+ + +
Sbjct: 215 DARRVFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACS 274

Query: 93  ALRDIDIGKQLHACAIKIGLHSNVFVGSAALDLYVKLSVIEEAQRAFDDIKMPNVVSYTS 152
               +++GK +HA A+K+ + ++  V ++  D+YVK   +E A+R FD  +  ++ S+TS
Sbjct: 275 RSLALEVGKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTS 334

Query: 153 LISGYLKTEKIQDAFRVFDEMPERNIVSWNAMIGGFSRKGHNEDAVHLFIDMLREGLTRV 212
            +SGY  +   ++A  +FD MPERNIVSWNAM+GG+    H  D    F+ ++R+ +  +
Sbjct: 335 AMSGYAMSGLTREARELFDLMPERNIVSWNAMLGGYVH-AHEWDEALDFLTLMRQEIENI 393

BLAST of Cp4.1LG10g08830 vs. ExPASy Swiss-Prot
Match: Q9M9R6 (Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana OX=3702 GN=PCMP-A4 PE=2 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 5.0e-26
Identity = 64/177 (36.16%), Postives = 106/177 (59.89%), Query Frame = 0

Query: 33  DARQLFDKMPQINVVSATAMIGRCARQHQHEEALGLFSAMFVLNLRPNEFTFGTVIHSAT 92
           +AR+ FD+MP+ +VVS  AM+   A+    E+AL LF+ M  L +RPNE T+  VI + +
Sbjct: 216 NARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDALRLFNDMLRLGVRPNETTWVIVISACS 275

Query: 93  ALRDIDIGKQLHACAIKIGLHSNVFVGSAALDLYVKLSVIEEAQRAFDDI-KMPNVVSYT 152
              D  + + L     +  +  N FV +A LD++ K   I+ A+R F+++    N+V++ 
Sbjct: 276 FRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKCRDIQSARRIFNELGTQRNLVTWN 335

Query: 153 SLISGYLKTEKIQDAFRVFDEMPERNIVSWNAMIGGFSRKGHNEDAVHLFIDMLREG 209
           ++ISGY +   +  A ++FD MP+RN+VSWN++I G++  G    A+  F DM+  G
Sbjct: 336 AMISGYTRIGDMSSARQLFDTMPKRNVVSWNSLIAGYAHNGQAALAIEFFEDMIDYG 392

BLAST of Cp4.1LG10g08830 vs. ExPASy Swiss-Prot
Match: Q9LIC3 (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H85 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.9e-25
Identity = 73/239 (30.54%), Postives = 108/239 (45.19%), Query Frame = 0

Query: 33  DARQLFDKMPQINVVSATAMIGRCARQHQHEEALGLFSAMFVLNLRPNEFTFGTVIHSAT 92
           DAR++ D+MP+ NVVS TAMI R ++     EAL +F+ M   + +PNEFTF TV+ S  
Sbjct: 105 DARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCI 164

Query: 93  ALRDIDIGKQLHACAIKIGLHSNVFVGSAALDLYVKLSVIEEAQRAFDDIKMPNVVSYTS 152
               + +GKQ+H   +K    S++FVGS+ LD+Y K   I+EA+  F+ +   +VVS T+
Sbjct: 165 RASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTA 224

Query: 153 LISGYL------------------------------------------------------ 202
           +I+GY                                                       
Sbjct: 225 IIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRE 284

BLAST of Cp4.1LG10g08830 vs. NCBI nr
Match: XP_023544385.1 (pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 412 bits (1058), Expect = 3.14e-140
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0

Query: 3   QLIKLKADAHGAVVTPAEQSKKPPFPRGELDARQLFDKMPQINVVSATAMIGRCARQHQH 62
           QLIKLKADAHGAVVTPAEQSKKPPFPRGELDARQLFDKMPQINVVSATAMIGRCARQHQH
Sbjct: 15  QLIKLKADAHGAVVTPAEQSKKPPFPRGELDARQLFDKMPQINVVSATAMIGRCARQHQH 74

Query: 63  EEALGLFSAMFVLNLRPNEFTFGTVIHSATALRDIDIGKQLHACAIKIGLHSNVFVGSAA 122
           EEALGLFSAMFVLNLRPNEFTFGTVIHSATALRDIDIGKQLHACAIKIGLHSNVFVGSAA
Sbjct: 75  EEALGLFSAMFVLNLRPNEFTFGTVIHSATALRDIDIGKQLHACAIKIGLHSNVFVGSAA 134

Query: 123 LDLYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQDAFRVFDEMPERNIVSWN 182
           LDLYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQDAFRVFDEMPERNIVSWN
Sbjct: 135 LDLYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQDAFRVFDEMPERNIVSWN 194

Query: 183 AMIGGFSRKGHNEDAVHLFIDMLREG 208
           AMIGGFSRKGHNEDAVHLFIDMLREG
Sbjct: 195 AMIGGFSRKGHNEDAVHLFIDMLREG 220

BLAST of Cp4.1LG10g08830 vs. NCBI nr
Match: KAG6603678.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 395 bits (1014), Expect = 1.50e-133
Identity = 197/206 (95.63%), Postives = 202/206 (98.06%), Query Frame = 0

Query: 3   QLIKLKADAHGAVVTPAEQSKKPPFPRGELDARQLFDKMPQINVVSATAMIGRCARQHQH 62
           QL+KLKADAHGAVVTPAEQSKK PFPRGELDARQLFDKMPQ+NVVSATAMIGRCARQHQH
Sbjct: 16  QLMKLKADAHGAVVTPAEQSKKAPFPRGELDARQLFDKMPQLNVVSATAMIGRCARQHQH 75

Query: 63  EEALGLFSAMFVLNLRPNEFTFGTVIHSATALRDIDIGKQLHACAIKIGLHSNVFVGSAA 122
           EEAL LFSAMFVLNLRPNEFTFGTVIHSATAL DID+GKQLHACAIKIGLHSNVFVGSAA
Sbjct: 76  EEALCLFSAMFVLNLRPNEFTFGTVIHSATALGDIDVGKQLHACAIKIGLHSNVFVGSAA 135

Query: 123 LDLYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQDAFRVFDEMPERNIVSWN 182
           LDLYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQDA RVFDEMPERNIVSWN
Sbjct: 136 LDLYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQDALRVFDEMPERNIVSWN 195

Query: 183 AMIGGFSRKGHNEDAVHLFIDMLREG 208
           A+IGGFS+KGHNEDAVHLFIDMLREG
Sbjct: 196 AVIGGFSQKGHNEDAVHLFIDMLREG 221

BLAST of Cp4.1LG10g08830 vs. NCBI nr
Match: KAG7033855.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 393 bits (1010), Expect = 3.54e-133
Identity = 197/204 (96.57%), Postives = 200/204 (98.04%), Query Frame = 0

Query: 5   IKLKADAHGAVVTPAEQSKKPPFPRGELDARQLFDKMPQINVVSATAMIGRCARQHQHEE 64
           +KLKADAHGAVVTPAEQSKK PFPRGELDARQLFDKMPQ+NVVSATAMIGRCARQHQHEE
Sbjct: 1   MKLKADAHGAVVTPAEQSKKAPFPRGELDARQLFDKMPQLNVVSATAMIGRCARQHQHEE 60

Query: 65  ALGLFSAMFVLNLRPNEFTFGTVIHSATALRDIDIGKQLHACAIKIGLHSNVFVGSAALD 124
           AL LFSAMFVLNLRPNEFTFGTVIHSATAL DIDIGKQLHACAIKIGLHSNVFVGSAALD
Sbjct: 61  ALCLFSAMFVLNLRPNEFTFGTVIHSATALGDIDIGKQLHACAIKIGLHSNVFVGSAALD 120

Query: 125 LYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQDAFRVFDEMPERNIVSWNAM 184
           LYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQDA RVFDEMPERNIVSWNAM
Sbjct: 121 LYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQDALRVFDEMPERNIVSWNAM 180

Query: 185 IGGFSRKGHNEDAVHLFIDMLREG 208
           IGGFS+KGHNEDAVHLFIDMLREG
Sbjct: 181 IGGFSQKGHNEDAVHLFIDMLREG 204

BLAST of Cp4.1LG10g08830 vs. NCBI nr
Match: XP_022977247.1 (pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 387 bits (995), Expect = 1.13e-130
Identity = 196/206 (95.15%), Postives = 199/206 (96.60%), Query Frame = 0

Query: 3   QLIKLKADAHGAVVTPAEQSKKPPFPRGELDARQLFDKMPQINVVSATAMIGRCARQHQH 62
           QLIKLKADAHGAVVTPA QSKK PFPRGELDARQLFDKMPQ+NVVSATAMIG CARQHQH
Sbjct: 16  QLIKLKADAHGAVVTPAVQSKKDPFPRGELDARQLFDKMPQLNVVSATAMIGCCARQHQH 75

Query: 63  EEALGLFSAMFVLNLRPNEFTFGTVIHSATALRDIDIGKQLHACAIKIGLHSNVFVGSAA 122
           EEAL LFSAMFVLNLRPNEFTFGTVIHSATAL DIDIGKQLHACAIKIGLHSNVFVGSAA
Sbjct: 76  EEALCLFSAMFVLNLRPNEFTFGTVIHSATALGDIDIGKQLHACAIKIGLHSNVFVGSAA 135

Query: 123 LDLYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQDAFRVFDEMPERNIVSWN 182
           LDLYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQ A RVFD+MPERNIVSWN
Sbjct: 136 LDLYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQAALRVFDKMPERNIVSWN 195

Query: 183 AMIGGFSRKGHNEDAVHLFIDMLREG 208
           AMIGGFS+KGHNEDAVHLFIDMLREG
Sbjct: 196 AMIGGFSQKGHNEDAVHLFIDMLREG 221

BLAST of Cp4.1LG10g08830 vs. NCBI nr
Match: XP_022949636.1 (pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 387 bits (994), Expect = 1.60e-130
Identity = 195/206 (94.66%), Postives = 199/206 (96.60%), Query Frame = 0

Query: 3   QLIKLKADAHGAVVTPAEQSKKPPFPRGELDARQLFDKMPQINVVSATAMIGRCARQHQH 62
           QLIKLKADA+GAVVTPA QSKK PFPR ELDARQLFDKMPQ+NVVSAT+MIGRCARQHQH
Sbjct: 16  QLIKLKADAYGAVVTPAVQSKKAPFPRSELDARQLFDKMPQLNVVSATSMIGRCARQHQH 75

Query: 63  EEALGLFSAMFVLNLRPNEFTFGTVIHSATALRDIDIGKQLHACAIKIGLHSNVFVGSAA 122
           EEAL LFSAMFVLNLRPNEFTFGTVIHSATAL DIDIGKQLHACAIKIGLHSNVFVGSAA
Sbjct: 76  EEALCLFSAMFVLNLRPNEFTFGTVIHSATALGDIDIGKQLHACAIKIGLHSNVFVGSAA 135

Query: 123 LDLYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQDAFRVFDEMPERNIVSWN 182
           LDLYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQDA RVFDEMPERNIVSWN
Sbjct: 136 LDLYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQDALRVFDEMPERNIVSWN 195

Query: 183 AMIGGFSRKGHNEDAVHLFIDMLREG 208
           AMIGGFS+KGHNEDAVHLFIDML EG
Sbjct: 196 AMIGGFSQKGHNEDAVHLFIDMLTEG 221

BLAST of Cp4.1LG10g08830 vs. ExPASy TrEMBL
Match: A0A6J1IHX7 (pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111477616 PE=4 SV=1)

HSP 1 Score: 387 bits (995), Expect = 5.48e-131
Identity = 196/206 (95.15%), Postives = 199/206 (96.60%), Query Frame = 0

Query: 3   QLIKLKADAHGAVVTPAEQSKKPPFPRGELDARQLFDKMPQINVVSATAMIGRCARQHQH 62
           QLIKLKADAHGAVVTPA QSKK PFPRGELDARQLFDKMPQ+NVVSATAMIG CARQHQH
Sbjct: 16  QLIKLKADAHGAVVTPAVQSKKDPFPRGELDARQLFDKMPQLNVVSATAMIGCCARQHQH 75

Query: 63  EEALGLFSAMFVLNLRPNEFTFGTVIHSATALRDIDIGKQLHACAIKIGLHSNVFVGSAA 122
           EEAL LFSAMFVLNLRPNEFTFGTVIHSATAL DIDIGKQLHACAIKIGLHSNVFVGSAA
Sbjct: 76  EEALCLFSAMFVLNLRPNEFTFGTVIHSATALGDIDIGKQLHACAIKIGLHSNVFVGSAA 135

Query: 123 LDLYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQDAFRVFDEMPERNIVSWN 182
           LDLYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQ A RVFD+MPERNIVSWN
Sbjct: 136 LDLYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQAALRVFDKMPERNIVSWN 195

Query: 183 AMIGGFSRKGHNEDAVHLFIDMLREG 208
           AMIGGFS+KGHNEDAVHLFIDMLREG
Sbjct: 196 AMIGGFSQKGHNEDAVHLFIDMLREG 221

BLAST of Cp4.1LG10g08830 vs. ExPASy TrEMBL
Match: A0A6J1GCJ3 (pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111452968 PE=4 SV=1)

HSP 1 Score: 387 bits (994), Expect = 7.76e-131
Identity = 195/206 (94.66%), Postives = 199/206 (96.60%), Query Frame = 0

Query: 3   QLIKLKADAHGAVVTPAEQSKKPPFPRGELDARQLFDKMPQINVVSATAMIGRCARQHQH 62
           QLIKLKADA+GAVVTPA QSKK PFPR ELDARQLFDKMPQ+NVVSAT+MIGRCARQHQH
Sbjct: 16  QLIKLKADAYGAVVTPAVQSKKAPFPRSELDARQLFDKMPQLNVVSATSMIGRCARQHQH 75

Query: 63  EEALGLFSAMFVLNLRPNEFTFGTVIHSATALRDIDIGKQLHACAIKIGLHSNVFVGSAA 122
           EEAL LFSAMFVLNLRPNEFTFGTVIHSATAL DIDIGKQLHACAIKIGLHSNVFVGSAA
Sbjct: 76  EEALCLFSAMFVLNLRPNEFTFGTVIHSATALGDIDIGKQLHACAIKIGLHSNVFVGSAA 135

Query: 123 LDLYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQDAFRVFDEMPERNIVSWN 182
           LDLYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQDA RVFDEMPERNIVSWN
Sbjct: 136 LDLYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQDALRVFDEMPERNIVSWN 195

Query: 183 AMIGGFSRKGHNEDAVHLFIDMLREG 208
           AMIGGFS+KGHNEDAVHLFIDML EG
Sbjct: 196 AMIGGFSQKGHNEDAVHLFIDMLTEG 221

BLAST of Cp4.1LG10g08830 vs. ExPASy TrEMBL
Match: A0A6J1CRE4 (pentatricopeptide repeat-containing protein At5g42450, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013558 PE=4 SV=1)

HSP 1 Score: 328 bits (841), Expect = 9.20e-108
Identity = 163/199 (81.91%), Postives = 179/199 (89.95%), Query Frame = 0

Query: 10  DAHGAVVTPAEQSKKPPFPRGELDARQLFDKMPQINVVSATAMIGRCARQHQHEEALGLF 69
           + HGA+ T   +S   PFPRG+L A Q+FDKMPQ+NVVSATA+IGR AR++QHEE L LF
Sbjct: 20  NGHGAIETLPLKSSNVPFPRGKLYASQMFDKMPQLNVVSATAVIGRHARKNQHEEVLCLF 79

Query: 70  SAMFVLNLRPNEFTFGTVIHSATALRDIDIGKQLHACAIKIGLHSNVFVGSAALDLYVKL 129
           SAMFVLNLRPNEFTFGTVIHSATA+RDIDIGK++HACA KIGLHSNVFVGSA LDLY KL
Sbjct: 80  SAMFVLNLRPNEFTFGTVIHSATAVRDIDIGKEIHACAKKIGLHSNVFVGSALLDLYAKL 139

Query: 130 SVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQDAFRVFDEMPERNIVSWNAMIGGFS 189
           SVIEE QRAFDDIK+PNVVSYTSLISGYLK E+IQDA +VFDEMPERNIVSWNAMIGG S
Sbjct: 140 SVIEEVQRAFDDIKIPNVVSYTSLISGYLKMERIQDALQVFDEMPERNIVSWNAMIGGLS 199

Query: 190 RKGHNEDAVHLFIDMLREG 208
           +KGHNEDAVHLFIDMLREG
Sbjct: 200 QKGHNEDAVHLFIDMLREG 218

BLAST of Cp4.1LG10g08830 vs. ExPASy TrEMBL
Match: A0A0A0KX53 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293300 PE=4 SV=1)

HSP 1 Score: 328 bits (840), Expect = 1.51e-107
Identity = 164/207 (79.23%), Postives = 177/207 (85.51%), Query Frame = 0

Query: 3   QLIKLKADAHGAVVTPAEQSKKPPFPRGELDARQLFDKMPQINVVSATAMIGRCARQHQH 62
           QL KLK D + AV TP    +   F  G+LDARQL+DKMP +NVVSAT  IGRCARQHQH
Sbjct: 17  QLTKLKPDGNAAVGTPPLPFQATSFSGGQLDARQLYDKMPHLNVVSATTAIGRCARQHQH 76

Query: 63  EEALGLFSAMFVLNLRPNEFTFGTVIHSATALRDIDIGKQLHACAIKIGLHSNVFVGSAA 122
           EEAL LFSAM VLNLRPNEFTFGTVI S  AL DI IGKQLH CAIK GLHSNVFVGSA 
Sbjct: 77  EEALSLFSAMLVLNLRPNEFTFGTVIQSPKALGDIHIGKQLHVCAIKTGLHSNVFVGSAL 136

Query: 123 LDLYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQDAFRVFDEMPERNIVSWN 182
           LDLYVK+ VIEEAQRAF+DIKMPNVVSYTSLISGYLK E+I+DA RVFDEMPERN+VSWN
Sbjct: 137 LDLYVKVGVIEEAQRAFEDIKMPNVVSYTSLISGYLKIERIRDALRVFDEMPERNVVSWN 196

Query: 183 AMIGGFSRKGHNEDAVHLFIDMLREGL 209
           +MIGGFS+KGHNEDAVHLFIDMLREG+
Sbjct: 197 SMIGGFSQKGHNEDAVHLFIDMLREGI 223

BLAST of Cp4.1LG10g08830 vs. ExPASy TrEMBL
Match: A0A5A7U174 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001620 PE=4 SV=1)

HSP 1 Score: 320 bits (819), Expect = 1.52e-104
Identity = 159/207 (76.81%), Postives = 174/207 (84.06%), Query Frame = 0

Query: 3   QLIKLKADAHGAVVTPAEQSKKPPFPRGELDARQLFDKMPQINVVSATAMIGRCARQHQH 62
           QL K+K + + AV TP   SK  PF  G+L ARQLFDKMP +NVVSATA IG CARQHQH
Sbjct: 17  QLTKIKPNGNAAVGTPPLGSKTTPFSGGQLAARQLFDKMPHLNVVSATAAIGHCARQHQH 76

Query: 63  EEALGLFSAMFVLNLRPNEFTFGTVIHSATALRDIDIGKQLHACAIKIGLHSNVFVGSAA 122
           EEAL LFSA+ VLNL+PNEFTFGTVIHSA AL DI  GKQLH CAIK G HS+VFVGSA 
Sbjct: 77  EEALYLFSAILVLNLKPNEFTFGTVIHSAKALGDIQSGKQLHVCAIKTGFHSDVFVGSAL 136

Query: 123 LDLYVKLSVIEEAQRAFDDIKMPNVVSYTSLISGYLKTEKIQDAFRVFDEMPERNIVSWN 182
           LDLY KL  IEEA+RAFDDIKMPNVVSYTSLISGYLK E+I DA RVFDEMPERN+VSWN
Sbjct: 137 LDLYFKLGFIEEAERAFDDIKMPNVVSYTSLISGYLKIERIHDALRVFDEMPERNVVSWN 196

Query: 183 AMIGGFSRKGHNEDAVHLFIDMLREGL 209
           +MI GFS+KGHNEDAVHLF+DMLREG+
Sbjct: 197 SMISGFSQKGHNEDAVHLFVDMLREGI 223

BLAST of Cp4.1LG10g08830 vs. TAIR 10
Match: AT5G42450.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-56
Identity = 100/177 (56.50%), Postives = 139/177 (78.53%), Query Frame = 0

Query: 33  DARQLFDKMPQINVVSATAMIGRCARQHQHEEALGLFSAMFVLNLRPNEFTFGTVIHSAT 92
           +A ++FD++P+++V+SATA+IGR  ++ +H EA   F  +  L +RPNEFTFGTVI S+T
Sbjct: 45  NAHKVFDEIPELDVISATAVIGRFVKESRHVEASQAFKRLLCLGIRPNEFTFGTVIGSST 104

Query: 93  ALRDIDIGKQLHACAIKIGLHSNVFVGSAALDLYVKLSVIEEAQRAFDDIKMPNVVSYTS 152
             RD+ +GKQLH  A+K+GL SNVFVGSA L+ YVKLS + +A+R FDD + PNVVS T+
Sbjct: 105 TSRDVKLGKQLHCYALKMGLASNVFVGSAVLNCYVKLSTLTDARRCFDDTRDPNVVSITN 164

Query: 153 LISGYLKTEKIQDAFRVFDEMPERNIVSWNAMIGGFSRKGHNEDAVHLFIDMLREGL 210
           LISGYLK  + ++A  +F  MPER++V+WNA+IGGFS+ G NE+AV+ F+DMLREG+
Sbjct: 165 LISGYLKKHEFEEALSLFRAMPERSVVTWNAVIGGFSQTGRNEEAVNTFVDMLREGV 221

BLAST of Cp4.1LG10g08830 vs. TAIR 10
Match: AT2G13600.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 126.3 bits (316), Expect = 2.9e-29
Identity = 65/178 (36.52%), Postives = 109/178 (61.24%), Query Frame = 0

Query: 33  DARQLFDKMPQINVVSATAMIGRCARQHQHEEALGLFSAMFVLNLRPNEFTFGTVIHSAT 92
           DA+++FD+M   NVVS  ++I    +     EAL +F  M    + P+E T  +VI +  
Sbjct: 205 DAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACA 264

Query: 93  ALRDIDIGKQLHACAIKIG-LHSNVFVGSAALDLYVKLSVIEEAQRAFDDIKMPNVVSYT 152
           +L  I +G+++H   +K   L +++ + +A +D+Y K S I+EA+  FD + + NV++ T
Sbjct: 265 SLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAET 324

Query: 153 SLISGYLKTEKIQDAFRVFDEMPERNIVSWNAMIGGFSRKGHNEDAVHLFIDMLREGL 210
           S+ISGY      + A  +F +M ERN+VSWNA+I G+++ G NE+A+ LF  + RE +
Sbjct: 325 SMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESV 382

BLAST of Cp4.1LG10g08830 vs. TAIR 10
Match: AT3G26540.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 122.9 bits (307), Expect = 3.2e-28
Identity = 61/180 (33.89%), Postives = 108/180 (60.00%), Query Frame = 0

Query: 33  DARQLFDKMPQINVVSATAMIGRCARQHQHEEALGLFSAMFVLNLRPNEFTFGTVIHSAT 92
           DAR++FD++   + VS   ++ R      ++EA+ +F  M  LN+RP   T  +V+ + +
Sbjct: 215 DARRVFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACS 274

Query: 93  ALRDIDIGKQLHACAIKIGLHSNVFVGSAALDLYVKLSVIEEAQRAFDDIKMPNVVSYTS 152
               +++GK +HA A+K+ + ++  V ++  D+YVK   +E A+R FD  +  ++ S+TS
Sbjct: 275 RSLALEVGKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTS 334

Query: 153 LISGYLKTEKIQDAFRVFDEMPERNIVSWNAMIGGFSRKGHNEDAVHLFIDMLREGLTRV 212
            +SGY  +   ++A  +FD MPERNIVSWNAM+GG+    H  D    F+ ++R+ +  +
Sbjct: 335 AMSGYAMSGLTREARELFDLMPERNIVSWNAMLGGYVH-AHEWDEALDFLTLMRQEIENI 393

BLAST of Cp4.1LG10g08830 vs. TAIR 10
Match: AT1G14470.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 119.4 bits (298), Expect = 3.6e-27
Identity = 64/177 (36.16%), Postives = 106/177 (59.89%), Query Frame = 0

Query: 33  DARQLFDKMPQINVVSATAMIGRCARQHQHEEALGLFSAMFVLNLRPNEFTFGTVIHSAT 92
           +AR+ FD+MP+ +VVS  AM+   A+    E+AL LF+ M  L +RPNE T+  VI + +
Sbjct: 216 NARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDALRLFNDMLRLGVRPNETTWVIVISACS 275

Query: 93  ALRDIDIGKQLHACAIKIGLHSNVFVGSAALDLYVKLSVIEEAQRAFDDI-KMPNVVSYT 152
              D  + + L     +  +  N FV +A LD++ K   I+ A+R F+++    N+V++ 
Sbjct: 276 FRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKCRDIQSARRIFNELGTQRNLVTWN 335

Query: 153 SLISGYLKTEKIQDAFRVFDEMPERNIVSWNAMIGGFSRKGHNEDAVHLFIDMLREG 209
           ++ISGY +   +  A ++FD MP+RN+VSWN++I G++  G    A+  F DM+  G
Sbjct: 336 AMISGYTRIGDMSSARQLFDTMPKRNVVSWNSLIAGYAHNGQAALAIEFFEDMIDYG 392

BLAST of Cp4.1LG10g08830 vs. TAIR 10
Match: AT3G13770.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 117.5 bits (293), Expect = 1.4e-26
Identity = 73/239 (30.54%), Postives = 108/239 (45.19%), Query Frame = 0

Query: 33  DARQLFDKMPQINVVSATAMIGRCARQHQHEEALGLFSAMFVLNLRPNEFTFGTVIHSAT 92
           DAR++ D+MP+ NVVS TAMI R ++     EAL +F+ M   + +PNEFTF TV+ S  
Sbjct: 105 DARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCI 164

Query: 93  ALRDIDIGKQLHACAIKIGLHSNVFVGSAALDLYVKLSVIEEAQRAFDDIKMPNVVSYTS 152
               + +GKQ+H   +K    S++FVGS+ LD+Y K   I+EA+  F+ +   +VVS T+
Sbjct: 165 RASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTA 224

Query: 153 LISGYL------------------------------------------------------ 202
           +I+GY                                                       
Sbjct: 225 IIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRE 284

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FIH21.8e-5556.50Pentatricopeptide repeat-containing protein At5g42450, mitochondrial OS=Arabidop... [more]
Q9SIT74.1e-2836.52Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX... [more]
Q9LRV24.5e-2733.89Pentatricopeptide repeat-containing protein At3g26540 OS=Arabidopsis thaliana OX... [more]
Q9M9R65.0e-2636.16Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana OX... [more]
Q9LIC31.9e-2530.54Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS... [more]
Match NameE-valueIdentityDescription
XP_023544385.13.14e-140100.00pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like [Cucur... [more]
KAG6603678.11.50e-13395.63Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
KAG7033855.13.54e-13396.57Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_022977247.11.13e-13095.15pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like [Cucur... [more]
XP_022949636.11.60e-13094.66pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like [Cucur... [more]
Match NameE-valueIdentityDescription
A0A6J1IHX75.48e-13195.15pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like OS=Cuc... [more]
A0A6J1GCJ37.76e-13194.66pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like OS=Cuc... [more]
A0A6J1CRE49.20e-10881.91pentatricopeptide repeat-containing protein At5g42450, mitochondrial OS=Momordic... [more]
A0A0A0KX531.51e-10779.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293300 PE=4 SV=1[more]
A0A5A7U1741.52e-10476.81Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
Match NameE-valueIdentityDescription
AT5G42450.11.3e-5656.50Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G13600.12.9e-2936.52Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G26540.13.2e-2833.89Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G14470.13.6e-2736.16Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G13770.11.4e-2630.54Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 148..179
e-value: 6.1E-8
score: 30.4
coord: 179..209
e-value: 1.1E-4
score: 20.1
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 179..209
e-value: 1.5E-7
score: 31.2
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 145..178
e-value: 7.9E-11
score: 42.0
coord: 45..90
e-value: 1.7E-8
score: 34.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 146..180
score: 11.805378
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 45..79
score: 8.867749
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 133..215
e-value: 2.0E-19
score: 72.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 31..132
e-value: 1.9E-13
score: 52.1
NoneNo IPR availablePANTHERPTHR24015OS07G0578800 PROTEIN-RELATEDcoord: 121..207
NoneNo IPR availablePANTHERPTHR24015:SF1795PPR CONTAINING PLANT-LIKE PROTEINcoord: 121..207
NoneNo IPR availablePANTHERPTHR24015:SF1795PPR CONTAINING PLANT-LIKE PROTEINcoord: 77..176
NoneNo IPR availablePANTHERPTHR24015OS07G0578800 PROTEIN-RELATEDcoord: 77..176
coord: 33..126
NoneNo IPR availablePANTHERPTHR24015:SF1795PPR CONTAINING PLANT-LIKE PROTEINcoord: 33..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g08830.1Cp4.1LG10g08830.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding