Cp4.1LG10g08530 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g08530
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionDNA polymerase, beta-like region
LocationCp4.1LG10: 5076179 .. 5076670 (+)
RNA-Seq ExpressionCp4.1LG10g08530
SyntenyCp4.1LG10g08530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTTGACTTTACAAGCGCTGCAGCCGTAGACCCAGAGAGAAGAACAATCAGCTTTACAAACAGAGCAGCGGGCAGAGGAGAGCTTGTGGAGGAAGAGCTTATGGTTGGGGTCAATAACGTGGCGGAGGCTGCTGGGGAGGTGGGTGCAAAGTGGGTGGACGTGGAAGTGGCAGTCCTTGCAGTGGTAGAAATTGGCGTGGATGGATTCGCAGCACACGTCGCATACCCGATGTGTTCGAGAGGGAACATGGGGGTTGCGGATCATGTGAGCGAGTGGGTGGCGGTGGAGGAAGGAGGAGAGTTCGTGGGGGTAGTCGGAGGAGGTATGCATCGTCGGAGGATGGTTTGGATGGGCATCAGCCATTTCTCTCGATCAGTACCCACAAAAGGAGACAAAAATAGCGCCTCTCTTGCTTGGGGAGCACTCTTGCTTATATGGCTCTCGTTGGTTTTGGCAAAGACCAAGACTTTTAGGGTCTTTATTTAA

mRNA sequence

ATGGATGTTGACTTTACAAGCGCTGCAGCCGTAGACCCAGAGAGAAGAACAATCAGCTTTACAAACAGAGCAGCGGGCAGAGGAGAGCTTGTGGAGGAAGAGCTTATGGTTGGGGTCAATAACGTGGCGGAGGCTGCTGGGGAGGTGGGTGCAAAGTGGGTGGACGTGGAAGTGGCAGTCCTTGCAGTGGTAGAAATTGGCGTGGATGGATTCGCAGCACACGTCGCATACCCGATGTGTTCGAGAGGGAACATGGGGGTTGCGGATCATGTGAGCGAGTGGGTGGCGGTGGAGGAAGGAGGAGAGTTCGTGGGGGTAGTCGGAGGAGGTATGCATCGTCGGAGGATGGTTTGGATGGGCATCAGCCATTTCTCTCGATCAGTACCCACAAAAGGAGACAAAAATAGCGCCTCTCTTGCTTGGGGAGCACTCTTGCTTATATGGCTCTCGTTGGTTTTGGCAAAGACCAAGACTTTTAGGGTCTTTATTTAA

Coding sequence (CDS)

ATGGATGTTGACTTTACAAGCGCTGCAGCCGTAGACCCAGAGAGAAGAACAATCAGCTTTACAAACAGAGCAGCGGGCAGAGGAGAGCTTGTGGAGGAAGAGCTTATGGTTGGGGTCAATAACGTGGCGGAGGCTGCTGGGGAGGTGGGTGCAAAGTGGGTGGACGTGGAAGTGGCAGTCCTTGCAGTGGTAGAAATTGGCGTGGATGGATTCGCAGCACACGTCGCATACCCGATGTGTTCGAGAGGGAACATGGGGGTTGCGGATCATGTGAGCGAGTGGGTGGCGGTGGAGGAAGGAGGAGAGTTCGTGGGGGTAGTCGGAGGAGGTATGCATCGTCGGAGGATGGTTTGGATGGGCATCAGCCATTTCTCTCGATCAGTACCCACAAAAGGAGACAAAAATAGCGCCTCTCTTGCTTGGGGAGCACTCTTGCTTATATGGCTCTCGTTGGTTTTGGCAAAGACCAAGACTTTTAGGGTCTTTATTTAA

Protein sequence

MDVDFTSAAAVDPERRTISFTNRAAGRGELVEEELMVGVNNVAEAAGEVGAKWVDVEVAVLAVVEIGVDGFAAHVAYPMCSRGNMGVADHVSEWVAVEEGGEFVGVVGGGMHRRRMVWMGISHFSRSVPTKGDKNSASLAWGALLLIWLSLVLAKTKTFRVFI
Homology
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BLAST of Cp4.1LG10g08530 vs. ExPASy TrEMBL
Match: A0A0A0KXM9 (DNA polymerase, beta-like region OS=Cucumis sativus OX=3659 GN=Csa_4G297430 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.42e-20
Identity = 53/101 (52.48%), Postives = 68/101 (67.33%), Query Frame = 0 

Query: 1   MDVDFTSAAAVDPERRTISFTNRAAGRGELVEEELMVGVNNVAEAAGEVGAKWVDVEVAV 60
           M++D T+ AA++PERRTI F NRA+ RGEL E E M  V+ VAE   E+GAKW+D+EVAV
Sbjct: 60  MNIDSTNVAAINPERRTILFANRASARGELAEGEFMAAVDEVAELLRELGAKWMDIEVAV 119

Query: 61  LAVVEIGVDGFAAHVAYPMCSRGNMGVADHVSEWVAVEEGG 101
           +A VE  VDGF A +A  M       + D  S+ V VE+GG
Sbjct: 120 IAAVEHAVDGFTADIAAAMVH-----LVDQ-SKAVGVEKGG 154

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g08530 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g08530 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g08530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXM92.42e-2052.48DNA polymerase, beta-like region OS=Cucumis sativus OX=3659 GN=Csa_4G297430 PE=4... [more]
BLAST of Cp4.1LG10g08530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g08530.1Cp4.1LG10g08530.1mRNA