Cp4.1LG10g07600 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g07600
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Seed maturation protein PM41
Location	Cp4.1LG10: 5540142 .. 5540393 (-)
RNA-Seq Expression	Cp4.1LG10g07600
Synteny	Cp4.1LG10g07600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGAGCTCAGGGCGCGCAGCCGAAGGACTCGTTCACGGCCACCACGTACGAGTCAGTGCCCGGGGGCGAGAACCGCACCAGGACCGATCTCCGTTCCCGGGAGGACGCCGGAATGATCCAGATCGATAAACTTCAGGACAAAGTGGAAGACGCCGCCGGGAAAGGCGGCCCGGTGTTCGGCGCCGGCAAAGATGACAAAAAACAAGACCTTGGAGTTAGCGGCACAGGACAGGACAGGATAGGATAG

mRNA sequence

ATGTCAGGAGCTCAGGGCGCGCAGCCGAAGGACTCGTTCACGGCCACCACGTACGAGTCAGTGCCCGGGGGCGAGAACCGCACCAGGACCGATCTCCGTTCCCGGGAGGACGCCGGAATGATCCAGATCGATAAACTTCAGGACAAAGTGGAAGACGCCGCCGGGAAAGGCGGCCCGGTGTTCGGCGCCGGCAAAGATGACAAAAAACAAGACCTTGGAGTTAGCGGCACAGGACAGGACAGGATAGGATAG

Coding sequence (CDS)

ATGTCAGGAGCTCAGGGCGCGCAGCCGAAGGACTCGTTCACGGCCACCACGTACGAGTCAGTGCCCGGGGGCGAGAACCGCACCAGGACCGATCTCCGTTCCCGGGAGGACGCCGGAATGATCCAGATCGATAAACTTCAGGACAAAGTGGAAGACGCCGCCGGGAAAGGCGGCCCGGTGTTCGGCGCCGGCAAAGATGACAAAAAACAAGACCTTGGAGTTAGCGGCACAGGACAGGACAGGATAGGATAG

Protein sequence

MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPVFGAGKDDKKQDLGVSGTGQDRIG

Homology

[Close]

BLAST of Cp4.1LG10g07600 vs. NCBI nr
Match: XP_023544782.1 (uncharacterized protein LOC111804271 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164 bits (416), Expect = 4.59e-51
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVSGTGQDRIG 83
          FGAGKDDKKQDLGVSGTGQDRIG
Sbjct: 61 FGAGKDDKKQDLGVSGTGQDRIG 83

[Close]

BLAST of Cp4.1LG10g07600 vs. NCBI nr
Match: XP_022949816.1 (uncharacterized protein LOC111453100 [Cucurbita moschata])

HSP 1 Score: 155 bits (391), Expect = 2.59e-47
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVSGTG 78
          FGAGKDDKKQDLGVSGTG
Sbjct: 61 FGAGKDDKKQDLGVSGTG 78

[Close]

BLAST of Cp4.1LG10g07600 vs. NCBI nr
Match: XP_022978324.1 (uncharacterized protein LOC111478345 [Cucurbita maxima])

HSP 1 Score: 153 bits (387), Expect = 1.06e-46
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVSGTG 78
          FGAGKD+KKQDLGVSGTG
Sbjct: 61 FGAGKDEKKQDLGVSGTG 78

[Close]

BLAST of Cp4.1LG10g07600 vs. NCBI nr
Match: KAG6603554.1 (hypothetical protein SDJN03_04163, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033744.1 hypothetical protein SDJN02_03469, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152 bits (384), Expect = 3.03e-46
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPK SFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKGSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVSGTG 78
          FGAGKDDKKQDLGVSGTG
Sbjct: 61 FGAGKDDKKQDLGVSGTG 78

[Close]

BLAST of Cp4.1LG10g07600 vs. NCBI nr
Match: XP_038883613.1 (uncharacterized protein LOC120074530 [Benincasa hispida])

HSP 1 Score: 150 bits (378), Expect = 2.49e-45
Identity = 74/78 (94.87%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPK+SFTATTYESVPGGENRT+TDLRSREDAGMIQIDKLQDKV+DAAGKGGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVPGGENRTKTDLRSREDAGMIQIDKLQDKVQDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVSGTG 78
          FGAGKDDKKQDLGV+GTG
Sbjct: 61 FGAGKDDKKQDLGVTGTG 78

[Close]

BLAST of Cp4.1LG10g07600 vs. ExPASy TrEMBL
Match: A0A6J1GD40 (uncharacterized protein LOC111453100 OS=Cucurbita moschata OX=3662 GN=LOC111453100 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 1.25e-47
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVSGTG 78
          FGAGKDDKKQDLGVSGTG
Sbjct: 61 FGAGKDDKKQDLGVSGTG 78

[Close]

BLAST of Cp4.1LG10g07600 vs. ExPASy TrEMBL
Match: A0A6J1ITS5 (uncharacterized protein LOC111478345 OS=Cucurbita maxima OX=3661 GN=LOC111478345 PE=4 SV=1)

HSP 1 Score: 153 bits (387), Expect = 5.11e-47
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVSGTG 78
          FGAGKD+KKQDLGVSGTG
Sbjct: 61 FGAGKDEKKQDLGVSGTG 78

[Close]

BLAST of Cp4.1LG10g07600 vs. ExPASy TrEMBL
Match: A0A0A0KY41 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G314500 PE=4 SV=1)

HSP 1 Score: 147 bits (372), Expect = 9.95e-45
Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPK+SFTATTYESV GGENRTRTD+RSREDAGMIQIDK+QDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKIQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVSGTG 78
          FGAGKDDKKQDLGV+GTG
Sbjct: 61 FGAGKDDKKQDLGVTGTG 78

[Close]

BLAST of Cp4.1LG10g07600 vs. ExPASy TrEMBL
Match: A0A5D3BF74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold67599G00010 PE=4 SV=1)

HSP 1 Score: 147 bits (370), Expect = 2.01e-44
Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPK+SFTATTYESV GGENRTRTD+RSREDAGMIQIDKLQDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVSGTG 78
          FGAGK+DKKQDLGV+GTG
Sbjct: 61 FGAGKEDKKQDLGVTGTG 78

[Close]

BLAST of Cp4.1LG10g07600 vs. ExPASy TrEMBL
Match: A0A1S3CL14 (uncharacterized protein LOC103502173 OS=Cucumis melo OX=3656 GN=LOC103502173 PE=4 SV=1)

HSP 1 Score: 147 bits (370), Expect = 2.01e-44
Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPK+SFTATTYESV GGENRTRTD+RSREDAGMIQIDKLQDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVSGTG 78
          FGAGK+DKKQDLGV+GTG
Sbjct: 61 FGAGKEDKKQDLGVTGTG 78

[Close]

BLAST of Cp4.1LG10g07600 vs. TAIR 10
Match: AT2G21820.1 (unknown protein; Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 124.4 bits (311), Expect = 4.3e-29
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGA+P DS TATTYESV GG+N+T+ D+RS+ED G IQ+DKLQDKV DAAG GGPV
Sbjct: 1  MSGAQGAEPMDSRTATTYESVEGGQNKTKLDIRSKEDEGGIQVDKLQDKVSDAAGLGGPV 60

Query: 61 FGAGKDDKKQDLGVSGTG 79
          FGAGKDDKKQDLGV+GTG
Sbjct: 61 FGAGKDDKKQDLGVTGTG 78

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g07600 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG10g07600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544782.1	4.59e-51	100.00	uncharacterized protein LOC111804271 [Cucurbita pepo subsp. pepo]	[more]
XP_022949816.1	2.59e-47	100.00	uncharacterized protein LOC111453100 [Cucurbita moschata]	[more]
XP_022978324.1	1.06e-46	98.72	uncharacterized protein LOC111478345 [Cucurbita maxima]	[more]
KAG6603554.1	3.03e-46	98.72	hypothetical protein SDJN03_04163, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038883613.1	2.49e-45	94.87	uncharacterized protein LOC120074530 [Benincasa hispida]	[more]

BLAST of Cp4.1LG10g07600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GD40	1.25e-47	100.00	uncharacterized protein LOC111453100 OS=Cucurbita moschata OX=3662 GN=LOC1114531...	[more]
A0A6J1ITS5	5.11e-47	98.72	uncharacterized protein LOC111478345 OS=Cucurbita maxima OX=3661 GN=LOC111478345...	[more]
A0A0A0KY41	9.95e-45	93.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G314500 PE=4 SV=1	[more]
A0A5D3BF74	2.01e-44	93.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CL14	2.01e-44	93.59	uncharacterized protein LOC103502173 OS=Cucumis melo OX=3656 GN=LOC103502173 PE=...	[more]

BLAST of Cp4.1LG10g07600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21820.1	4.3e-29	79.49	unknown protein; Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..83
None	No IPR available	PANTHER	PTHR36012	OS01G0654400 PROTEIN	coord: 1..78
None	No IPR available	PANTHER	PTHR36012:SF2	OS01G0654400 PROTEIN	coord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g07600.1	Cp4.1LG10g07600.1	mRNA