Cp4.1LG10g06840 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTGCAGGTACGAACTACCCTTTTCCATCTATATGTTGATCCGTGAGTAACTAAAACCAGAGTTGGCCAGCTGATGATAATTCCGGTCAGATGTAAATAGCCGTAGATACATAAGAAAATCCATAAACTCTAGCTACGCACCGAGAACTACAGGTTGTAGTTGGGCCGAGCATAAATAAACGAAAACCACCACAAATTCTTAGAAGTGGACTCAAAGTGGCCCAAGTTTGGCCGCAACAAAACAGGCCCGCTTGATGGTGCGTTGCCCAATGTCATGCTTCCCACACTGAATACGATTACCTTCTATCCAGCAATGAGCGGTGCGCAGGTGGAGGCTAATCCTGTTTTGATTTATCTTCTTCTGAAACTAGAGAGCAGTGTTTGTTGGATATGAGCTCGCTGACAATTTCATTTAGGGCTGCCACTCCCAGAACGCTCAGCTCCAACAACATTTCACCTGATAAATGTGTAACGACGAAACAAGTCTCCAAATTTACCTACACCCGTACCCCAAAAATCTCTTCTTCTCTTCAGGAACTGGAAATGAAGGAGAGCCCAGCTTCATTCGGCAGAAGAGGAGCAATTGGTTGTGGATTCCTACTCGGCCTTGCCAGCGTTCTCCTACAACCATTGCCTGCAACTGCTGAAGCCACACCATGTGAATTCACAACAGCTCCGTCGGGCCTTGCATTCTGCGATAAAGTTGTCGGGACAGGCCCTGAGGCTGAGAAAGGACAGCTAATCAAGGTGTGCCTTCAATCACTCGTACCCCTTTGTTCTCTACCATAGATTCAATGATTTGAAATTAAAGTTGATAAATCTGTGTGAATTGATGTTGTATTGTTGTATTGTGGTATTGTATACCCGTGTGAAGTGACAAATTGGTGATTGGTAGGCACATTATGTTGGAAAACTAGAGAGCGGAAAGGTGTTTGATAGCAGCTACAATCGGGGGAAGCCGTTAACCTTTCGAGTTGGGGTTGGTGAGGTATATATGTAGTTATATATATTTTAAGAACATGGGAAGGAGAGAGTGGATATTAATTAATTGGGAGAAGTAAAGTAAAAATGTGCAGGTTATAAAAGGTTGGGATGAAGGTATTCTTGGGGGCGATGGAGTTCCAGCAATGCTTCCGGGTACGTTTTCCACATAAACTGGAAATTTTGTTAAGCCTATGGAAGTGGAATGGTGTTAATTAAAACATCAATTTCCTTGACACTTAATGGGGTTCGTGGGATTTGTGAAGGAGGGAAGCGGGTTCTAAAGCTTCCTCCACAACTAGGGTATGGCGCGAGAGGTGCTGGATGCAGAGGAGGTAGGATGAAATTTCTGGTTGTTTTCATGTACTGGTAAAGGGGGTTATGAAATCAATTACTTTTAATTAATTGGATAAAGGAGTTTGTAGTTGAAAGTGGTGTTTTGGCTTGATTGCGTATGCAGGGTCGTGTATCATTCCTCCCAACTCAGTTCTCTTATTTGATGTGGAGTTCATTGGGAAGGCATGACATCATCATCCATCCTGGTTCCTTTCACATCTTCGAATTTTTATTATATTTTTTATTTACTTAGAATTACAATTACAAACTCCCCGTACTTGGTTTGGTGCCTTTTCTCGGCCTGTTGTTAACTATACACTTGTTAATTCTAATTTGGTTGCTGAGGTTTCAATTGCGACATACATGGTCATTACTTATTTGATTATATTAATTTTATGTTTATTTACCATTGGACTCTGAGTTGGCAAAATTGAGATCACATTTCTTGCCCACTCTTTCCCCCTCCTTTTTCTCCTTCTAGATTGAAACAGGCCCCTTCTAGATCCTATTTCCTCCTTCCATTTCCATCATTCTCTCAACTTGATAATTCCTCCACCACCGGCAGTCGATCGAATGGAAGCAAAAGGACACGATAGTCGATCGAATGGAAGCAAAAGGACACGATAGTCGATCGAATGGGTTGGTGGGACTGTGTGTTTCTCAACTGTGGTGAGAGAGACAGGGTAGCGGCCAGGTGTGACAAA CTTGCAGGTACGAACTACCCTTTTCCATCTATATGTTGATCCGTGAGTAACTAAAACCAGAGTTGGCCAGCTGATGATAATTCCGGTCAGATGTAAATAGCCGTAGATACATAAGAAAATCCATAAACTCTAGCTACGCACCGAGAACTACAGGTTGTAGTTGGGCCGAGCATAAATAAACGAAAACCACCACAAATTCTTAGAAGTGGACTCAAAGTGGCCCAAGTTTGGCCGCAACAAAACAGGCCCGCTTGATGGTGCGTTGCCCAATGTCATGCTTCCCACACTGAATACGATTACCTTCTATCCAGCAATGAGCGGTGCGCAGGTGGAGGCTAATCCTGTTTTGATTTATCTTCTTCTGAAACTAGAGAGCAGTGTTTGTTGGATATGAGCTCGCTGACAATTTCATTTAGGGCTGCCACTCCCAGAACGCTCAGCTCCAACAACATTTCACCTGATAAATGTGTAACGACGAAACAAGTCTCCAAATTTACCTACACCCGTACCCCAAAAATCTCTTCTTCTCTTCAGGAACTGGAAATGAAGGAGAGCCCAGCTTCATTCGGCAGAAGAGGAGCAATTGGTTGTGGATTCCTACTCGGCCTTGCCAGCGTTCTCCTACAACCATTGCCTGCAACTGCTGAAGCCACACCATGTGAATTCACAACAGCTCCGTCGGGCCTTGCATTCTGCGATAAAGTTGTCGGGACAGGCCCTGAGGCTGAGAAAGGACAGCTAATCAAGGCACATTATGTTGGAAAACTAGAGAGCGGAAAGGTGTTTGATAGCAGCTACAATCGGGGGAAGCCGTTAACCTTTCGAGTTGGGGTTGGTGAGGTTATAAAAGGTTGGGATGAAGGTATTCTTGGGGGCGATGGAGTTCCAGCAATGCTTCCGGGAGGGAAGCGGGTTCTAAAGCTTCCTCCACAACTAGGGTATGGCGCGAGAGGTGCTGGATGCAGAGGAGGGTCGTGTATCATTCCTCCCAACTCAGTTCTCTTATTTGATGTGGAGTTCATTGGGAAGGCATGACATCATCATCCATCCTGGTTCCTTTCACATCTTCGAATTTTTATTATATTTTTTATTTACTTAGAATTACAATTACAAACTCCCCGTACTTGGTTTGGTGCCTTTTCTCGGCCTGTTGTTAACTATACACTTGTTAATTCTAATTTGGTTGCTGAGGTTTCAATTGCGACATACATGGTCATTACTTATTTGATTATATTAATTTTATGTTTATTTACCATTGGACTCTGAGTTGGCAAAATTGAGATCACATTTCTTGCCCACTCTTTCCCCCTCCTTTTTCTCCTTCTAGATTGAAACAGGCCCCTTCTAGATCCTATTTCCTCCTTCCATTTCCATCATTCTCTCAACTTGATAATTCCTCCACCACCGGCAGTCGATCGAATGGAAGCAAAAGGACACGATAGTCGATCGAATGGAAGCAAAAGGACACGATAGTCGATCGAATGGGTTGGTGGGACTGTGTGTTTCTCAACTGTGGTGAGAGAGACAGGGTAGCGGCCAGGTGTGACAAA ATGAGCTCGCTGACAATTTCATTTAGGGCTGCCACTCCCAGAACGCTCAGCTCCAACAACATTTCACCTGATAAATGTGTAACGACGAAACAAGTCTCCAAATTTACCTACACCCGTACCCCAAAAATCTCTTCTTCTCTTCAGGAACTGGAAATGAAGGAGAGCCCAGCTTCATTCGGCAGAAGAGGAGCAATTGGTTGTGGATTCCTACTCGGCCTTGCCAGCGTTCTCCTACAACCATTGCCTGCAACTGCTGAAGCCACACCATGTGAATTCACAACAGCTCCGTCGGGCCTTGCATTCTGCGATAAAGTTGTCGGGACAGGCCCTGAGGCTGAGAAAGGACAGCTAATCAAGGCACATTATGTTGGAAAACTAGAGAGCGGAAAGGTGTTTGATAGCAGCTACAATCGGGGGAAGCCGTTAACCTTTCGAGTTGGGGTTGGTGAGGTTATAAAAGGTTGGGATGAAGGTATTCTTGGGGGCGATGGAGTTCCAGCAATGCTTCCGGGAGGGAAGCGGGTTCTAAAGCTTCCTCCACAACTAGGGTATGGCGCGAGAGGTGCTGGATGCAGAGGAGGGTCGTGTATCATTCCTCCCAACTCAGTTCTCTTATTTGATGTGGAGTTCATTGGGAAGGCATGA MSSLTISFRAATPRTLSSNNISPDKCVTTKQVSKFTYTRTPKISSSLQELEMKESPASFGRRGAIGCGFLLGLASVLLQPLPATAEATPCEFTTAPSGLAFCDKVVGTGPEAEKGQLIKAHYVGKLESGKVFDSSYNRGKPLTFRVGVGEVIKGWDEGILGGDGVPAMLPGGKRVLKLPPQLGYGARGAGCRGGSCIIPPNSVLLFDVEFIGKA Homology
BLAST of Cp4.1LG10g06840 vs. ExPASy Swiss-Prot
Match: Q9SCY2 (Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FKBP13 PE=1 SV=2) HSP 1 Score: 244.2 bits (622), Expect = 1.3e-63 Identity = 128/221 (57.92%), Postives = 153/221 (69.23%), Query Frame = 0
BLAST of Cp4.1LG10g06840 vs. ExPASy Swiss-Prot
Match: Q9SCY3 (Photosynthetic NDH subunit of lumenal location 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL4 PE=1 SV=1) HSP 1 Score: 157.1 bits (396), Expect = 2.2e-37 Identity = 84/179 (46.93%), Postives = 108/179 (60.34%), Query Frame = 0
BLAST of Cp4.1LG10g06840 vs. ExPASy Swiss-Prot
Match: P0A0W2 (FK506-binding protein OS=Neisseria meningitidis serogroup B (strain MC58) OX=122586 GN=fbp PE=1 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 2.0e-22 Identity = 57/114 (50.00%), Postives = 72/114 (63.16%), Query Frame = 0
BLAST of Cp4.1LG10g06840 vs. ExPASy Swiss-Prot
Match: P56989 (FK506-binding protein OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=fbp PE=3 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 2.6e-22 Identity = 55/105 (52.38%), Postives = 70/105 (66.67%), Query Frame = 0
BLAST of Cp4.1LG10g06840 vs. ExPASy Swiss-Prot
Match: Q54NB6 (FK506-binding protein 4 OS=Dictyostelium discoideum OX=44689 GN=fkbp4 PE=1 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 7.4e-22 Identity = 57/121 (47.11%), Postives = 72/121 (59.50%), Query Frame = 0
BLAST of Cp4.1LG10g06840 vs. NCBI nr
Match: XP_022925594.1 (peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic isoform X2 [Cucurbita moschata] >XP_023544801.1 peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic isoform X3 [Cucurbita pepo subsp. pepo] >KAG6581529.1 Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 427 bits (1097), Expect = 1.14e-150 Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0
BLAST of Cp4.1LG10g06840 vs. NCBI nr
Match: XP_022978964.1 (peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic isoform X2 [Cucurbita maxima]) HSP 1 Score: 424 bits (1089), Expect = 1.89e-149 Identity = 212/214 (99.07%), Postives = 213/214 (99.53%), Query Frame = 0
BLAST of Cp4.1LG10g06840 vs. NCBI nr
Match: KAG7034822.1 (Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 413 bits (1061), Expect = 8.62e-145 Identity = 214/239 (89.54%), Postives = 214/239 (89.54%), Query Frame = 0
BLAST of Cp4.1LG10g06840 vs. NCBI nr
Match: XP_038877522.1 (peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic [Benincasa hispida]) HSP 1 Score: 392 bits (1008), Expect = 4.22e-137 Identity = 195/214 (91.12%), Postives = 204/214 (95.33%), Query Frame = 0
BLAST of Cp4.1LG10g06840 vs. NCBI nr
Match: XP_023544800.1 (peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 385 bits (990), Expect = 2.42e-134 Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0
BLAST of Cp4.1LG10g06840 vs. ExPASy TrEMBL
Match: A0A6J1ECL9 (Peptidylprolyl isomerase OS=Cucurbita moschata OX=3662 GN=LOC111432980 PE=4 SV=1) HSP 1 Score: 427 bits (1097), Expect = 5.51e-151 Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0
BLAST of Cp4.1LG10g06840 vs. ExPASy TrEMBL
Match: A0A6J1IVG8 (Peptidylprolyl isomerase OS=Cucurbita maxima OX=3661 GN=LOC111478756 PE=4 SV=1) HSP 1 Score: 424 bits (1089), Expect = 9.15e-150 Identity = 212/214 (99.07%), Postives = 213/214 (99.53%), Query Frame = 0
BLAST of Cp4.1LG10g06840 vs. ExPASy TrEMBL
Match: A0A6J1EFM9 (Peptidylprolyl isomerase OS=Cucurbita moschata OX=3662 GN=LOC111432980 PE=4 SV=1) HSP 1 Score: 385 bits (990), Expect = 1.26e-134 Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0
BLAST of Cp4.1LG10g06840 vs. ExPASy TrEMBL
Match: A0A6J1IUS2 (Peptidylprolyl isomerase OS=Cucurbita maxima OX=3661 GN=LOC111478756 PE=4 SV=1) HSP 1 Score: 382 bits (982), Expect = 2.09e-133 Identity = 192/194 (98.97%), Postives = 193/194 (99.48%), Query Frame = 0
BLAST of Cp4.1LG10g06840 vs. ExPASy TrEMBL
Match: A0A0A0KL42 (Peptidylprolyl isomerase OS=Cucumis sativus OX=3659 GN=Csa_6G538680 PE=4 SV=1) HSP 1 Score: 380 bits (977), Expect = 1.09e-132 Identity = 191/214 (89.25%), Postives = 198/214 (92.52%), Query Frame = 0
BLAST of Cp4.1LG10g06840 vs. TAIR 10
Match: AT5G45680.1 (FK506-binding protein 13 ) HSP 1 Score: 244.2 bits (622), Expect = 9.5e-65 Identity = 128/221 (57.92%), Postives = 153/221 (69.23%), Query Frame = 0
BLAST of Cp4.1LG10g06840 vs. TAIR 10
Match: AT4G39710.1 (FK506-binding protein 16-2 ) HSP 1 Score: 157.1 bits (396), Expect = 1.5e-38 Identity = 84/179 (46.93%), Postives = 108/179 (60.34%), Query Frame = 0
BLAST of Cp4.1LG10g06840 vs. TAIR 10
Match: AT4G39710.2 (FK506-binding protein 16-2 ) HSP 1 Score: 107.1 bits (266), Expect = 1.8e-23 Identity = 62/136 (45.59%), Postives = 79/136 (58.09%), Query Frame = 0
BLAST of Cp4.1LG10g06840 vs. TAIR 10
Match: AT4G25340.1 (FK506 BINDING PROTEIN 53 ) HSP 1 Score: 98.2 bits (243), Expect = 8.4e-21 Identity = 55/130 (42.31%), Postives = 77/130 (59.23%), Query Frame = 0
BLAST of Cp4.1LG10g06840 vs. TAIR 10
Match: AT5G48580.1 (FK506- and rapamycin-binding protein 15 kD-2 ) HSP 1 Score: 97.1 bits (240), Expect = 1.9e-20 Identity = 49/101 (48.51%), Postives = 62/101 (61.39%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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