Cp4.1LG10g06550 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g06550
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Small nuclear ribonucleoprotein-associated protein
Location	Cp4.1LG10: 245412 .. 248685 (-)
RNA-Seq Expression	Cp4.1LG10g06550
Synteny	Cp4.1LG10g06550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATGTCTAAAAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGGGTCACCATCCAAGATGGTCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCTCCAGCTAAGGGTAAAAAGACTAATGAGGAACGCGACGAGCGTCGCACCCTTGGGCTTGTTCTTCTTCGCGGCGAGGAGGTCATTTCCATGACTGTTGAGGGTCCACCACCTGCTGAAGAGTCCCGTGCTAAGGCCGTCAATGCTGCGGCTATGGCTGGGCCTGGTATTGGTCGTGCCGCTGGGAGGGGTATCCCGACTGCTCCTCTTGTTCAGGCTCAGCCTGGTCTTGCTGGGCCAGTTCGTGGAGTGGGTGGACCAGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCACAGCTGTCCGCTCCGCCCATGACATATCCAGCTGCCCCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCAGGACAAGCTCCACCTCCGGTTGGGAGAGGAATGCCTCCGCCGGGGCCTCCGCCACAGTTCTCTGCAGCAAGACCAGGGGGAGCTCCGCCACAGCCATTCCCAGTTCCTCCTCAATTTGCTCAGAGACCCATGGGACCTCCACCAACCGGGCAGGTGATGAGGGGACCGCCACCCCCACCCAGACCTGGAATGCCTGCGCCCCCGCCTCGACCGGGGATGCCTCCTCCACCCGGTGGGGCAGTTCCTATTTACGGACCACCTCGTCCTGGCATGCCGCCTCCACCCGCCCCACAAAATCAGCAGCAAAATCAACAGCAATAGTGTTGGTATGTCTCTTTATCGAATTCGAAATTTGGTAGTTTGCCCTTATTGTGTCCAGTTCTTCGTTTAAGCTATTACTGCAAAACATGCGATCATTGAAGTCAAGTATAACGGTCTCTGGTTAATTCAAGAACACTCTATTTAGAATGGATCGCATTTGAATATTTTTCCAATTCCAATAAATTTGACTAAATTCAAGAACACATCTTGGTACCCGTACTTTCCCATTGAAATAACAAGTTAGTTCATGAACTTTATTATGGAATAACTATTATAAATACATTTCGTCCTTAACGGCTTATCAATTTATACAAGTAAAAAACAGAAGAAAACTTACCGTGGCTGAAATTGGTGAATAGGATAGTTTCTTCAATACTCTCTCACACGTTGTTCTCTCTGTCCGTGAAGAAAATTTTGTCCAGTTCTTTTTCTTCTTTGGATACTCAAGGGAAGGATGACATTTATTAAATCACTTGGAATGGGAAATATCCTAAAAAAAGTTAAGTTTTAGATTTGGGAGCTTAGCCATGCTTGCTTAAACACCAAGGACAAGCTTCAGTATATATATCTCCTGGTACTAGTTTATCTCCCAGCTGGTTTGTTATGTGCAAAAAGGGTCCAGAATCTCACAGCCATCTTTTCATCTGTTGTGCCTTTGCCAGATCCATTTGGGATTACATAACACAGATTTTTGGTTTCCTTCAAATATCACTCTCCTTGGGCACCCGTTCAAGAAAGAAAAAAAGACTCTTTGGTTTAATTTCGTTCGGGCTTTTTTTTTCCGTACTTGTAGCTGGATAGGAGTTTGCAGATTTTCTCCGATATTAATTAGGGATTTGAATCTTTTGCATCATCTGTTTCTTTTTTAGTTCTCTCATTGTTTAAATTGGTTTCCCGATATGTTATTATGGTTTAAATTCTCTTACAACCCACTGGAAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTGATCCTTTGGATTGGTTTCTCCTTGTAATTTCATTTGATCAATGAAATGTTTGTTTCCTAGATTTAACATAGTTATCACAAAAGTTCAGTAAGAGTTTCTGCCATGCCTAAGTTTGTCCCTTTCTTGTCTTTTTTGTGCTCAGGAGTTACGACACTGTTGATTAATGGTTCTCTTGCACCTCAATAGTTCCTCAAGGCAGGTTCTTTAATTGCTCGTTGCTTAGGATACACTTGCTTTTCTGGTTCCATTAAAACTAGTGATATTTTTAATCATGGCCAAAGTGAGTCTGTAGGAAAAGATTAACATTCTTGACGGTTTTTTCCTTCCAAATTCTTTGACCGGTCCTTCAATAGGAACCAATCTCTTTTTGTGGACCTAAATTAAATATTTATTTAATGAGATACCTATATTAGGATTAAATGGTTTGACTGAATGTTCCTATAAACTAAGGGCGTGACTTACTATTTGGCAAGTTACGAGTAATGTACTATCCTTTCCTAATAGAAGTTTGTGATGGTGTTATTATCCTGTTTCATATTGCTCGAATGTTTCCTCCTAGAGGATGCTTATTTCCCAACTTCCTTGTTCATAGATAGCCATTGGTATTGATGAGTTGAAAGATTTCCAGGAATCAAAAGAGGATGTTTCTGTGGAGATCTTGTTTCTCTTTCTTTTTTTCTTTTTTTTTTCTTTCGTTTTTTTTTTTCCTGCAATCAGTTTTCTTTTAATATTTTCCCCTAATGACTTCCTCAATTGAGTCATTGACTCAAATTTTATTATGATCCTAAATTGTGGCCATCTCGATCTTTATATGGTTTTATTAATAGATTAGATGGACGAGGCACTAATCATTGAGTATTCTTTTTTGATGCCTTGATGGCATTTTGAATTGTATAAATTATTTTAAGATTTAGCGGCCTCTGTCTCATTGACCGGCTTTAGTCTAAAAAATGTTTGTTTCTCCATTTTCTCTGTCTCTAACAACTCTGTTGGTAAAATATGCCCCGTTTACAAGATCTGAATTCTTAATAGGTATAGTGAGATGGTGAAGGCTGTTACAATCTGAGTTGTTATCACCTGATTCAAACTAAGATGATATTCTGCAGGACTTTGGGAATTTTTTGGTCATCTTAAGTTTATGAACTTTATATCTTACAAACTTCTTACAACCATTGTAGACCATTCTATCGTTCTCATGCAATCTTAAAATCCTGCTGTCTATCATTTCTCAATAACTTTGTCGTTATTTGTTGCAGACATATTCATGTGATGATATGTGGAGGCCTTCATTGGATATTATCTTGTGTTGTTTCGACCTGAGTTCACTTGCCAGGGGCTACAGCTTGGTTCATCTCCCTGGGTGCAATCTCTCTTTGAATTTGTGTTGATGCTGTTGTAGGATTCGACAATGTAG

mRNA sequence

ATGTCGATTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGGGTCACCATCCAAGATGGTCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCTCCAGCTAAGGGTAAAAAGACTAATGAGGAACGCGACGAGCGTCGCACCCTTGGGCTTGTTCTTCTTCGCGGCGAGGAGGTCATTTCCATGACTGTTGAGGGTCCACCACCTGCTGAAGAGTCCCGTGCTAAGGCCGTCAATGCTGCGGCTATGGCTGGGCCTGGTATTGGTCGTGCCGCTGGGAGGGGTATCCCGACTGCTCCTCTTGTTCAGGCTCAGCCTGGTCTTGCTGGGCCAGTTCGTGGAGTGGGTGGACCAGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCACAGCTGTCCGCTCCGCCCATGACATATCCAGCTGCCCCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCAGGACAAGCTCCACCTCCGGTTGGGAGAGGAATGCCTCCGCCGGGGCCTCCGCCACAGTTCTCTGCAGCAAGACCAGGGGGAGCTCCGCCACAGCCATTCCCAGTTCCTCCTCAATTTGCTCAGAGACCCATGGGACCTCCACCAACCGGGCAGGTGATGAGGGGACCGCCACCCCCACCCAGACCTGGAATGCCTGCGCCCCCGCCTCGACCGGGGATGCCTCCTCCACCCGGTGGGGCAGTTCCTATTTACGGACCACCTCGTCCTGGCATGCCGCCTCCACCCGCCCCACAAAATCAGCAGCAAAATCAACAGCAATATTCCTCAAGGCAGACATATTCATGTGATGATATGTGGAGGCCTTCATTGGATATTATCTTGTGTTGTTTCGACCTGAGTTCACTTGCCAGGGGCTACAGCTTGGATTCGACAATGTAG

Coding sequence (CDS)

ATGTCGATTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGGGTCACCATCCAAGATGGTCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCTCCAGCTAAGGGTAAAAAGACTAATGAGGAACGCGACGAGCGTCGCACCCTTGGGCTTGTTCTTCTTCGCGGCGAGGAGGTCATTTCCATGACTGTTGAGGGTCCACCACCTGCTGAAGAGTCCCGTGCTAAGGCCGTCAATGCTGCGGCTATGGCTGGGCCTGGTATTGGTCGTGCCGCTGGGAGGGGTATCCCGACTGCTCCTCTTGTTCAGGCTCAGCCTGGTCTTGCTGGGCCAGTTCGTGGAGTGGGTGGACCAGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCACAGCTGTCCGCTCCGCCCATGACATATCCAGCTGCCCCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCAGGACAAGCTCCACCTCCGGTTGGGAGAGGAATGCCTCCGCCGGGGCCTCCGCCACAGTTCTCTGCAGCAAGACCAGGGGGAGCTCCGCCACAGCCATTCCCAGTTCCTCCTCAATTTGCTCAGAGACCCATGGGACCTCCACCAACCGGGCAGGTGATGAGGGGACCGCCACCCCCACCCAGACCTGGAATGCCTGCGCCCCCGCCTCGACCGGGGATGCCTCCTCCACCCGGTGGGGCAGTTCCTATTTACGGACCACCTCGTCCTGGCATGCCGCCTCCACCCGCCCCACAAAATCAGCAGCAAAATCAACAGCAATATTCCTCAAGGCAGACATATTCATGTGATGATATGTGGAGGCCTTCATTGGATATTATCTTGTGTTGTTTCGACCTGAGTTCACTTGCCAGGGGCTACAGCTTGGATTCGACAATGTAG

Protein sequence

MSISKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQYSSRQTYSCDDMWRPSLDIILCCFDLSSLARGYSLDSTM

Homology

[Close]

BLAST of Cp4.1LG10g06550 vs. ExPASy Swiss-Prot
Match: Q9N1Q0 (Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii OX=9315 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 9.4e-45
Identity = 132/267 (49.44%), Postives = 158/267 (59.18%), Query Frame = 0


Query: 4   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 63
           SKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+
Sbjct: 7   SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA--EREEK 66

Query: 64  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-APLVQAQ 123
           R LGLVLLRGE ++SMTVEGPPP +   A+   + A  GPGIGRAAGRG+P   P+ QA 
Sbjct: 67  RVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLSGAAGGPGIGRAAGRGVPAGVPMPQAP 126

Query: 124 PGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPV 183
            GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+
Sbjct: 127 AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQHPPGR-----GGPPPPM 186

Query: 184 GRGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAP 243
           GRG PPPG                    PP   + PMG PPTG        PP  G P  
Sbjct: 187 GRGRPPPG-----------------MMAPPPGMRPPMG-PPTGM-------PPGRGAPMG 238

Query: 244 PPRPGMPPPPGGAVPIYGPPRPGMPPP 270
            P PGM PPP G   + GPP PGM PP
Sbjct: 247 IPPPGMRPPPPG---MRGPPPPGMRPP 238

[Close]

BLAST of Cp4.1LG10g06550 vs. ExPASy Swiss-Prot
Match: P14678 (Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens OX=9606 GN=SNRPB PE=1 SV=2)

HSP 1 Score: 179.5 bits (454), Expect = 6.1e-44
Identity = 135/252 (53.57%), Postives = 158/252 (62.70%), Query Frame = 0


Query: 4   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 63
           SKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+
Sbjct: 7   SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA--EREEK 66

Query: 64  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-APLVQAQ 123
           R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   P+ QA 
Sbjct: 67  RVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAP 126

Query: 124 PGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPV 183
            GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+
Sbjct: 127 AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----GGPPPPM 186

Query: 184 GRGMPPP---GPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGM 243
           GRG PPP   GPPP     RP   P  P  +PP     PMG PP G  MR    PP PGM
Sbjct: 187 GRGAPPPGMMGPPP---GMRPPMGP--PMGIPPG-RGTPMGMPPPG--MR----PPPPGM 238

Query: 244 PAPPPRPGMPPP 252
             PPP PGM PP
Sbjct: 247 RGPPP-PGMRPP 238

[Close]

BLAST of Cp4.1LG10g06550 vs. ExPASy Swiss-Prot
Match: Q9TU67 (Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus europaeus OX=9365 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.4e-43
Identity = 134/252 (53.17%), Postives = 158/252 (62.70%), Query Frame = 0


Query: 4   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 63
           SKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+
Sbjct: 7   SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA--EREEK 66

Query: 64  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-APLVQAQ 123
           R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   P+ QA 
Sbjct: 67  RVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAP 126

Query: 124 PGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPV 183
            GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+
Sbjct: 127 AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----GGPPPPM 186

Query: 184 GRGMPPP---GPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGM 243
           GRG PPP   GPPP     RP   P  P  +PP     PMG PP G  MR    PP PGM
Sbjct: 187 GRGAPPPGMMGPPP---GMRPPMGP--PMGIPPG-RGTPMGMPPPG--MR----PPPPGM 238

Query: 244 PAPPPRPGMPPP 252
             PPP PG+ PP
Sbjct: 247 RGPPP-PGLRPP 238

[Close]

BLAST of Cp4.1LG10g06550 vs. ExPASy Swiss-Prot
Match: Q58DW4 (Small nuclear ribonucleoprotein-associated protein B' OS=Bos taurus OX=9913 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.0e-43
Identity = 134/252 (53.17%), Postives = 157/252 (62.30%), Query Frame = 0


Query: 4   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 63
           SKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+
Sbjct: 7   SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA--EREEK 66

Query: 64  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-APLVQAQ 123
           R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   P+ QA 
Sbjct: 67  RVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAP 126

Query: 124 PGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPV 183
            GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+        PPP+
Sbjct: 127 AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----AGPPPPM 186

Query: 184 GRGMPPP---GPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGM 243
           GRG PPP   GPPP     RP   P  P  +PP     PMG PP G  MR    PP PGM
Sbjct: 187 GRGAPPPGMMGPPP---GMRPPMGP--PMGIPPG-RGTPMGMPPPG--MR----PPPPGM 238

Query: 244 PAPPPRPGMPPP 252
             PPP PGM PP
Sbjct: 247 RGPPP-PGMRPP 238

[Close]

BLAST of Cp4.1LG10g06550 vs. ExPASy Swiss-Prot
Match: Q9PV94 (Small nuclear ribonucleoprotein-associated protein B' OS=Gallus gallus OX=9031 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.0e-42
Identity = 133/252 (52.78%), Postives = 158/252 (62.70%), Query Frame = 0


Query: 4   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 63
           SKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+
Sbjct: 7   SKMLQHIDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ--PEREEK 66

Query: 64  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-APLVQAQ 123
           R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPG+GRAAGRG+P  AP+ QA 
Sbjct: 67  RVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGAPMPQAP 126

Query: 124 PGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPV 183
            GLAGPVRGVGGP+  +M PQ         +A   +   AP    PG+     G  PPP+
Sbjct: 127 AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYTPGR-----GGPPPPM 186

Query: 184 GRGMPPP---GPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGM 243
            RG PPP   GPPP     RP   PP   P P + A  PMG PP G  MR    PP PGM
Sbjct: 187 SRGAPPPGMMGPPP---GMRPPMGPPMGMP-PGRGA--PMGMPPPG--MR----PPPPGM 238

Query: 244 PAPPPRPGMPPP 252
             PPP PGM PP
Sbjct: 247 RGPPP-PGMRPP 238

[Close]

BLAST of Cp4.1LG10g06550 vs. NCBI nr
Match: XP_022925730.1 (small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata] >XP_023544574.1 small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita pepo subsp. pepo] >KAG6581498.1 Small nuclear ribonucleoprotein-associated protein B', partial [Cucurbita argyrosperma subsp. sororia] >KAG7034787.1 Small nuclear ribonucleoprotein-associated protein B', partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 516 bits (1328), Expect = 6.36e-183
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0


Query: 4   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 63
           SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER
Sbjct: 7   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 66

Query: 64  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 123
           RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP
Sbjct: 67  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 126

Query: 124 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVG 183
           GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVG
Sbjct: 127 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVG 186

Query: 184 RGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP 243
           RGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP
Sbjct: 187 RGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP 246

Query: 244 PRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 281
           PRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ
Sbjct: 247 PRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 284

[Close]

BLAST of Cp4.1LG10g06550 vs. NCBI nr
Match: XP_022977653.1 (small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita maxima])

HSP 1 Score: 509 bits (1312), Expect = 1.74e-180
Identity = 274/278 (98.56%), Postives = 277/278 (99.64%), Query Frame = 0


Query: 4   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 63
           SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN+ERDER
Sbjct: 7   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNDERDER 66

Query: 64  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 123
           RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP
Sbjct: 67  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 126

Query: 124 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVG 183
           GLAGPVRGVGGPAPGMMQPQISRPP+PQLSAPPM+YPAAPVIRPPGQMPMFPGQAPPPVG
Sbjct: 127 GLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMSYPAAPVIRPPGQMPMFPGQAPPPVG 186

Query: 184 RGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP 243
           RGMPPPGPPPQFSAARPGGAPPQPF VPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP
Sbjct: 187 RGMPPPGPPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP 246

Query: 244 PRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 281
           PRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ
Sbjct: 247 PRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 284

[Close]

BLAST of Cp4.1LG10g06550 vs. NCBI nr
Match: XP_038882444.1 (small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida] >XP_038882445.1 small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida])

HSP 1 Score: 509 bits (1312), Expect = 1.74e-180
Identity = 275/278 (98.92%), Postives = 276/278 (99.28%), Query Frame = 0


Query: 4   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 63
           SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER
Sbjct: 7   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 66

Query: 64  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 123
           RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP
Sbjct: 67  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 126

Query: 124 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVG 183
           GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVG
Sbjct: 127 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVG 186

Query: 184 RGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP 243
           RGMPPP PPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP
Sbjct: 187 RGMPPPVPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP 246

Query: 244 PRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 281
           PRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Sbjct: 247 PRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of Cp4.1LG10g06550 vs. NCBI nr
Match: KAA0052454.1 (small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. makuwa] >TYK13368.1 small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. makuwa])

HSP 1 Score: 506 bits (1304), Expect = 2.68e-179
Identity = 273/278 (98.20%), Postives = 275/278 (98.92%), Query Frame = 0


Query: 4   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 63
           SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER
Sbjct: 5   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 64

Query: 64  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 123
           RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP
Sbjct: 65  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 124

Query: 124 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVG 183
           GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+G
Sbjct: 125 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIG 184

Query: 184 RGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP 243
           RGMPPP PPPQFSAARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP
Sbjct: 185 RGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP 244

Query: 244 PRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 281
           PRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Sbjct: 245 PRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 282

[Close]

BLAST of Cp4.1LG10g06550 vs. NCBI nr
Match: XP_008439504.1 (PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo])

HSP 1 Score: 506 bits (1304), Expect = 2.88e-179
Identity = 273/278 (98.20%), Postives = 275/278 (98.92%), Query Frame = 0


Query: 4   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 63
           SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER
Sbjct: 7   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 66

Query: 64  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 123
           RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP
Sbjct: 67  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 126

Query: 124 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVG 183
           GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+G
Sbjct: 127 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIG 186

Query: 184 RGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP 243
           RGMPPP PPPQFSAARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP
Sbjct: 187 RGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP 246

Query: 244 PRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 281
           PRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Sbjct: 247 PRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of Cp4.1LG10g06550 vs. ExPASy TrEMBL
Match: A0A6J1EJ14 (Small nuclear ribonucleoprotein-associated protein OS=Cucurbita moschata OX=3662 GN=LOC111433057 PE=3 SV=1)

HSP 1 Score: 516 bits (1328), Expect = 3.08e-183
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0


Query: 4   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 63
           SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER
Sbjct: 7   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 66

Query: 64  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 123
           RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP
Sbjct: 67  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 126

Query: 124 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVG 183
           GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVG
Sbjct: 127 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVG 186

Query: 184 RGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP 243
           RGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP
Sbjct: 187 RGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP 246

Query: 244 PRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 281
           PRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ
Sbjct: 247 PRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 284

[Close]

BLAST of Cp4.1LG10g06550 vs. ExPASy TrEMBL
Match: A0A6J1IQN3 (Small nuclear ribonucleoprotein-associated protein OS=Cucurbita maxima OX=3661 GN=LOC111477902 PE=3 SV=1)

HSP 1 Score: 509 bits (1312), Expect = 8.43e-181
Identity = 274/278 (98.56%), Postives = 277/278 (99.64%), Query Frame = 0


Query: 4   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 63
           SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN+ERDER
Sbjct: 7   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNDERDER 66

Query: 64  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 123
           RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP
Sbjct: 67  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 126

Query: 124 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVG 183
           GLAGPVRGVGGPAPGMMQPQISRPP+PQLSAPPM+YPAAPVIRPPGQMPMFPGQAPPPVG
Sbjct: 127 GLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMSYPAAPVIRPPGQMPMFPGQAPPPVG 186

Query: 184 RGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP 243
           RGMPPPGPPPQFSAARPGGAPPQPF VPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP
Sbjct: 187 RGMPPPGPPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP 246

Query: 244 PRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 281
           PRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ
Sbjct: 247 PRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 284

[Close]

BLAST of Cp4.1LG10g06550 vs. ExPASy TrEMBL
Match: A0A5A7UAP6 (Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009950 PE=3 SV=1)

HSP 1 Score: 506 bits (1304), Expect = 1.30e-179
Identity = 273/278 (98.20%), Postives = 275/278 (98.92%), Query Frame = 0


Query: 4   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 63
           SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER
Sbjct: 5   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 64

Query: 64  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 123
           RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP
Sbjct: 65  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 124

Query: 124 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVG 183
           GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+G
Sbjct: 125 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIG 184

Query: 184 RGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP 243
           RGMPPP PPPQFSAARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP
Sbjct: 185 RGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP 244

Query: 244 PRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 281
           PRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Sbjct: 245 PRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 282

[Close]

BLAST of Cp4.1LG10g06550 vs. ExPASy TrEMBL
Match: A0A1S3AZK2 (Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo OX=3656 GN=LOC103484284 PE=3 SV=1)

HSP 1 Score: 506 bits (1304), Expect = 1.39e-179
Identity = 273/278 (98.20%), Postives = 275/278 (98.92%), Query Frame = 0


Query: 4   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 63
           SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER
Sbjct: 7   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 66

Query: 64  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 123
           RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP
Sbjct: 67  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 126

Query: 124 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVG 183
           GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+G
Sbjct: 127 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIG 186

Query: 184 RGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP 243
           RGMPPP PPPQFSAARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP
Sbjct: 187 RGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP 246

Query: 244 PRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 281
           PRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Sbjct: 247 PRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of Cp4.1LG10g06550 vs. ExPASy TrEMBL
Match: A0A0A0KPA9 (Small nuclear ribonucleoprotein-associated protein OS=Cucumis sativus OX=3659 GN=Csa_6G526300 PE=3 SV=1)

HSP 1 Score: 504 bits (1299), Expect = 8.05e-179
Identity = 271/278 (97.48%), Postives = 274/278 (98.56%), Query Frame = 0


Query: 4   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 63
           SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER
Sbjct: 7   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 66

Query: 64  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 123
           RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP
Sbjct: 67  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 126

Query: 124 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVG 183
           GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQAPPP+G
Sbjct: 127 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIG 186

Query: 184 RGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP 243
           RGMPPP PPPQFS ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP
Sbjct: 187 RGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPP 246

Query: 244 PRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 281
           PRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Sbjct: 247 PRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of Cp4.1LG10g06550 vs. TAIR 10
Match: AT4G20440.1 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 330.1 bits (845), Expect = 2.0e-90
Identity = 209/279 (74.91%), Postives = 221/279 (79.21%), Query Frame = 0


Query: 4   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 63
           SKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++R
Sbjct: 7   SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDR 66

Query: 64  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 123
           RTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPGIGRAAGRG+PT PLVQAQP
Sbjct: 67  RTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGPLVQAQP 126

Query: 124 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPP 183
           GL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  P
Sbjct: 127 GLSGPVRGVGGPAPGMMQPQISRP--PQLSAP-------PIIRPPGQMLPPPPFGGQG-P 186

Query: 184 PVGRGMPPPGPPPQFSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPG 243
           P+GRG PPP         RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP   
Sbjct: 187 PMGRGPPPP------YGMRP---PPQQFSGPPPPQYGQRPMIPPP-GGMMRGPPPPPHGM 246

Query: 244 MPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQ 278
              PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Sbjct: 247 QGPPPPRPGMPPAPGG----FAPPRPGMP----PHNQQQ 257

[Close]

BLAST of Cp4.1LG10g06550 vs. TAIR 10
Match: AT4G20440.2 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 330.1 bits (845), Expect = 2.0e-90
Identity = 209/279 (74.91%), Postives = 221/279 (79.21%), Query Frame = 0


Query: 4   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 63
           SKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++R
Sbjct: 7   SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDR 66

Query: 64  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 123
           RTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPGIGRAAGRG+PT PLVQAQP
Sbjct: 67  RTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGPLVQAQP 126

Query: 124 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPP 183
           GL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  P
Sbjct: 127 GLSGPVRGVGGPAPGMMQPQISRP--PQLSAP-------PIIRPPGQMLPPPPFGGQG-P 186

Query: 184 PVGRGMPPPGPPPQFSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPG 243
           P+GRG PPP         RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP   
Sbjct: 187 PMGRGPPPP------YGMRP---PPQQFSGPPPPQYGQRPMIPPP-GGMMRGPPPPPHGM 246

Query: 244 MPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQ 278
              PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Sbjct: 247 QGPPPPRPGMPPAPGG----FAPPRPGMP----PHNQQQ 257

[Close]

BLAST of Cp4.1LG10g06550 vs. TAIR 10
Match: AT4G20440.3 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 330.1 bits (845), Expect = 2.0e-90
Identity = 209/279 (74.91%), Postives = 221/279 (79.21%), Query Frame = 0


Query: 4   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 63
           SKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++R
Sbjct: 7   SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDR 66

Query: 64  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 123
           RTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPGIGRAAGRG+PT PLVQAQP
Sbjct: 67  RTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGPLVQAQP 126

Query: 124 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPP 183
           GL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  P
Sbjct: 127 GLSGPVRGVGGPAPGMMQPQISRP--PQLSAP-------PIIRPPGQMLPPPPFGGQG-P 186

Query: 184 PVGRGMPPPGPPPQFSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPG 243
           P+GRG PPP         RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP   
Sbjct: 187 PMGRGPPPP------YGMRP---PPQQFSGPPPPQYGQRPMIPPP-GGMMRGPPPPPHGM 246

Query: 244 MPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQ 278
              PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Sbjct: 247 QGPPPPRPGMPPAPGG----FAPPRPGMP----PHNQQQ 257

[Close]

BLAST of Cp4.1LG10g06550 vs. TAIR 10
Match: AT4G20440.4 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 330.1 bits (845), Expect = 2.0e-90
Identity = 209/279 (74.91%), Postives = 221/279 (79.21%), Query Frame = 0


Query: 4   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 63
           SKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++R
Sbjct: 7   SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDR 66

Query: 64  RTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQP 123
           RTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPGIGRAAGRG+PT PLVQAQP
Sbjct: 67  RTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGPLVQAQP 126

Query: 124 GLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPP 183
           GL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  P
Sbjct: 127 GLSGPVRGVGGPAPGMMQPQISRP--PQLSAP-------PIIRPPGQMLPPPPFGGQG-P 186

Query: 184 PVGRGMPPPGPPPQFSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPG 243
           P+GRG PPP         RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP   
Sbjct: 187 PMGRGPPPP------YGMRP---PPQQFSGPPPPQYGQRPMIPPP-GGMMRGPPPPPHGM 246

Query: 244 MPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQ 278
              PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Sbjct: 247 QGPPPPRPGMPPAPGG----FAPPRPGMP----PHNQQQ 257

[Close]

BLAST of Cp4.1LG10g06550 vs. TAIR 10
Match: AT5G44500.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 306.6 bits (784), Expect = 2.3e-83
Identity = 193/279 (69.18%), Postives = 211/279 (75.63%), Query Frame = 0


Query: 4   SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKTNEERDE 63
           SKMLQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG KKTNEER+E
Sbjct: 7   SKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEEREE 66

Query: 64  RRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQ 123
           RRTLGLVLLRGEEVISMTVEGPPP EESRAK+ +  A+AGPGIGRAAGRG+PT PLVQAQ
Sbjct: 67  RRTLGLVLLRGEEVISMTVEGPPPPEESRAKSGSVTAVAGPGIGRAAGRGVPTGPLVQAQ 126

Query: 124 PGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPV 183
           PGL+GPVRG+GGPAPGMMQPQISRPP               +IRPPGQMP      PP  
Sbjct: 127 PGLSGPVRGIGGPAPGMMQPQISRPP--------------QIIRPPGQMP----PQPPFA 186

Query: 184 GRGMPPPGPPPQFSAARPGGAPPQPFPVPPQFA--QRPMGPPPTGQVMRGPPPPPRPGMP 243
           G+G    GPPP +     G  PP P P PPQ+   QRPM  PP G +MRGPPPP   GM 
Sbjct: 187 GQG----GPPPPY-----GMRPPYPGPPPPQYGGQQRPMMIPPPGGMMRGPPPP--HGMQ 246

Query: 244 APPP-RPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQN 279
            PPP RPGMPPP  G  P++ PP PGMPP P   + QQ+
Sbjct: 247 GPPPSRPGMPPP--GGAPMFAPPHPGMPPAPPNHHNQQH 254

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g06550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9N1Q0	9.4e-45	49.44	Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii OX=931...	[more]
P14678	6.1e-44	53.57	Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens OX=...	[more]
Q9TU67	1.4e-43	53.17	Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus europaeus OX=...	[more]
Q58DW4	3.0e-43	53.17	Small nuclear ribonucleoprotein-associated protein B' OS=Bos taurus OX=9913 GN=S...	[more]
Q9PV94	2.0e-42	52.78	Small nuclear ribonucleoprotein-associated protein B' OS=Gallus gallus OX=9031 G...	[more]

BLAST of Cp4.1LG10g06550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925730.1	6.36e-183	100.00	small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata] ...	[more]
XP_022977653.1	1.74e-180	98.56	small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita maxima]	[more]
XP_038882444.1	1.74e-180	98.92	small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida] >...	[more]
KAA0052454.1	2.68e-179	98.20	small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. ...	[more]
XP_008439504.1	2.88e-179	98.20	PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis...	[more]

BLAST of Cp4.1LG10g06550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJ14	3.08e-183	100.00	Small nuclear ribonucleoprotein-associated protein OS=Cucurbita moschata OX=3662...	[more]
A0A6J1IQN3	8.43e-181	98.56	Small nuclear ribonucleoprotein-associated protein OS=Cucurbita maxima OX=3661 G...	[more]
A0A5A7UAP6	1.30e-179	98.20	Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo var. makuwa O...	[more]
A0A1S3AZK2	1.39e-179	98.20	Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0KPA9	8.05e-179	97.48	Small nuclear ribonucleoprotein-associated protein OS=Cucumis sativus OX=3659 GN...	[more]

BLAST of Cp4.1LG10g06550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20440.1	2.0e-90	74.91	small nuclear ribonucleoprotein associated protein B	[more]
AT4G20440.2	2.0e-90	74.91	small nuclear ribonucleoprotein associated protein B	[more]
AT4G20440.3	2.0e-90	74.91	small nuclear ribonucleoprotein associated protein B	[more]
AT4G20440.4	2.0e-90	74.91	small nuclear ribonucleoprotein associated protein B	[more]
AT5G44500.1	2.3e-83	69.18	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 4..81 e-value: 4.5E-22 score: 89.3
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 6..80 e-value: 9.7E-19 score: 66.8
None	No IPR available	GENE3D	2.30.30.100		coord: 2..88 e-value: 1.9E-32 score: 112.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..287
None	No IPR available	PANTHER	PTHR10701	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N	coord: 4..256
None	No IPR available	PANTHER	PTHR10701:SF14	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN	coord: 4..256
None	No IPR available	CDD	cd01717	Sm_B	coord: 4..82 e-value: 9.99026E-52 score: 163.491
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 4..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g06550.1	Cp4.1LG10g06550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0071004	U2-type prespliceosome
cellular_component	GO:0005687	U4 snRNP
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005682	U5 snRNP
molecular_function	GO:0003723	RNA binding