Cp4.1LG10g06470 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g06470
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG10: 332292 .. 332791 (+)
RNA-Seq Expression	Cp4.1LG10g06470
Synteny	Cp4.1LG10g06470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAATTCCGATCAAACCAGTAGCGGCGATGGCCGTGTTCTTGCCACTGATCGTGGCGGTCGCATCCGCGCTGGAGATACGGCCGTCGGAGCACGGGCTGGAGTTTCAGAGCCCTCCGCCTGCGGGAGAAAAATCGTCGCCACAGATGCGGTCGTTCTTCGTAGGAACATCGTCGCCAATTCCGGATACAACATTGCCGTTGCCGAAGGCGATGAATTCGAGCGAGGCGCCGGGATGGTGGACCCACCGTGACGGTGGAAATAAACGAGTAAGAAATGCATTATTGGTGGCGACGGCGGCTTGTGGAATTACAGGTGTCACTTTATTAGTGGGTTCTACGCTATTCTACATTTATAAGGTAAAAAATCAAACACCATTGCCATTATCTTCAAATAATAATCACAAATAAACATATCAACAACAATCATGATCCCTTACTTTGTTCATCTCTTGAAGTAGCGATCAATTTCCCAGTTCCAATTTGTTCTTACCGTATAA

mRNA sequence

ATGATAATTCCGATCAAACCAGTAGCGGCGATGGCCGTGTTCTTGCCACTGATCGTGGCGGTCGCATCCGCGCTGGAGATACGGCCGTCGGAGCACGGGCTGGAGTTTCAGAGCCCTCCGCCTGCGGGAGAAAAATCGTCGCCACAGATGCGGTCGTTCTTCGTAGGAACATCGTCGCCAATTCCGGATACAACATTGCCGTTGCCGAAGGCGATGAATTCGAGCGAGGCGCCGGGATGGTGGACCCACCGTGACGGTGGAAATAAACGAGTAAGAAATGCATTATTGGTGGCGACGGCGGCTTGTGGAATTACAGGTGTCACTTTATTAGTGGGTTCTACGCTATTCTACATTTATAAGCGATCAATTTCCCAGTTCCAATTTGTTCTTACCGTATAA

Coding sequence (CDS)

ATGATAATTCCGATCAAACCAGTAGCGGCGATGGCCGTGTTCTTGCCACTGATCGTGGCGGTCGCATCCGCGCTGGAGATACGGCCGTCGGAGCACGGGCTGGAGTTTCAGAGCCCTCCGCCTGCGGGAGAAAAATCGTCGCCACAGATGCGGTCGTTCTTCGTAGGAACATCGTCGCCAATTCCGGATACAACATTGCCGTTGCCGAAGGCGATGAATTCGAGCGAGGCGCCGGGATGGTGGACCCACCGTGACGGTGGAAATAAACGAGTAAGAAATGCATTATTGGTGGCGACGGCGGCTTGTGGAATTACAGGTGTCACTTTATTAGTGGGTTCTACGCTATTCTACATTTATAAGCGATCAATTTCCCAGTTCCAATTTGTTCTTACCGTATAA

Protein sequence

MIIPIKPVAAMAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPQMRSFFVGTSSPIPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYKRSISQFQFVLTV

Homology

[Close]

BLAST of Cp4.1LG10g06470 vs. NCBI nr
Match: KAG6581475.1 (hypothetical protein SDJN03_21477, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034767.1 hypothetical protein SDJN02_04498, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 231 bits (589), Expect = 5.67e-76
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MIIPIKPVAAMAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPQMRSFFVGTSSP 60
           MIIPIKPVAAMAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSP+MRSFFVGTSSP
Sbjct: 1   MIIPIKPVAAMAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSP 60

Query: 61  IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 120
           IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK
Sbjct: 61  IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 120

[Close]

BLAST of Cp4.1LG10g06470 vs. NCBI nr
Match: XP_022925668.1 (uncharacterized protein LOC111433017 [Cucurbita moschata])

HSP 1 Score: 229 bits (585), Expect = 2.00e-74
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MIIPIKPVAAMAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPQMRSFFVGTSSP 60
           MIIPIKPVAAM VFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSP+MRSFFVGTSSP
Sbjct: 57  MIIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSP 116

Query: 61  IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 120
           IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK
Sbjct: 117 IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 176

[Close]

BLAST of Cp4.1LG10g06470 vs. NCBI nr
Match: XP_023543933.1 (uncharacterized protein LOC111803654 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 217 bits (553), Expect = 1.75e-70
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 11  MAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPQMRSFFVGTSSPIPDTTLPLPK 70
           MAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPQMRSFFVGTSSPIPDTTLPLPK
Sbjct: 1   MAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPQMRSFFVGTSSPIPDTTLPLPK 60

Query: 71  AMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 120
           AMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK
Sbjct: 61  AMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 110

[Close]

BLAST of Cp4.1LG10g06470 vs. NCBI nr
Match: XP_023518243.1 (uncharacterized protein LOC111781779 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193 bits (491), Expect = 6.59e-61
Identity = 98/118 (83.05%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 3   IPIKPVAAMAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPQMRSFFVGTSSPIP 62
           I IK +AAMAV+L  IVA+A+ALEIRPSEHGLEFQSPP AG+KSSP+MRSFF GTSSP P
Sbjct: 2   ITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPTP 61

Query: 63  DTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 120
           +  LPLPKAMNSSEAPGWWTHRDGG+KR+RNALLVATAACGITGVTLLVGSTL+YI+K
Sbjct: 62  EVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFK 119

[Close]

BLAST of Cp4.1LG10g06470 vs. NCBI nr
Match: XP_023003567.1 (uncharacterized protein LOC111497130 [Cucurbita maxima])

HSP 1 Score: 190 bits (483), Expect = 1.09e-59
Identity = 96/118 (81.36%), Postives = 108/118 (91.53%), Query Frame = 0


Query: 3   IPIKPVAAMAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPQMRSFFVGTSSPIP 62
           I IK +AAMAV+L  IVA+ +ALEIRPSEHGLEFQSPP AG+KSSP+MRSFF GTSSP P
Sbjct: 2   ITIKSMAAMAVYLLFIVAIEAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPTP 61

Query: 63  DTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 120
           +  LPLPKAMNSSEAPGWWTHRDGG+KR+RNALLVATAACG+TGVTLLVGSTL+YI+K
Sbjct: 62  EVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGMTGVTLLVGSTLYYIFK 119

[Close]

BLAST of Cp4.1LG10g06470 vs. ExPASy TrEMBL
Match: A0A6J1EFW4 (uncharacterized protein LOC111433017 OS=Cucurbita moschata OX=3662 GN=LOC111433017 PE=4 SV=1)

HSP 1 Score: 229 bits (585), Expect = 9.68e-75
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MIIPIKPVAAMAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPQMRSFFVGTSSP 60
           MIIPIKPVAAM VFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSP+MRSFFVGTSSP
Sbjct: 57  MIIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSP 116

Query: 61  IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 120
           IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK
Sbjct: 117 IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 176

[Close]

BLAST of Cp4.1LG10g06470 vs. ExPASy TrEMBL
Match: A0A6J1KMY3 (uncharacterized protein LOC111497130 OS=Cucurbita maxima OX=3661 GN=LOC111497130 PE=4 SV=1)

HSP 1 Score: 190 bits (483), Expect = 5.28e-60
Identity = 96/118 (81.36%), Postives = 108/118 (91.53%), Query Frame = 0


Query: 3   IPIKPVAAMAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPQMRSFFVGTSSPIP 62
           I IK +AAMAV+L  IVA+ +ALEIRPSEHGLEFQSPP AG+KSSP+MRSFF GTSSP P
Sbjct: 2   ITIKSMAAMAVYLLFIVAIEAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPTP 61

Query: 63  DTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 120
           +  LPLPKAMNSSEAPGWWTHRDGG+KR+RNALLVATAACG+TGVTLLVGSTL+YI+K
Sbjct: 62  EVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGMTGVTLLVGSTLYYIFK 119

[Close]

BLAST of Cp4.1LG10g06470 vs. ExPASy TrEMBL
Match: A0A6J1EFQ9 (uncharacterized protein LOC111433768 OS=Cucurbita moschata OX=3662 GN=LOC111433768 PE=4 SV=1)

HSP 1 Score: 189 bits (481), Expect = 1.06e-59
Identity = 97/118 (82.20%), Postives = 108/118 (91.53%), Query Frame = 0


Query: 3   IPIKPVAAMAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPQMRSFFVGTSSPIP 62
           I IK +AAMAV+L  IVA+A+ALEIRPSEHGLEFQS P AG+KSSP+MRSFF GTSSP P
Sbjct: 2   ITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSLPAAGDKSSPEMRSFFGGTSSPTP 61

Query: 63  DTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 120
           +  LPLPKAMNSSEAPGWWTHRDGG+KR+RNALLVATAACGITGVTLLVGSTL+YI+K
Sbjct: 62  EVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFK 119

[Close]

BLAST of Cp4.1LG10g06470 vs. ExPASy TrEMBL
Match: A0A6J1CZN3 (uncharacterized protein LOC111015729 OS=Momordica charantia OX=3673 GN=LOC111015729 PE=4 SV=1)

HSP 1 Score: 182 bits (462), Expect = 9.17e-57
Identity = 98/122 (80.33%), Postives = 104/122 (85.25%), Query Frame = 0


Query: 3   IPIKPVAAMAVFLPLIVAV----ASALEIRPSEHGLEFQSPPPAGEKSSPQMRSFFVGTS 62
           IPIK  AAMAV LPLIVAV     +ALEIRPSEHGLEFQSPPPAG+KSSP+M SFF G S
Sbjct: 2   IPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRS 61

Query: 63  SPIPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYI 120
           SP PD  LPLPKAMNSSEAPGWWT RDGG+ R+RNALLVATAA GITGVTLLVGS LFY+
Sbjct: 62  SPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLVATAAFGITGVTLLVGSVLFYV 121

[Close]

BLAST of Cp4.1LG10g06470 vs. ExPASy TrEMBL
Match: A0A0A0KM65 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525480 PE=4 SV=1)

HSP 1 Score: 179 bits (453), Expect = 1.89e-55
Identity = 87/118 (73.73%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 3   IPIKPVAAMAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPQMRSFFVGTSSPIP 62
           IPIK  AA+  F  LI ++A+  EIRPSEHGLEFQSPPP G+KSSP+MRSFF G +SP P
Sbjct: 2   IPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPPVGDKSSPEMRSFFGGIASPTP 61

Query: 63  DTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 120
           +  LP+PK +NSSE+PGWW H DGGNKR+RNALLVATAACGITGVTLLVGSTLFYI+K
Sbjct: 62  EVALPIPKTLNSSESPGWWNHHDGGNKRLRNALLVATAACGITGVTLLVGSTLFYIFK 119

[Close]

BLAST of Cp4.1LG10g06470 vs. TAIR 10
Match: AT4G21740.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30515.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 4.9e-11
Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 14  FLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSP--QMRSFF--VGTSSPIPDTTLPLP 73
           FL +    + A E+RPS+HGL++Q   P  E  SP  +M+SFF    +SSP P     LP
Sbjct: 22  FLVIFTGNSLAGELRPSDHGLQYQFSSPPTESHSPPGKMKSFFGDSHSSSPPPSHPQLLP 81

Query: 74  K--AMNSSEAPGWWTHRDGGNKR----VRNALLVATAACGITGVTLLVGSTLFYIYK 121
           K  A +  +   WW  RDG   R    +R+  L A+  CG++GV LLV  TL Y ++
Sbjct: 82  KATAADGGDDDSWW--RDGAGIRRDHVMRHVFLAASIICGVSGVALLVVFTLIYFFR 136

[Close]

BLAST of Cp4.1LG10g06470 vs. TAIR 10
Match: AT1G30515.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21740.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 6.2e-06
Identity = 39/117 (33.33%), Postives = 65/117 (55.56%), Query Frame = 0


Query: 7   PVAAMAVFLPLIV--AVASALEIRPSEHGLEFQSPPPAGEKSSPQMRSFFVGTSSPIPDT 66
           P+ +M +   +++   + +A E+RPS+HGLE+   P  GE S  +M SFF G  S    T
Sbjct: 11  PLISMLIMFIIVLESTIINARELRPSDHGLEYYYEP--GESS--EMTSFF-GPPSSNDLT 70

Query: 67  TLPLPKAM---NSSEAPGWWTHRDGGNKRVRN-ALLVATAACGITGVTLLVGSTLFY 118
           ++  P +    ++ ++P     +D  + RV N  L+V +  CG++GV L+V S L Y
Sbjct: 71  SISSPSSSILPSAVKSPMKTLSKDQDDDRVMNHVLVVGSLVCGLSGVALMVASALIY 122

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g06470 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG10g06470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581475.1	5.67e-76	99.17	hypothetical protein SDJN03_21477, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022925668.1	2.00e-74	98.33	uncharacterized protein LOC111433017 [Cucurbita moschata]	[more]
XP_023543933.1	1.75e-70	100.00	uncharacterized protein LOC111803654 [Cucurbita pepo subsp. pepo]	[more]
XP_023518243.1	6.59e-61	83.05	uncharacterized protein LOC111781779 [Cucurbita pepo subsp. pepo]	[more]
XP_023003567.1	1.09e-59	81.36	uncharacterized protein LOC111497130 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG10g06470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EFW4	9.68e-75	98.33	uncharacterized protein LOC111433017 OS=Cucurbita moschata OX=3662 GN=LOC1114330...	[more]
A0A6J1KMY3	5.28e-60	81.36	uncharacterized protein LOC111497130 OS=Cucurbita maxima OX=3661 GN=LOC111497130...	[more]
A0A6J1EFQ9	1.06e-59	82.20	uncharacterized protein LOC111433768 OS=Cucurbita moschata OX=3662 GN=LOC1114337...	[more]
A0A6J1CZN3	9.17e-57	80.33	uncharacterized protein LOC111015729 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A0A0KM65	1.89e-55	73.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525480 PE=4 SV=1	[more]

BLAST of Cp4.1LG10g06470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21740.1	4.9e-11	39.32	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G30515.1	6.2e-06	33.33	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37189	CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED	coord: 8..121
None	No IPR available	PANTHER	PTHR37189:SF4	CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED	coord: 8..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g06470.1	Cp4.1LG10g06470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane