Cp4.1LG10g05970 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g05970
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionAlpha-mannosidase 3 isoform 1
LocationCp4.1LG10: 623727 .. 623942 (-)
RNA-Seq ExpressionCp4.1LG10g05970
SyntenyCp4.1LG10g05970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATAAAAAAGAAGAGCAAGAAGAAAAAGAAGAAGACGACAGCCAGGTTTGAAAGCAATGGCAATAACAATAACAAGGGAAGAGTTTTCTCCGTGATGCTCCCAAAGGGCTTTGTCCCTCCCTCTGGCTCGTCTCCTTGCCACAACCAAAACCCTCAGTCATCATCTCCCGCCTTTTACTGCCATCTCTCTGCTGCCACCCACCGCCCTTGA

mRNA sequence

ATGGCGATAAAAAAGAAGAGCAAGAAGAAAAAGAAGAAGACGACAGCCAGGTTTGAAAGCAATGGCAATAACAATAACAAGGGAAGAGTTTTCTCCGTGATGCTCCCAAAGGGCTTTGTCCCTCCCTCTGGCTCGTCTCCTTGCCACAACCAAAACCCTCAGTCATCATCTCCCGCCTTTTACTGCCATCTCTCTGCTGCCACCCACCGCCCTTGA

Coding sequence (CDS)

ATGGCGATAAAAAAGAAGAGCAAGAAGAAAAAGAAGAAGACGACAGCCAGGTTTGAAAGCAATGGCAATAACAATAACAAGGGAAGAGTTTTCTCCGTGATGCTCCCAAAGGGCTTTGTCCCTCCCTCTGGCTCGTCTCCTTGCCACAACCAAAACCCTCAGTCATCATCTCCCGCCTTTTACTGCCATCTCTCTGCTGCCACCCACCGCCCTTGA

Protein sequence

MAIKKKSKKKKKKTTARFESNGNNNNKGRVFSVMLPKGFVPPSGSSPCHNQNPQSSSPAFYCHLSAATHRP
Homology
BLAST of Cp4.1LG10g05970 vs. NCBI nr
Match: KAG7034719.1 (hypothetical protein SDJN02_04449, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131 bits (330), Expect = 2.62e-38
Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 0

Query: 1  MAIKKKSKKKKKKTTARFESNGNNNNKGRVFSVMLPKGFVPPSGSSPCHNQNPQSSSPAF 60
          MAIK KSKK KKKTTARFESNGNNNNKGR FSVMLPKGFVPPSGSSPCHNQ+PQSSSPAF
Sbjct: 1  MAIKNKSKKNKKKTTARFESNGNNNNKGRAFSVMLPKGFVPPSGSSPCHNQSPQSSSPAF 60

Query: 61 YCHLSAATHRP 71
          YCHLSAAT+RP
Sbjct: 61 YCHLSAATNRP 71

BLAST of Cp4.1LG10g05970 vs. NCBI nr
Match: KAG6581427.1 (hypothetical protein SDJN03_21429, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129 bits (324), Expect = 1.87e-36
Identity = 65/71 (91.55%), Postives = 67/71 (94.37%), Query Frame = 0

Query: 1   MAIKKKSKKKKKKTTARFESNGNNNNKGRVFSVMLPKGFVPPSGSSPCHNQNPQSSSPAF 60
           MAIK KSKK KKKTTARFESNGNNNNKG  FSVMLPKGFVPPSGSSPCHNQ+PQSSSPAF
Sbjct: 74  MAIKNKSKKNKKKTTARFESNGNNNNKGTAFSVMLPKGFVPPSGSSPCHNQSPQSSSPAF 133

Query: 61  YCHLSAATHRP 71
           YCHLSAAT+RP
Sbjct: 134 YCHLSAATNRP 144

BLAST of Cp4.1LG10g05970 vs. NCBI nr
Match: KAA0052545.1 (hypothetical protein E6C27_scaffold120G001480 [Cucumis melo var. makuwa] >TYK13280.1 hypothetical protein E5676_scaffold255G008990 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 4.21e-18
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 0

Query: 18  FESNGNN--NNKGRVFSVMLPKGFVPPSGSSPCHNQNPQSSSPAFYCHL 64
           F+S+ NN  N+KG  FSVMLPKGFVPPSGSSPCHN+NPQSSS AFYCHL
Sbjct: 107 FKSSNNNKKNDKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLAFYCHL 155

BLAST of Cp4.1LG10g05970 vs. NCBI nr
Match: KGN49393.1 (hypothetical protein Csa_004373 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 5.39e-16
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 23  NNNNKGRVFSVMLPKGFVPPSGSSPCHNQNPQSSSPAFYCHL 64
           N N+KG  FS MLPKGFVPPSGSSPCHN++PQSSS AFYCHL
Sbjct: 114 NKNDKGSAFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHL 155

BLAST of Cp4.1LG10g05970 vs. NCBI nr
Match: KAG7026467.1 (hypothetical protein SDJN02_10467, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.2 bits (165), Expect = 1.33e-12
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 26  NKGRVFSVMLPKGFVPPSGSSPCHNQNPQSSSPAFYCHLSA 66
           NK   FS MLPKGFVPPSGSSPCHN+NP+    AFYCHLSA
Sbjct: 80  NKATAFSAMLPKGFVPPSGSSPCHNENPEFV--AFYCHLSA 118

BLAST of Cp4.1LG10g05970 vs. ExPASy TrEMBL
Match: A0A5A7UFQ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008990 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.04e-18
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 0

Query: 18  FESNGNN--NNKGRVFSVMLPKGFVPPSGSSPCHNQNPQSSSPAFYCHL 64
           F+S+ NN  N+KG  FSVMLPKGFVPPSGSSPCHN+NPQSSS AFYCHL
Sbjct: 107 FKSSNNNKKNDKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLAFYCHL 155

BLAST of Cp4.1LG10g05970 vs. ExPASy TrEMBL
Match: A0A0A0KIK1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G523350 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.61e-16
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 23  NNNNKGRVFSVMLPKGFVPPSGSSPCHNQNPQSSSPAFYCHL 64
           N N+KG  FS MLPKGFVPPSGSSPCHN++PQSSS AFYCHL
Sbjct: 114 NKNDKGSAFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHL 155

BLAST of Cp4.1LG10g05970 vs. ExPASy TrEMBL
Match: V7BTK0 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G164500g PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.47e-12
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0

Query: 29  RVFSVMLPKGFVPPSGSSPCHNQNPQSSSPAFYCHLSA 66
           R FSVMLPKGFVPPSGSSPCHN  P S S +F+CHL+A
Sbjct: 109 RPFSVMLPKGFVPPSGSSPCHNDQPNSVSSSFHCHLTA 146

BLAST of Cp4.1LG10g05970 vs. ExPASy TrEMBL
Match: A0A6A2XAG3 (Alpha-mannosidase 3 isoform 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117032pilonHSYRG00130 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.75e-12
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 0

Query: 8   KKKKKKTTARFESNGNNNNKGRVFSVMLPKGFVPPSGSSPCHNQNPQSS-SPAFYCHLSA 67
           KK+K+K T R + N ++N K R F+VMLPKGFVPPSGSSPCHN  P S+ +    C LS 
Sbjct: 77  KKRKRKMTKRRKINMDSNFKTRPFTVMLPKGFVPPSGSSPCHNDKPDSAVAQDLICGLSG 136

Query: 68  ATHRP 71
           AT +P
Sbjct: 137 ATAKP 141

BLAST of Cp4.1LG10g05970 vs. ExPASy TrEMBL
Match: A0A444WWS8 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g100459 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.40e-12
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 0

Query: 17  RFESNGNNNNKG---------RVFSVMLPKGFVPPSGSSPCHNQNPQSSSPAFYCHLSA 66
           R ++N  N NK          R FSVMLPKGFVPPSGSSPCHN  P S+  +F+CHL++
Sbjct: 85  RNKNNNKNKNKNSLSSSSSSSRAFSVMLPKGFVPPSGSSPCHNDQPNSAYSSFHCHLTS 143

BLAST of Cp4.1LG10g05970 vs. TAIR 10
Match: AT4G18335.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 4.2e-09
Identity = 31/53 (58.49%), Postives = 36/53 (67.92%), Query Frame = 0

Query: 13  KTTARFESNGNNNNKGRVFSVMLPKGFVPPSGSSPCHNQNPQSSSPAFYCHLS 66
           K  A+  +  N   +   FSVMLPKGFVPPSGSSPCHNQNP S++  F C LS
Sbjct: 110 KMMAKKNNGLNRPVRQDTFSVMLPKGFVPPSGSSPCHNQNPNSATTLF-CDLS 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7034719.12.62e-3892.96hypothetical protein SDJN02_04449, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6581427.11.87e-3691.55hypothetical protein SDJN03_21429, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0052545.14.21e-1879.59hypothetical protein E6C27_scaffold120G001480 [Cucumis melo var. makuwa] >TYK132... [more]
KGN49393.15.39e-1680.95hypothetical protein Csa_004373 [Cucumis sativus][more]
KAG7026467.11.33e-1275.61hypothetical protein SDJN02_10467, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
A0A5A7UFQ92.04e-1879.59Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KIK12.61e-1680.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G523350 PE=4 SV=1[more]
V7BTK02.47e-1276.32Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G164500g PE=4 ... [more]
A0A6A2XAG35.75e-1256.92Alpha-mannosidase 3 isoform 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0011703... [more]
A0A444WWS86.40e-1254.24Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g100459 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G18335.14.2e-0958.49unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g05970.1Cp4.1LG10g05970.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane