Cp4.1LG10g04840 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g04840
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG10: 1185644 .. 1186291 (+)
RNA-Seq ExpressionCp4.1LG10g04840
SyntenyCp4.1LG10g04840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATGTGTGTATATATATGTGTGGGGGTTATTTAGAGGGAAATAAATGTTCCAACCCAACATATCGACATCAGTTACCTCGCAACTTATTGCTGTAAGGATGGCGACGGTTTGAATGTCCAAAAGCTGAAAAAGAATACATGCAATAATCACAAAATAATATTCCCATTTCTCCTCTCTTCATCACTGCTTCTTGTTGTTCTCCATCTTCCGCCATGGAAATGAGCTTTAGGATCACTGTGTTCTTCCTCTTCCTTCTGCTTACCCCTTCATTATGTTGTTGTTCTTCAAATGAAGGTGTGTGTGTAATTTGTGTATGATGGGTGTTACACAAATATAATGGTTGATTTAATTTTAATTTGTAGGTGGATCTGAAAATGGTGGCATGGGTTCTTCGTCAGAGGTTTATGAAATAGACTACAGAGGACCAGAGACTCACTCCTCTCATATTTCTCCTCCCCATCCCTCCCATGGAAGGCCATGGATTGTTCATCATCACCATCCTCTCCACCCTCCTCCATACCCACTCAAGGTCATTTTATTACTTATCAATCTTTTTTCTTTTTACGATTTTGTTTGTGACGATAAATATCATTCTTTCGGAGTGATGTACGAGTTAGGGTTTTGTTTATCTAGCTAGAGTAA

mRNA sequence

ATGGGTGGATCTGAAAATGGTGGCATGGGTTCTTCGTCAGAGGTTTATGAAATAGACTACAGAGGACCAGAGACTCACTCCTCTCATATTTCTCCTCCCCATCCCTCCCATGGAAGGCCATGGATTGTTCATCATCACCATCCTCTCCACCCTCCTCCATACCCACTCAAGCTAGAGTAA

Coding sequence (CDS)

ATGGGTGGATCTGAAAATGGTGGCATGGGTTCTTCGTCAGAGGTTTATGAAATAGACTACAGAGGACCAGAGACTCACTCCTCTCATATTTCTCCTCCCCATCCCTCCCATGGAAGGCCATGGATTGTTCATCATCACCATCCTCTCCACCCTCCTCCATACCCACTCAAGCTAGAGTAA

Protein sequence

MGGSENGGMGSSSEVYEIDYRGPETHSSHISPPHPSHGRPWIVHHHHPLHPPPYPLKLE
Homology
BLAST of Cp4.1LG10g04840 vs. NCBI nr
Match: XP_023543089.1 (uncharacterized protein LOC111803061 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 121 bits (304), Expect = 2.45e-34
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 2  GGSENGGMGSSSEVYEIDYRGPETHSSHISPPHPSHGRPWIVHHHHPLHPPPYPLK 57
          GGSENGGMGSSSEVYEIDYRGPETHSSHISPPHPSHGRPWIVHHHHPLHPPPYPLK
Sbjct: 28 GGSENGGMGSSSEVYEIDYRGPETHSSHISPPHPSHGRPWIVHHHHPLHPPPYPLK 83

BLAST of Cp4.1LG10g04840 vs. NCBI nr
Match: XP_022925989.1 (uncharacterized protein LOC111433241 [Cucurbita moschata] >KAG7034582.1 hypothetical protein SDJN02_04312 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115 bits (287), Expect = 9.60e-32
Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 0

Query: 2  GGSENGGMGSSSEVYEIDYRGPETHSSHISPPHPSHGRPWIVHHHHPLHPPPYPLK 57
          GGSENGGMGSSSEVYEIDYRGPETHSSHISPPH SHGRPWIVHH HPLHPPPYPLK
Sbjct: 28 GGSENGGMGSSSEVYEIDYRGPETHSSHISPPHHSHGRPWIVHHRHPLHPPPYPLK 83

BLAST of Cp4.1LG10g04840 vs. NCBI nr
Match: KAG6604438.1 (hypothetical protein SDJN03_05047, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115 bits (287), Expect = 9.60e-32
Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 0

Query: 2  GGSENGGMGSSSEVYEIDYRGPETHSSHISPPHPSHGRPWIVHHHHPLHPPPYPLK 57
          GGSENGGMGSSSEVYEIDYRGPETHSSHISPPH SHGRPWIVHH HPLHPPPYPLK
Sbjct: 28 GGSENGGMGSSSEVYEIDYRGPETHSSHISPPHHSHGRPWIVHHRHPLHPPPYPLK 83

BLAST of Cp4.1LG10g04840 vs. NCBI nr
Match: XP_022979166.1 (uncharacterized protein LOC111478885 [Cucurbita maxima])

HSP 1 Score: 113 bits (283), Expect = 3.80e-31
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 2  GGSENGGMGSSSEVYEIDYRGPETHSSHISPPHPSHGRPWIVHHHHPLHPPPYPLK 57
          GGSENGG+GSS +VYEIDYRGPETHSSHISPPHPSHGRPWIVHHHHPLHPPPYPLK
Sbjct: 28 GGSENGGLGSS-QVYEIDYRGPETHSSHISPPHPSHGRPWIVHHHHPLHPPPYPLK 82

BLAST of Cp4.1LG10g04840 vs. NCBI nr
Match: XP_022143835.1 (uncharacterized protein LOC111013652 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 2.39e-17
Identity = 40/50 (80.00%), Postives = 41/50 (82.00%), Query Frame = 0

Query: 2  GGSENGGMGSSSEVYEIDYRGPETHSSHISPP-HPSHGRPWIVHHHHPLH 50
          GGSENG M  SSEVYEIDYRGPETHSSH SPP H SHGRPWI+HH   LH
Sbjct: 28 GGSENGAMEISSEVYEIDYRGPETHSSHFSPPDHHSHGRPWIIHHQPKLH 77

BLAST of Cp4.1LG10g04840 vs. ExPASy TrEMBL
Match: A0A6J1EDR4 (uncharacterized protein LOC111433241 OS=Cucurbita moschata OX=3662 GN=LOC111433241 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 4.65e-32
Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 0

Query: 2  GGSENGGMGSSSEVYEIDYRGPETHSSHISPPHPSHGRPWIVHHHHPLHPPPYPLK 57
          GGSENGGMGSSSEVYEIDYRGPETHSSHISPPH SHGRPWIVHH HPLHPPPYPLK
Sbjct: 28 GGSENGGMGSSSEVYEIDYRGPETHSSHISPPHHSHGRPWIVHHRHPLHPPPYPLK 83

BLAST of Cp4.1LG10g04840 vs. ExPASy TrEMBL
Match: A0A6J1IQ06 (uncharacterized protein LOC111478885 OS=Cucurbita maxima OX=3661 GN=LOC111478885 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 1.84e-31
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 2  GGSENGGMGSSSEVYEIDYRGPETHSSHISPPHPSHGRPWIVHHHHPLHPPPYPLK 57
          GGSENGG+GSS +VYEIDYRGPETHSSHISPPHPSHGRPWIVHHHHPLHPPPYPLK
Sbjct: 28 GGSENGGLGSS-QVYEIDYRGPETHSSHISPPHPSHGRPWIVHHHHPLHPPPYPLK 82

BLAST of Cp4.1LG10g04840 vs. ExPASy TrEMBL
Match: A0A6J1CPX6 (uncharacterized protein LOC111013652 OS=Momordica charantia OX=3673 GN=LOC111013652 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.16e-17
Identity = 40/50 (80.00%), Postives = 41/50 (82.00%), Query Frame = 0

Query: 2  GGSENGGMGSSSEVYEIDYRGPETHSSHISPP-HPSHGRPWIVHHHHPLH 50
          GGSENG M  SSEVYEIDYRGPETHSSH SPP H SHGRPWI+HH   LH
Sbjct: 28 GGSENGAMEISSEVYEIDYRGPETHSSHFSPPDHHSHGRPWIIHHQPKLH 77

BLAST of Cp4.1LG10g04840 vs. ExPASy TrEMBL
Match: A0A0A0KIB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G444970 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.66e-11
Identity = 38/59 (64.41%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 4  SENGGMGSSSEVYEIDYRGPETHSSH-ISPPHPSHGR-PWIVHHH-HPLHPPPYPLKLE 59
          SEN   G    VYEIDYRGPETHSSH ISPP  SHGR PWI+HHH H L  P  P  L+
Sbjct: 30 SENSNGGIDDIVYEIDYRGPETHSSHHISPPDHSHGRRPWIIHHHRHQLLQPKQPNSLD 88

BLAST of Cp4.1LG10g04840 vs. ExPASy TrEMBL
Match: A0A5A7U1B9 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00720 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.94e-10
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 15 VYEIDYRGPETHSSH-ISPPHPSHGR-PWIVHHHH 47
          VYEIDYRGPETHSSH ISPP  SHGR PWI+HHHH
Sbjct: 51 VYEIDYRGPETHSSHHISPPDHSHGRRPWIIHHHH 85

BLAST of Cp4.1LG10g04840 vs. TAIR 10
Match: AT5G03120.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 1.8e-05
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0

Query: 7  GGMGSSSEVYEIDYRGPETHSSHISPPHPSHGRPWIVHHH 47
          G   + SEVYEIDYRGPETH+S   PP   HG+P  +HH+
Sbjct: 24 GSEQTDSEVYEIDYRGPETHNSR-PPPETMHGKPPYIHHN 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023543089.12.45e-34100.00uncharacterized protein LOC111803061 [Cucurbita pepo subsp. pepo][more]
XP_022925989.19.60e-3296.43uncharacterized protein LOC111433241 [Cucurbita moschata] >KAG7034582.1 hypothet... [more]
KAG6604438.19.60e-3296.43hypothetical protein SDJN03_05047, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022979166.13.80e-3194.64uncharacterized protein LOC111478885 [Cucurbita maxima][more]
XP_022143835.12.39e-1780.00uncharacterized protein LOC111013652 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1EDR44.65e-3296.43uncharacterized protein LOC111433241 OS=Cucurbita moschata OX=3662 GN=LOC1114332... [more]
A0A6J1IQ061.84e-3194.64uncharacterized protein LOC111478885 OS=Cucurbita maxima OX=3661 GN=LOC111478885... [more]
A0A6J1CPX61.16e-1780.00uncharacterized protein LOC111013652 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A0A0KIB62.66e-1164.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G444970 PE=4 SV=1[more]
A0A5A7U1B91.94e-1085.71Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
Match NameE-valueIdentityDescription
AT5G03120.11.8e-0557.50unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g04840.1Cp4.1LG10g04840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane